Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0027411.1

Orthogroup ID

OG0013676

Physical Location & Seq

Genomic Coordinates Reverse (-)

2807 .. 4279

Gene Structure 1473 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0027411.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1473 bp

atggaagaagatcaagaattcaagcatttttgcaagttgtgtagcaagagcttcccctgtggaagatctctgggtggtcacatgaggtctcacttgatcgacaacaattcgacagaggatcaaaaattcatcaacagcagagttaaggtctcccctctcagcaattacactgagacaggtttcgaaactggtcctcaagcaggttatggcctcagggaaaaccccaagaaaacttggagaattgctggttcaagtgaggaaacttcagttgacaacaagctatgcagagaatgtgggaaagggtttcagtcatggaaagctctgattgctcatatgaagtgtcactcaaactcgactactaatagctttgagaacgaacaagattcttggactagcagtaaggccatggacagccaatctgaaaatgaaactactaatactactaggagaagaactaccaaatccaggagaagaagaacaaggtacatggcaacaactactacaacctcttcttctaatttctctattgtaaacaataatgcttcttcatctgttactgagattgagcaagagcaacaggaagaggttgcttggtgtttgatgatgctctcaagagatgtggggcactggggtggcttgaaaatttttgcggatcttgatcacagtatctctgataacaattcagggttttcggatgctccatcatccctcaagatgaatcgggtttccgaaatcaaggaagctactcttgagacttttaaactgaagaaaaagatgttagatgaggaagtttctgttggtgggttttccaagagtgacaaaaccaagaagaatttgatactcaagaaaactgagttagctgaagctcaattgggttctaacaagttcaattcaagcaacaagagaaagcttcaagatgcttatgatcattcttcaaaaaggagtaagtatgagtgtggtacttgcaacaaggtttttaggtcataccaagctctaggaggccatagagctagtcacaaaaagatcaaaggatgctttgcttctaagattgagagcagtgaacacaccactgagtttgacacagacctctcccctgatcatcccattgcatcagatcacagtaagctcagtaatgtcattgatcatcaagatgatgttgtaaaagttgagagcatcagtacaaagagtaaggggcattcttgtccaatttgcctaaaggttttccccactggtcaagcattgggtggtcacaagagatcacacttgattggtggttcagctgacagtaagagcagccaaagcactatagtgattcccaaaccagcaactcctgaagttagagagtttcttgatctcaaccttcctgctcctgttgaagaagagattagtaccagccatgctgctgctgcacaagccttcaagccatggtgggtaggaaccagccataagccttatgaggctcttgtttcatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2_6

Protein Analysis

490

Amino Acids

54.5

Weight (kDa)

8.66

Isoelectric Point (pI)

55.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013676)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g14270 FvH4_5g14274
malus_domestica	MD06G1199800.v1.1 MD14G1209000.v1.1
prunus_persica	Prupe.5G201400_v2.0.a1
pyrus_communis	pycom06g17660 pycom14g17280
rosa_chinensis	RchiOBHm_Chr7g0182641
rosa_laevigata	RLG00000005112
rosa_multiflora	Rmu_sc0005811.1_g000012 Rmu_sc0027411.1_g000002
rosa_roxburghii	Rroxscaffold_3G00271100
rosa_rugosa	Rorug06G0448700
rosa_samantha	Rh7AG052600 Rh7BG052200 Rh7CG053700 Rh7DG051900
rosa_wichuraiana	Rw7G004280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	191
AciI	CCGC	1 cut(s)	650
AclWI	GGATC	2 cut(s)	126, 660
AcsI	RAATTY	4 cut(s)	17, 125, 642, 832
AcuI	CTGAAG	4 cut(s)	249, 785, 882, 1353
AfaI	GTAC	4 cut(s)	485, 961, 1180, 1390
AfiI	CCNNNNNNNGG	2 cut(s)	200, 465
AgsI	TTSAA	9 cut(s)	22, 252, 640, 889, 894, 914, 936, 1376, 1420
AjnI	CCWGG	1 cut(s)	464
AjuI	GAANNNNNNNTTGG	2 cut(s)	780, 812
AleI	CACNNNNGTG	2 cut(s)	630, 1307
Alw26I	GTCTC	4 cut(s)	93, 154, 167, 746
AlwI	GGATC	2 cut(s)	126, 660
AoxI	GGCC	3 cut(s)	208, 402, 1000
ApeKI	GCWGC	4 cut(s)	1293, 1400, 1403, 1406
ApoI	RAATTY	4 cut(s)	17, 125, 642, 832
AspS9I	GGNCC	1 cut(s)	191
AsuII	TTCGAA	1 cut(s)	183
AvaII	GGWCC	1 cut(s)	191
AxyI	CCTNAGG	1 cut(s)	212
BaeGI	GKGCMC	1 cut(s)	627
BbvI	GCAGC	4 cut(s)	1305, 1387, 1390, 1393
BccI	CCATC	1 cut(s)	709
BciT130I	CCWGG	1 cut(s)	466
BclI	TGATCA	4 cut(s)	658, 925, 1096, 1141
BcoDI	GTCTC	4 cut(s)	93, 154, 167, 746
BfaI	CTAG	4 cut(s)	393, 444, 995, 1011
BfmI	CTRYAG	1 cut(s)	1305
BfuAI	ACCTGC	1 cut(s)	191
BglII	AGATCT	1 cut(s)	65
BisI	GCNGC	4 cut(s)	1294, 1401, 1404, 1407
BlsI	GCNGC	4 cut(s)	1295, 1402, 1405, 1408
Bme1390I	CCNGG	1 cut(s)	466
Bme18I	GGWCC	1 cut(s)	191
BmgT120I	GGNCC	1 cut(s)	191
BmiI	GGNNCC	1 cut(s)	1438
BmrFI	CCNGG	1 cut(s)	466
BmrI	ACTGGG	1 cut(s)	637
BmsI	GCATC	6 cut(s)	594, 685, 907, 1022, 1118, 1182
BmuI	ACTGGG	1 cut(s)	637
Bpu14I	TTCGAA	1 cut(s)	183
BpuEI	CTTGAG	5 cut(s)	180, 595, 695, 770, 827
BsaBI	GATNNNNATC	1 cut(s)	657
BsaI	GGTCTC	2 cut(s)	93, 154
BsaJI	CCNNGG	2 cut(s)	405, 1424
Bsc4I	CCNNNNNNNGG	2 cut(s)	200, 465
Bse1I	ACTGG	3 cut(s)	193, 632, 1234
Bse21I	CCTNAGG	1 cut(s)	212
Bse3DI	GCAATG	1 cut(s)	1104
Bse8I	GATNNNNATC	1 cut(s)	657
BseBI	CCWGG	1 cut(s)	466
BseDI	CCNNGG	2 cut(s)	405, 1424
BseGI	GGATG	4 cut(s)	700, 704, 1037, 1099
BseJI	GATNNNNATC	1 cut(s)	657
BseLI	CCNNNNNNNGG	2 cut(s)	200, 465
BseMI	GCAATG	1 cut(s)	1104
BseMII	CTCAG	7 cut(s)	162, 172, 226, 549, 843, 1062, 1141
BseNI	ACTGG	3 cut(s)	193, 632, 1234
BseSI	GKGCMC	1 cut(s)	627
BseXI	GCAGC	4 cut(s)	1305, 1387, 1390, 1393
BsgI	GTGCAG	1 cut(s)	1392
BshFI	GGCC	3 cut(s)	210, 404, 1002
BslI	CCNNNNNNNGG	2 cut(s)	200, 465
BsmAI	GTCTC	4 cut(s)	93, 154, 167, 746
BsmI	GAATGC	1 cut(s)	1195
BsnI	GGCC	3 cut(s)	210, 404, 1002
Bso31I	GGTCTC	2 cut(s)	93, 154
Bsp119I	TTCGAA	1 cut(s)	183
Bsp1286I	GDGCHC	1 cut(s)	627
Bsp19I	CCATGG	2 cut(s)	405, 1424
BspACI	CCGC	1 cut(s)	650
BspANI	GGCC	3 cut(s)	210, 404, 1002
BspCNI	CTCAG	7 cut(s)	163, 171, 225, 550, 844, 1063, 1140
BspLI	GGNNCC	1 cut(s)	1438
BspMI	ACCTGC	1 cut(s)	191
BspPI	GGATC	2 cut(s)	126, 660
BspT104I	TTCGAA	1 cut(s)	183
BspTNI	GGTCTC	2 cut(s)	93, 154
BsrDI	GCAATG	1 cut(s)	1104
BsrI	ACTGG	3 cut(s)	193, 632, 1234
BssECI	CCNNGG	2 cut(s)	405, 1424
BssT1I	CCWWGG	2 cut(s)	405, 1424
Bst2UI	CCWGG	1 cut(s)	466
Bst4CI	ACNGT	3 cut(s)	665, 1121, 1286
Bst6I	CTCTTC	3 cut(s)	514, 576, 1374
BstBI	TTCGAA	1 cut(s)	183
BstDEI	CTNAG	8 cut(s)	158, 171, 212, 558, 852, 1044, 1071, 1127
BstDSI	CCRYGG	2 cut(s)	405, 1424
BstENI	CCTNNNNNAGG	1 cut(s)	198
BstF5I	GGATG	4 cut(s)	700, 704, 1037, 1099
BstMAI	GTCTC	4 cut(s)	93, 154, 167, 746
BstMWI	GCNNNNNNNGC	4 cut(s)	326, 1299, 1406, 1412
BstNI	CCWGG	1 cut(s)	466
BstSCI	CCNGG	1 cut(s)	464
BstSFI	CTRYAG	1 cut(s)	1305
BstSLI	GKGCMC	1 cut(s)	627
BstV1I	GCAGC	4 cut(s)	1305, 1387, 1390, 1393
BstX2I	RGATCY	2 cut(s)	65, 652
BstYI	RGATCY	2 cut(s)	65, 652
Bsu36I	CCTNAGG	1 cut(s)	212
BsuRI	GGCC	3 cut(s)	210, 404, 1002
BtgI	CCRYGG	2 cut(s)	405, 1424
BtsCI	GGATG	4 cut(s)	700, 704, 1037, 1099
BtsI	GCAGTG	1 cut(s)	1063
BtsIMutI	CAGTG	5 cut(s)	168, 625, 1063, 1068, 1227
BveI	ACCTGC	1 cut(s)	191
Cfr13I	GGNCC	1 cut(s)	191
Csp6I	GTAC	4 cut(s)	484, 960, 1179, 1389
CspCI	CAANNNNNGTGG	4 cut(s)	600, 635, 1057, 1092
CviAII	CATG	6 cut(s)	82, 312, 406, 487, 1397, 1425
CviQI	GTAC	4 cut(s)	484, 960, 1179, 1389
DdeI	CTNAG	8 cut(s)	158, 171, 212, 558, 852, 1044, 1071, 1127
DraI	TTTAAA	1 cut(s)	760
Eam1104I	CTCTTC	3 cut(s)	514, 576, 1374
EarI	CTCTTC	3 cut(s)	514, 576, 1374
Eco130I	CCWWGG	2 cut(s)	405, 1424
Eco31I	GGTCTC	2 cut(s)	93, 154
Eco47I	GGWCC	1 cut(s)	191
Eco57I	CTGAAG	4 cut(s)	249, 785, 882, 1353
Eco81I	CCTNAGG	1 cut(s)	212
EcoNI	CCTNNNNNAGG	1 cut(s)	198
EcoRI	GAATTC	1 cut(s)	17
EcoRII	CCWGG	1 cut(s)	464
EcoT14I	CCWWGG	2 cut(s)	405, 1424
ErhI	CCWWGG	2 cut(s)	405, 1424
FaeI	CATG	6 cut(s)	85, 315, 409, 490, 1400, 1428
FalI	AAGNNNNNCTT	2 cut(s)	732, 764
FatI	CATG	6 cut(s)	81, 311, 405, 486, 1396, 1424
FauNDI	CATATG	1 cut(s)	333
FbaI	TGATCA	4 cut(s)	658, 925, 1096, 1141
Fnu4HI	GCNGC	4 cut(s)	1294, 1401, 1404, 1407
FokI	GGATG	4 cut(s)	691, 707, 1044, 1086
Fsp4HI	GCNGC	4 cut(s)	1294, 1401, 1404, 1407
FspBI	CTAG	4 cut(s)	393, 444, 995, 1011
GluI	GCNGC	4 cut(s)	1294, 1401, 1404, 1407
HaeIII	GGCC	3 cut(s)	210, 404, 1002
Hin1II	CATG	6 cut(s)	85, 315, 409, 490, 1400, 1428
HincII	GTYRAC	1 cut(s)	271
HindII	GTYRAC	1 cut(s)	271
HindIII	AAGCTT	1 cut(s)	908
HinfI	GANTC	3 cut(s)	383, 718, 1312
Hpy166II	GTNNAC	3 cut(s)	271, 532, 1061
Hpy188I	TCNGA	6 cut(s)	324, 421, 673, 694, 730, 1114
Hpy8I	GTNNAC	3 cut(s)	271, 532, 1061
HpyAV	CCTTC	2 cut(s)	1370, 1426
HpyCH4III	ACNGT	3 cut(s)	665, 1121, 1286
HpyCH4V	TGCA	5 cut(s)	33, 285, 966, 1109, 1409
HpyF10VI	GCNNNNNNNGC	4 cut(s)	326, 1299, 1406, 1412
HpyF3I	CTNAG	8 cut(s)	158, 171, 212, 558, 852, 1044, 1071, 1127
Hsp92II	CATG	6 cut(s)	85, 315, 409, 490, 1400, 1428
Ksp22I	TGATCA	4 cut(s)	658, 925, 1096, 1141
LmnI	GCTCC	2 cut(s)	703, 1372
Lsp1109I	GCAGC	4 cut(s)	1305, 1387, 1390, 1393
LweI	GCATC	6 cut(s)	594, 685, 907, 1022, 1118, 1182
MaeI	CTAG	4 cut(s)	393, 444, 995, 1011
MaeIII	GTNAC	6 cut(s)	77, 341, 553, 815, 1013, 1247
MfeI	CAATTG	1 cut(s)	869
MflI	RGATCY	2 cut(s)	65, 652
MhlI	GDGCHC	1 cut(s)	627
MseI	TTAA	2 cut(s)	144, 759
MslI	CAYNNNNRTG	3 cut(s)	630, 1149, 1307
MspA1I	CMGCKG	1 cut(s)	1280
MspR9I	CCNGG	1 cut(s)	466
MunI	CAATTG	1 cut(s)	869
Mva1269I	GAATGC	1 cut(s)	1195
MvaI	CCWGG	1 cut(s)	466
MwoI	GCNNNNNNNGC	4 cut(s)	326, 1299, 1406, 1412
NcoI	CCATGG	2 cut(s)	405, 1424
NdeI	CATATG	1 cut(s)	333
NlaIII	CATG	6 cut(s)	85, 315, 409, 490, 1400, 1428
NlaIV	GGNNCC	1 cut(s)	1438
NmuCI	GTSAC	5 cut(s)	77, 341, 815, 1013, 1247
NspV	TTCGAA	1 cut(s)	183
OliI	CACNNNNGTG	2 cut(s)	630, 1307
PctI	GAATGC	1 cut(s)	1195
PfeI	GAWTC	3 cut(s)	383, 718, 1312
PfoI	TCCNGGA	1 cut(s)	464
PkrI	GCNGC	4 cut(s)	1295, 1402, 1405, 1408
Psp6I	CCWGG	1 cut(s)	464
PspGI	CCWGG	1 cut(s)	464
PspN4I	GGNNCC	1 cut(s)	1438
PspPI	GGNCC	1 cut(s)	191
PsuI	RGATCY	2 cut(s)	65, 652
PvuII	CAGCTG	1 cut(s)	1280
RsaI	GTAC	4 cut(s)	485, 961, 1180, 1390
RsaNI	GTAC	4 cut(s)	484, 960, 1179, 1389
RseI	CAYNNNNRTG	3 cut(s)	630, 1149, 1307
SaqAI	TTAA	2 cut(s)	144, 759
SatI	GCNGC	4 cut(s)	1294, 1401, 1404, 1407
Sau96I	GGNCC	1 cut(s)	191
ScrFI	CCNGG	1 cut(s)	466
SduI	GDGCHC	1 cut(s)	627
SfaNI	GCATC	6 cut(s)	594, 685, 907, 1022, 1118, 1182
SfcI	CTRYAG	1 cut(s)	1305
SfuI	TTCGAA	1 cut(s)	183
SinI	GGWCC	1 cut(s)	191
SmiMI	CAYNNNNRTG	3 cut(s)	630, 1149, 1307
SmlI	CTYRAG	5 cut(s)	195, 610, 710, 749, 842
SmoI	CTYRAG	5 cut(s)	195, 610, 710, 749, 842
SsiI	CCGC	1 cut(s)	650
SspMI	CTAG	4 cut(s)	393, 444, 995, 1011
StyD4I	CCNGG	1 cut(s)	464
StyI	CCWWGG	2 cut(s)	405, 1424
TaaI	ACNGT	3 cut(s)	665, 1121, 1286
TaqI	TCGA	4 cut(s)	99, 110, 183, 353
TatI	WGTACW	1 cut(s)	1178
TfiI	GAWTC	3 cut(s)	383, 718, 1312
Tru1I	TTAA	2 cut(s)	144, 759
Tru9I	TTAA	2 cut(s)	144, 759
TscAI	CASTG	5 cut(s)	175, 632, 1063, 1075, 1234
TseFI	GTSAC	5 cut(s)	77, 341, 815, 1013, 1247
TseI	GCWGC	4 cut(s)	1293, 1400, 1403, 1406
Tsp45I	GTSAC	5 cut(s)	77, 341, 815, 1013, 1247
TspDTI	ATGAA	6 cut(s)	118, 350, 441, 537, 731, 1458
TspRI	CASTG	5 cut(s)	175, 632, 1063, 1075, 1234
VpaK11BI	GGWCC	1 cut(s)	191
XagI	CCTNNNNNAGG	1 cut(s)	198
XapI	RAATTY	4 cut(s)	17, 125, 642, 832
XspI	CTAG	4 cut(s)	393, 444, 995, 1011

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.