MD06G1199800.v1.1

ZINC FINGER protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr06
OG0013676
Physical Location & Seq
Reverse (-)
33339758 .. 33341272
1515 bp
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UTR
Exon/CDS
Intron
MD06G1199800.v1.1.491

Sequence Viewer

Length: 1515 bp
ATGGAAGAAGATCAAGAGTTGAAGTATGTATGCAAGTTTTGCAGCAAAAGCTTCCCCTGTGGCAGATCATTGGGAGGTCACATGAGGTGTCACTTGATCAACAATTCGCTGGAAACAGAGGAAAAGCTCAATAACGGAGGAGTTAAGCTCTCGTCCTCCAAGAATGGCGGTTCTGATTTCGAAGGAGGAACTCATCAGCAACCCGGTTATGGTCTGAGGGAGAATCCCAAGAAAACTTGGAGGCTCGCGGACTCGAGTGAGGACACTTCGCTTCATCCGGACAAGTTTTGTAGAGAATGTGGCAAATGGTTTCAGTCTTGGAAATCTCTGTTCGGTCACATGAAGTTCCACTCGGAAAAAGAAAGAGTTTCGATTGAGAGCCTCGAGGAAGAACACGAAGATTCTTGGACTAGCCAATCGGAGAACAAAACTACTGCTGCTGCTCCTCCCAATCGGGGAAGAAGATCCGGAAGAAAAACAAGGTACATGAGAGCAACAACTTCATCTTCTAACTTTTCAATTGTTGCTGCTGCTACTGCTACTTCCGAGATTGAGCAAGAACAAGAAGAGGTTGCTATGTGTTTGATGATGCTTTCGAGGGATTCGGGTCACTGGGGCGGCTTAAAATTAGTAGCTCGTGACTCTTTCGATGGAAATTCAGGGTTCTCGGATCCTCCATCATCAGTTGGAACAACTCGGGTTGCGGATATTAAGAGTAAGATTGCTACAACTTTGAAACTGAAGAACAAACTCAATAAAAAGGTGTTGGAACCTCGAAACTTCGAGTCCCTAGCAGTACTCGAAGGTAGAAAATCCAAGTTTTGTTCTTCTGCTGGTGGGTTTTCGAATAATGATAAATTGGGTTCCAACAAGTCCAATTCAAGCAAGAGGAAGATCAAAGAGACTTGTGATTTTGAATTGAGGTCAGATCAGTCCCCGAAAAATTTGAGTACTAGTAGAACTGATATTTTGGATTCTGAAGTAGGAGTTTGCAAGAGTTCACAAAAGAGAAGCAAATTCGAATGTACTACTTGCAACAAGGTTTTTCGATCGTACCAAGCTCTGGGAGGCCATAGGGCGAGTCACAAGAAGACCAAAGGGTGCTTCGCTTCGAAGTTCGAAAGCAGTGAAAACACCATGGAAACTGACATCTCCCCCAAGTCTTGCTGCAACAATGACAACCCCATTGAGCAAGAAATAGCAGAGAGCAGTGCAAAAAGTACAAAAGGGCATTCCTGTCCAATTTGCTACAGAGTTTTCTCCTCAGGGCAAGCATTGGGAGGGCACAAGAGATCCCATTTGATTGGTGAGGCTAAAATTACCAACCAAACCCTAGTGATTCAAAAGCCTGCAGCTCCTGAAGTGAGAGACTTTCTTGATCTCAATCTTCCTGCTCCTGTGGAGGAAGAAAGCAGTAGCAACCATGATGCTGCTGCAGCAGCATTTAAGCCATGGTGGGTTGGAAGCAGCAGTCATAAGCATGAGGCTGCCCTTGTAGGGCTCATCTCCAACTGA

Protein Analysis

505

Amino Acids

55.55

Weight (kDa)

8.76

Isoelectric Point (pI)

55.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-C2H2_6 PF13912 9 - 31 6.6e-06 C2H2-type zinc finger
zf-C2H2_6 PF13912 340 - 364 2.6e-12 C2H2-type zinc finger
zf-C2H2_6 PF13912 411 - 433 1.3e-09 C2H2-type zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013676)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g14270 FvH4_5g14274
malus_domestica MD06G1199800.v1.1 MD14G1209000.v1.1
prunus_persica Prupe.5G201400_v2.0.a1
pyrus_communis pycom06g17660 pycom14g17280
rosa_chinensis RchiOBHm_Chr7g0182641
rosa_laevigata RLG00000005112
rosa_multiflora Rmu_sc0005811.1_g000012 Rmu_sc0027411.1_g000002
rosa_roxburghii Rroxscaffold_3G00271100
rosa_rugosa Rorug06G0448700
rosa_samantha Rh7AG052600 Rh7BG052200 Rh7CG053700 Rh7DG051900
rosa_wichuraiana Rw7G004280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 383
AccB7I CCANNNNNTGG 1 cut(s) 1063
AccII CGCG 1 cut(s) 248
AccIII TCCGGA 2 cut(s) 277, 467
AciI CCGC 4 cut(s) 168, 248, 618, 704
AclWI GGATC 4 cut(s) 459, 665, 678, 1287
AcsI RAATTY 3 cut(s) 655, 943, 1016
AcuI CTGAAG 3 cut(s) 761, 999, 1380
AfaI GTAC 6 cut(s) 485, 798, 952, 1027, 1055, 1222
AfiI CCNNNNNNNGG 4 cut(s) 209, 455, 1063, 1497
AgsI TTSAA 6 cut(s) 22, 519, 736, 882, 917, 1343
AhlI ACTAGT 1 cut(s) 953
AjuI GAANNNNNNNTTGG 2 cut(s) 1088, 1120
AluBI AGCT 6 cut(s) 51, 127, 148, 635, 1061, 1355
AluI AGCT 6 cut(s) 51, 127, 148, 635, 1061, 1355
Alw26I GTCTC 2 cut(s) 896, 1362
AlwI GGATC 4 cut(s) 459, 665, 678, 1287
AlwNI CAGNNNCTG 1 cut(s) 1358
Ama87I CYCGRG 3 cut(s) 253, 383, 696
Aor13HI TCCGGA 2 cut(s) 277, 467
AoxI GGCC 1 cut(s) 1069
ApoI RAATTY 3 cut(s) 655, 943, 1016
AsuC2I CCSGG 1 cut(s) 204
AsuHPI GGTGA 1 cut(s) 1319
AsuII TTCGAA 5 cut(s) 180, 845, 1020, 1112, 1119
AvaI CYCGRG 3 cut(s) 253, 383, 696
AxyI CCTNAGG 1 cut(s) 1264
BaeGI GKGCMC 1 cut(s) 1287
BamHI GGATCC 1 cut(s) 670
BanII GRGCYC 1 cut(s) 1503
BauI CACGAG 1 cut(s) 636
BbsI GAAGAC 1 cut(s) 1097
BccI CCATC 2 cut(s) 644, 685
BclI TGATCA 1 cut(s) 96
BcnI CCSGG 1 cut(s) 204
BcoDI GTCTC 2 cut(s) 896, 1362
BcuI ACTAGT 1 cut(s) 953
BfaI CTAG 4 cut(s) 411, 791, 954, 1334
BfmI CTRYAG 3 cut(s) 1249, 1350, 1434
BmcAI AGTACT 2 cut(s) 798, 952
Bme1390I CCNGG 1 cut(s) 204
BmeT110I CYCGRG 3 cut(s) 253, 383, 696
BmiI GGNNCC 3 cut(s) 672, 771, 865
BmrFI CCNGG 1 cut(s) 204
BmrI ACTGGG 1 cut(s) 622
BmsI GCATC 2 cut(s) 579, 1417
BmuI ACTGGG 1 cut(s) 622
BpiI GAAGAC 1 cut(s) 1097
BplI GAGNNNNNCTC 2 cut(s) 132, 164
Bpu14I TTCGAA 5 cut(s) 180, 845, 1020, 1112, 1119
BpuMI CCSGG 1 cut(s) 204
BsaBI GATNNNNATC 1 cut(s) 1383
BsaJI CCNNGG 2 cut(s) 1137, 1451
BsaWI WCCGGW 2 cut(s) 277, 467
Bsc4I CCNNNNNNNGG 4 cut(s) 209, 455, 1063, 1497
Bse1I ACTGG 1 cut(s) 617
Bse21I CCTNAGG 1 cut(s) 1264
Bse8I GATNNNNATC 1 cut(s) 1383
BseAI TCCGGA 2 cut(s) 277, 467
BseDI CCNNGG 2 cut(s) 1137, 1451
BseGI GGATG 1 cut(s) 274
BseJI GATNNNNATC 1 cut(s) 1383
BseLI CCNNNNNNNGG 4 cut(s) 209, 455, 1063, 1497
BseMII CTCAG 2 cut(s) 206, 1278
BseNI ACTGG 1 cut(s) 617
BseRI GAGGAG 3 cut(s) 153, 435, 1252
BseSI GKGCMC 1 cut(s) 1287
Bsh1236I CGCG 1 cut(s) 248
Bsh1285I CGRYCG 1 cut(s) 1052
BshFI GGCC 1 cut(s) 1071
BsiEI CGRYCG 1 cut(s) 1052
BsiHKCI CYCGRG 3 cut(s) 253, 383, 696
BsiSI CCGG 3 cut(s) 204, 278, 468
BslFI GGGAC 2 cut(s) 772, 919
BslI CCNNNNNNNGG 4 cut(s) 209, 455, 1063, 1497
BsmAI GTCTC 2 cut(s) 896, 1362
BsmFI GGGAC 2 cut(s) 772, 919
BsmI GAATGC 1 cut(s) 1231
BsnI GGCC 1 cut(s) 1071
BsoBI CYCGRG 3 cut(s) 253, 383, 696
Bsp119I TTCGAA 5 cut(s) 180, 845, 1020, 1112, 1119
Bsp1286I GDGCHC 2 cut(s) 1287, 1503
Bsp13I TCCGGA 2 cut(s) 277, 467
Bsp19I CCATGG 2 cut(s) 1137, 1451
BspACI CCGC 4 cut(s) 168, 248, 618, 704
BspANI GGCC 1 cut(s) 1071
BspCNI CTCAG 2 cut(s) 207, 1277
BspEI TCCGGA 2 cut(s) 277, 467
BspFNI CGCG 1 cut(s) 248
BspLI GGNNCC 3 cut(s) 672, 771, 865
BspMAI CTGCAG 2 cut(s) 1354, 1438
BspPI GGATC 4 cut(s) 459, 665, 678, 1287
BspT104I TTCGAA 5 cut(s) 180, 845, 1020, 1112, 1119
BsrI ACTGG 1 cut(s) 617
BssECI CCNNGG 2 cut(s) 1137, 1451
BssSI CACGAG 1 cut(s) 636
BssT1I CCWWGG 2 cut(s) 1137, 1451
Bst2BI CACGAG 1 cut(s) 636
Bst6I CTCTTC 1 cut(s) 561
BstAPI GCANNNNNTGC 1 cut(s) 39
BstBI TTCGAA 5 cut(s) 180, 845, 1020, 1112, 1119
BstC8I GCNNGC 3 cut(s) 246, 1272, 1350
BstDEI CTNAG 2 cut(s) 215, 1264
BstDSI CCRYGG 2 cut(s) 1137, 1451
BstF5I GGATG 1 cut(s) 274
BstFNI CGCG 1 cut(s) 248
BstMAI GTCTC 2 cut(s) 896, 1362
BstMCI CGRYCG 1 cut(s) 1052
BstMWI GCNNNNNNNGC 5 cut(s) 39, 48, 536, 1436, 1439
BstSCI CCNGG 1 cut(s) 202
BstSFI CTRYAG 3 cut(s) 1249, 1350, 1434
BstSLI GKGCMC 1 cut(s) 1287
BstUI CGCG 1 cut(s) 248
BstV2I GAAGAC 1 cut(s) 1097
BstX2I RGATCY 3 cut(s) 464, 670, 1292
BstXI CCANNNNNNTGG 1 cut(s) 1304
BstYI RGATCY 3 cut(s) 464, 670, 1292
Bsu36I CCTNAGG 1 cut(s) 1264
BsuRI GGCC 1 cut(s) 1071
BtgI CCRYGG 2 cut(s) 1137, 1451
BtsCI GGATG 1 cut(s) 274
BtsI GCAGTG 2 cut(s) 1132, 1216
BtsIMutI CAGTG 3 cut(s) 610, 1132, 1216
Cac8I GCNNGC 3 cut(s) 246, 1272, 1350
CaiI CAGNNNCTG 1 cut(s) 1358
Csp6I GTAC 6 cut(s) 484, 797, 951, 1026, 1054, 1221
CviAII CATG 7 cut(s) 82, 340, 487, 1138, 1424, 1452, 1481
CviQI GTAC 6 cut(s) 484, 797, 951, 1026, 1054, 1221
DdeI CTNAG 2 cut(s) 215, 1264
Eam1104I CTCTTC 1 cut(s) 561
EarI CTCTTC 1 cut(s) 561
Eco130I CCWWGG 2 cut(s) 1137, 1451
Eco24I GRGCYC 1 cut(s) 1503
Eco57I CTGAAG 3 cut(s) 761, 999, 1380
Eco81I CCTNAGG 1 cut(s) 1264
Eco88I CYCGRG 3 cut(s) 253, 383, 696
EcoT14I CCWWGG 2 cut(s) 1137, 1451
EcoT38I GRGCYC 1 cut(s) 1503
ErhI CCWWGG 2 cut(s) 1137, 1451
FaeI CATG 7 cut(s) 85, 343, 490, 1141, 1427, 1455, 1484
FaqI GGGAC 2 cut(s) 772, 919
FatI CATG 7 cut(s) 81, 339, 486, 1137, 1423, 1451, 1480
FbaI TGATCA 1 cut(s) 96
FokI GGATG 1 cut(s) 261
FriOI GRGCYC 1 cut(s) 1503
FspBI CTAG 4 cut(s) 411, 791, 954, 1334
HaeIII GGCC 1 cut(s) 1071
HapII CCGG 3 cut(s) 204, 278, 468
Hin1II CATG 7 cut(s) 85, 343, 490, 1141, 1427, 1455, 1484
HindIII AAGCTT 1 cut(s) 49
HinfI GANTC 9 cut(s) 223, 251, 401, 602, 641, 785, 974, 1081, 1339
HpaII CCGG 3 cut(s) 204, 278, 468
HphI GGTGA 1 cut(s) 1319
Hpy166II GTNNAC 1 cut(s) 1001
Hpy188I TCNGA 8 cut(s) 175, 216, 355, 421, 547, 670, 928, 979
Hpy188III TCNNGA 6 cut(s) 14, 278, 468, 638, 1358, 1376
Hpy8I GTNNAC 1 cut(s) 1001
HpyAV CCTTC 2 cut(s) 176, 797
HpyCH4V TGCA 8 cut(s) 33, 42, 993, 1035, 1170, 1214, 1352, 1436
HpyF10VI GCNNNNNNNGC 5 cut(s) 39, 48, 536, 1436, 1439
HpyF3I CTNAG 2 cut(s) 215, 1264
Hsp92II CATG 7 cut(s) 85, 343, 490, 1141, 1427, 1455, 1484
Kpn2I TCCGGA 2 cut(s) 277, 467
Ksp22I TGATCA 1 cut(s) 96
LmnI GCTCC 3 cut(s) 448, 1360, 1399
LweI GCATC 2 cut(s) 579, 1417
MaeI CTAG 4 cut(s) 411, 791, 954, 1334
MaeIII GTNAC 6 cut(s) 77, 89, 335, 608, 638, 1082
MfeI CAATTG 1 cut(s) 519
MflI RGATCY 3 cut(s) 464, 670, 1292
MhlI GDGCHC 2 cut(s) 1287, 1503
MlyI GAGTC 4 cut(s) 245, 635, 794, 1090
MmeI TCCRAC 4 cut(s) 667, 747, 891, 1441
MroI TCCGGA 2 cut(s) 277, 467
MseI TTAA 4 cut(s) 144, 623, 711, 1446
MslI CAYNNNNRTG 1 cut(s) 1479
MspI CCGG 3 cut(s) 204, 278, 468
MspR9I CCNGG 1 cut(s) 204
MunI CAATTG 1 cut(s) 519
Mva1269I GAATGC 1 cut(s) 1231
MvnI CGCG 1 cut(s) 248
MwoI GCNNNNNNNGC 5 cut(s) 39, 48, 536, 1436, 1439
NciI CCSGG 1 cut(s) 204
NcoI CCATGG 2 cut(s) 1137, 1451
NlaIII CATG 7 cut(s) 85, 343, 490, 1141, 1427, 1455, 1484
NlaIV GGNNCC 3 cut(s) 672, 771, 865
NmuCI GTSAC 6 cut(s) 77, 89, 335, 608, 638, 1082
NspV TTCGAA 5 cut(s) 180, 845, 1020, 1112, 1119
PaeR7I CTCGAG 2 cut(s) 253, 383
PctI GAATGC 1 cut(s) 1231
PfeI GAWTC 5 cut(s) 223, 401, 602, 974, 1339
PflMI CCANNNNNTGG 1 cut(s) 1063
Ple19I CGATCG 1 cut(s) 1052
PleI GAGTC 4 cut(s) 245, 635, 793, 1089
PpsI GAGTC 4 cut(s) 245, 635, 793, 1089
PspN4I GGNNCC 3 cut(s) 672, 771, 865
PspXI VCTCGAGB 2 cut(s) 253, 383
PstI CTGCAG 2 cut(s) 1354, 1438
PstNI CAGNNNCTG 1 cut(s) 1358
PsuI RGATCY 3 cut(s) 464, 670, 1292
PvuI CGATCG 1 cut(s) 1052
RsaI GTAC 6 cut(s) 485, 798, 952, 1027, 1055, 1222
RsaNI GTAC 6 cut(s) 484, 797, 951, 1026, 1054, 1221
RseI CAYNNNNRTG 1 cut(s) 1479
SaqAI TTAA 4 cut(s) 144, 623, 711, 1446
ScaI AGTACT 2 cut(s) 798, 952
SchI GAGTC 4 cut(s) 245, 635, 794, 1090
ScrFI CCNGG 1 cut(s) 204
SduI GDGCHC 2 cut(s) 1287, 1503
SfaNI GCATC 2 cut(s) 579, 1417
SfcI CTRYAG 3 cut(s) 1249, 1350, 1434
Sfr274I CTCGAG 2 cut(s) 253, 383
SfuI TTCGAA 5 cut(s) 180, 845, 1020, 1112, 1119
SlaI CTCGAG 2 cut(s) 253, 383
SmiMI CAYNNNNRTG 1 cut(s) 1479
SmlI CTYRAG 2 cut(s) 253, 383
SmoI CTYRAG 2 cut(s) 253, 383
SpeI ACTAGT 1 cut(s) 953
SsiI CCGC 4 cut(s) 168, 248, 618, 704
SspMI CTAG 4 cut(s) 411, 791, 954, 1334
StyD4I CCNGG 1 cut(s) 202
StyI CCWWGG 2 cut(s) 1137, 1451
TaqII GACCGA 1 cut(s) 323
TatI WGTACW 4 cut(s) 796, 950, 1025, 1220
TauI GCSGC 1 cut(s) 621
TfiI GAWTC 5 cut(s) 223, 401, 602, 974, 1339
Tru1I TTAA 4 cut(s) 144, 623, 711, 1446
Tru9I TTAA 4 cut(s) 144, 623, 711, 1446
TscAI CASTG 3 cut(s) 617, 1132, 1216
TseFI GTSAC 6 cut(s) 77, 89, 335, 608, 638, 1082
Tsp45I GTSAC 6 cut(s) 77, 89, 335, 608, 638, 1082
TspDTI ATGAA 3 cut(s) 263, 356, 492
TspGWI ACGGA 1 cut(s) 150
TspRI CASTG 3 cut(s) 617, 1132, 1216
Van91I CCANNNNNTGG 1 cut(s) 1063
XapI RAATTY 3 cut(s) 655, 943, 1016
XhoI CTCGAG 2 cut(s) 253, 383
XspI CTAG 4 cut(s) 411, 791, 954, 1334
ZrmI AGTACT 2 cut(s) 798, 952
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.