Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0013676

Physical Location & Seq

Genomic Coordinates Reverse (-)

29530172 .. 29531701

Gene Structure 1530 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1209000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1530 bp

ATGGAAGAAGATCAAGAGTTGAAGTATGCGTGCAAGTTCTGCACCAAGAGCTTCCCCTGCGGCAGATCATTGGGAGGTCACATGAAATCTCACTTGACCAACAATTCGCCGGAAACAGAGGAAAAACTCAACATCGGCAGAGTTATGCCCTCGTCAGGCAACAATGGTAGTTCTGATTTCGGAGGAGGATCTCATCAGCAACCCGGTTATGGCCTCAGGGAGAATCCGAAAAAAACTTTGAGACTCGCGGATTTGAGTGAGGAAACTTCGTTTCTTCTGGACAAGTTTTGTAGGGAATGTGGCAAAGGGTTTCAGTCTTGGAAAGCTCTGTTTGGTCACATGAAGTGCCACTCAGAAAAAGAAAGAGTTTCGATTGAGAGCTTTGAAGAACATGAAGGTTCTTGGACTAGCCAATCAGACAACGAAACTCCTACTGCCGCTGCTCCCAATCGGAGAAGAAGATCGGGGAGAAGAAGAACAAGGTACATGGGAGCAACAACTTCCTCTTCTAATTTTTCAATTGCTAATGCTTCTGTTCCTACTACTACTTCCTCTGTTTCCGAGACTGAGCAGGAACAAGAAGAGGTTGCTATGTGTTTGATGATGCTTTCGAGGGATTCAAGTCACTGGGGCGGGTTAAAATTAGTACCTCATAACTCTCCCGAAGACAATTCAGGGTTCTCAGATTCTCCATCATCAGTCAGAACAACCTGGGTTGCAGATATTAAGGGTAAGATTGATGAAACTTTGAAACTGAAGAACAAACTCACTAAAAAGGTATGGGAGCCTCGAGAATTCGAGTCCCTAGCAGTACTAGAAGGTAGAAAATCCAAGTTTTGCTCCTCTGATGGCGGGTTTTCAAAGAATGATAAATTGGGTTCCAACAAGTACAACTCAAGCAAGAGAAAGATCAGAGAGGCTTGTGATTTCGAATCGAGGTCGGATAAGTCCCCGAAAAAATCGAGTACTAGTAGAGCTGATGCTTTGGATTCTGAAGTAGTAGTATGCAAGAGTTCACAAAAGAGAAGCAAATTCGAATGTACTACTTGCAACAAGGTTTTTCGATCGTACCAAGCTCTCGGAGGCCATAGGGCAAGTCACAAGAAGATCAAAGGATGCTTCGCTTCGAAGATCGAAGGCAGCGAAAACACCATGGAAACCGACATCTCCCCTGAGTCTTGCTGCAACAATGAGAACCCCATTGAGCAAGAAATAGCTGAGAGCAGTGCAAAGAGTACAAAAGGGCATTCCTGTCCAATTTGCTACAGAGTTTTTCCATCAGGGCAAGCATTGGGAGGGCACAAGAGATCCCATTTGATTGGTGAGGCTAAAATTACCACCAAAACCCTAGTGATTCAGAAGCCTGCAGCACCTGAAGCGAGAGACTTTCTTGATCTCAACCTTCCTGCTCCTGTGGAGGAAGAGAGCAGTAGCAACCATGATGCAGCTGCAGCAGCATTTAAGCCATGGTGGGTTGGAAGGAGCAGCCATAAGCATGAGGCTGCCCTTGTAGGCCTCATCTCCAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2_6

Protein Analysis

510

Amino Acids

56.15

Weight (kDa)

8.69

Isoelectric Point (pI)

67.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C2H2_6	PF13912	97 - 119	6.6e-06	C2H2-type zinc finger
zf-C2H2_6	PF13912	345 - 369	1.1e-12	C2H2-type zinc finger
zf-C2H2_6	PF13912	416 - 438	7.7e-10	C2H2-type zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013676)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g14270 FvH4_5g14274
malus_domestica	MD06G1199800.v1.1 MD14G1209000.v1.1
prunus_persica	Prupe.5G201400_v2.0.a1
pyrus_communis	pycom06g17660 pycom14g17280
rosa_chinensis	RchiOBHm_Chr7g0182641
rosa_laevigata	RLG00000005112
rosa_multiflora	Rmu_sc0005811.1_g000012 Rmu_sc0027411.1_g000002
rosa_roxburghii	Rroxscaffold_3G00271100
rosa_rugosa	Rorug06G0448700
rosa_samantha	Rh7AG052600 Rh7BG052200 Rh7CG053700 Rh7DG051900
rosa_wichuraiana	Rw7G004280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	248
AciI	CCGC	5 cut(s)	60, 248, 438, 633, 852
AclWI	GGATC	2 cut(s)	196, 1302
AcsI	RAATTY	2 cut(s)	794, 1031
AcuI	CTGAAG	3 cut(s)	776, 1014, 1395
AfaI	GTAC	8 cut(s)	485, 648, 813, 890, 967, 1042, 1070, 1237
AfiI	CCNNNNNNNGG	2 cut(s)	155, 209
AgsI	TTSAA	6 cut(s)	22, 386, 519, 621, 751, 861
AhlI	ACTAGT	1 cut(s)	968
AjnI	CCWGG	1 cut(s)	710
AjuI	GAANNNNNNNTTGG	2 cut(s)	857, 889
AluBI	AGCT	7 cut(s)	51, 326, 381, 977, 1076, 1217, 1448
AluI	AGCT	7 cut(s)	51, 326, 381, 977, 1076, 1217, 1448
Alw26I	GTCTC	3 cut(s)	235, 557, 1377
AlwI	GGATC	2 cut(s)	196, 1302
AlwNI	CAGNNNCTG	1 cut(s)	1373
Ama87I	CYCGRG	1 cut(s)	789
AoxI	GGCC	3 cut(s)	211, 1084, 1513
ApoI	RAATTY	2 cut(s)	794, 1031
ArsI	GACNNNNNNTTYG	2 cut(s)	88, 120
AsuC2I	CCSGG	1 cut(s)	204
AsuHPI	GGTGA	1 cut(s)	1334
AsuII	TTCGAA	3 cut(s)	930, 1035, 1127
AvaI	CYCGRG	1 cut(s)	789
AxyI	CCTNAGG	1 cut(s)	215
BaeGI	GKGCMC	1 cut(s)	1302
BbsI	GAAGAC	1 cut(s)	672
BccI	CCATC	3 cut(s)	700, 842, 1285
BciT130I	CCWGG	1 cut(s)	712
BcnI	CCSGG	1 cut(s)	204
BcoDI	GTCTC	3 cut(s)	235, 557, 1377
BcuI	ACTAGT	1 cut(s)	968
BfaI	CTAG	5 cut(s)	408, 806, 815, 969, 1349
BfmI	CTRYAG	3 cut(s)	1264, 1365, 1449
BmcAI	AGTACT	2 cut(s)	813, 967
Bme1390I	CCNGG	2 cut(s)	204, 712
BmeT110I	CYCGRG	1 cut(s)	789
BmiI	GGNNCC	2 cut(s)	786, 880
BmrFI	CCNGG	2 cut(s)	204, 712
BmrI	ACTGGG	1 cut(s)	637
BmsI	GCATC	4 cut(s)	594, 970, 1106, 1432
BmuI	ACTGGG	1 cut(s)	637
BpiI	GAAGAC	1 cut(s)	672
Bpu14I	TTCGAA	3 cut(s)	930, 1035, 1127
BpuEI	CTTGAG	1 cut(s)	880
BpuMI	CCSGG	1 cut(s)	204
BsaJI	CCNNGG	3 cut(s)	711, 1152, 1466
Bsc4I	CCNNNNNNNGG	2 cut(s)	155, 209
Bse1I	ACTGG	1 cut(s)	632
Bse21I	CCTNAGG	1 cut(s)	215
BseBI	CCWGG	1 cut(s)	712
BseDI	CCNNGG	3 cut(s)	711, 1152, 1466
BseGI	GGATG	1 cut(s)	1121
BseLI	CCNNNNNNNGG	2 cut(s)	155, 209
BseMII	CTCAG	6 cut(s)	229, 366, 558, 696, 1164, 1209
BseNI	ACTGG	1 cut(s)	632
BseRI	GAGGAG	2 cut(s)	198, 832
BseSI	GKGCMC	1 cut(s)	1302
BsgI	GTGCAG	1 cut(s)	25
Bsh1236I	CGCG	1 cut(s)	248
Bsh1285I	CGRYCG	1 cut(s)	1067
BshFI	GGCC	3 cut(s)	213, 1086, 1515
BsiEI	CGRYCG	1 cut(s)	1067
BsiHKCI	CYCGRG	1 cut(s)	789
BsiSI	CCGG	2 cut(s)	110, 204
BslFI	GGGAC	2 cut(s)	787, 934
BslI	CCNNNNNNNGG	2 cut(s)	155, 209
BsmAI	GTCTC	3 cut(s)	235, 557, 1377
BsmFI	GGGAC	2 cut(s)	787, 934
BsmI	GAATGC	1 cut(s)	1246
BsnI	GGCC	3 cut(s)	213, 1086, 1515
BsoBI	CYCGRG	1 cut(s)	789
Bsp119I	TTCGAA	3 cut(s)	930, 1035, 1127
Bsp1286I	GDGCHC	1 cut(s)	1302
Bsp19I	CCATGG	2 cut(s)	1152, 1466
BspACI	CCGC	5 cut(s)	60, 248, 438, 633, 852
BspANI	GGCC	3 cut(s)	213, 1086, 1515
BspCNI	CTCAG	6 cut(s)	228, 365, 559, 695, 1165, 1210
BspFNI	CGCG	1 cut(s)	248
BspLI	GGNNCC	2 cut(s)	786, 880
BspMAI	CTGCAG	2 cut(s)	1369, 1453
BspPI	GGATC	2 cut(s)	196, 1302
BspT104I	TTCGAA	3 cut(s)	930, 1035, 1127
BsrI	ACTGG	1 cut(s)	632
BssECI	CCNNGG	3 cut(s)	711, 1152, 1466
BssT1I	CCWWGG	2 cut(s)	1152, 1466
Bst2UI	CCWGG	1 cut(s)	712
Bst6I	CTCTTC	3 cut(s)	511, 576, 1416
BstAPI	GCANNNNNTGC	1 cut(s)	39
BstBI	TTCGAA	3 cut(s)	930, 1035, 1127
BstC8I	GCNNGC	3 cut(s)	31, 1287, 1365
BstDEI	CTNAG	6 cut(s)	215, 352, 567, 682, 1173, 1218
BstDSI	CCRYGG	2 cut(s)	1152, 1466
BstF5I	GGATG	1 cut(s)	1121
BstFNI	CGCG	1 cut(s)	248
BstMAI	GTCTC	3 cut(s)	235, 557, 1377
BstMCI	CGRYCG	1 cut(s)	1067
BstMWI	GCNNNNNNNGC	6 cut(s)	39, 48, 57, 1376, 1451, 1454
BstNI	CCWGG	1 cut(s)	712
BstSCI	CCNGG	2 cut(s)	202, 710
BstSFI	CTRYAG	3 cut(s)	1264, 1365, 1449
BstSLI	GKGCMC	1 cut(s)	1302
BstUI	CGCG	1 cut(s)	248
BstV2I	GAAGAC	1 cut(s)	672
BstX2I	RGATCY	2 cut(s)	188, 1307
BstXI	CCANNNNNNTGG	1 cut(s)	1319
BstYI	RGATCY	2 cut(s)	188, 1307
Bsu36I	CCTNAGG	1 cut(s)	215
BsuRI	GGCC	3 cut(s)	213, 1086, 1515
BtgI	CCRYGG	2 cut(s)	1152, 1466
BtsCI	GGATG	1 cut(s)	1121
BtsI	GCAGTG	1 cut(s)	1231
BtsIMutI	CAGTG	2 cut(s)	625, 1231
Cac8I	GCNNGC	3 cut(s)	31, 1287, 1365
CaiI	CAGNNNCTG	1 cut(s)	1373
Csp6I	GTAC	8 cut(s)	484, 647, 812, 889, 966, 1041, 1069, 1236
CviAII	CATG	8 cut(s)	82, 340, 392, 487, 1153, 1439, 1467, 1496
CviQI	GTAC	8 cut(s)	484, 647, 812, 889, 966, 1041, 1069, 1236
DdeI	CTNAG	6 cut(s)	215, 352, 567, 682, 1173, 1218
Eam1104I	CTCTTC	3 cut(s)	511, 576, 1416
EarI	CTCTTC	3 cut(s)	511, 576, 1416
Eco130I	CCWWGG	2 cut(s)	1152, 1466
Eco147I	AGGCCT	1 cut(s)	1515
Eco57I	CTGAAG	3 cut(s)	776, 1014, 1395
Eco81I	CCTNAGG	1 cut(s)	215
Eco88I	CYCGRG	1 cut(s)	789
EcoRI	GAATTC	1 cut(s)	794
EcoRII	CCWGG	1 cut(s)	710
EcoT14I	CCWWGG	2 cut(s)	1152, 1466
ErhI	CCWWGG	2 cut(s)	1152, 1466
FaeI	CATG	8 cut(s)	85, 343, 395, 490, 1156, 1442, 1470, 1499
FaqI	GGGAC	2 cut(s)	787, 934
FatI	CATG	8 cut(s)	81, 339, 391, 486, 1152, 1438, 1466, 1495
FauI	CCCGC	2 cut(s)	626, 845
FokI	GGATG	1 cut(s)	1128
FspBI	CTAG	5 cut(s)	408, 806, 815, 969, 1349
HaeIII	GGCC	3 cut(s)	213, 1086, 1515
HapII	CCGG	2 cut(s)	110, 204
Hin1II	CATG	8 cut(s)	85, 343, 395, 490, 1156, 1442, 1470, 1499
HinfI	GANTC	9 cut(s)	223, 243, 617, 686, 800, 932, 989, 1175, 1354
HpaII	CCGG	2 cut(s)	110, 204
HphI	GGTGA	1 cut(s)	1334
Hpy166II	GTNNAC	1 cut(s)	1016
Hpy188III	TCNNGA	5 cut(s)	14, 278, 662, 791, 1391
Hpy8I	GTNNAC	1 cut(s)	1016
HpyAV	CCTTC	5 cut(s)	389, 812, 1130, 1412, 1473
HpyF10VI	GCNNNNNNNGC	6 cut(s)	39, 48, 57, 1376, 1451, 1454
HpyF3I	CTNAG	6 cut(s)	215, 352, 567, 682, 1173, 1218
Hsp92II	CATG	8 cut(s)	85, 343, 395, 490, 1156, 1442, 1470, 1499
LmnI	GCTCC	6 cut(s)	448, 491, 784, 845, 1414, 1482
LweI	GCATC	4 cut(s)	594, 970, 1106, 1432
MaeI	CTAG	5 cut(s)	408, 806, 815, 969, 1349
MaeIII	GTNAC	4 cut(s)	77, 335, 623, 1097
MfeI	CAATTG	1 cut(s)	519
MflI	RGATCY	2 cut(s)	188, 1307
MhlI	GDGCHC	1 cut(s)	1302
MlyI	GAGTC	3 cut(s)	237, 809, 1184
MmeI	TCCRAC	3 cut(s)	906, 921, 1456
MseI	TTAA	3 cut(s)	638, 726, 1461
MslI	CAYNNNNRTG	1 cut(s)	1494
MspA1I	CMGCKG	2 cut(s)	440, 1448
MspI	CCGG	2 cut(s)	110, 204
MspR9I	CCNGG	2 cut(s)	204, 712
MunI	CAATTG	1 cut(s)	519
Mva1269I	GAATGC	1 cut(s)	1246
MvaI	CCWGG	1 cut(s)	712
MvnI	CGCG	1 cut(s)	248
MwoI	GCNNNNNNNGC	6 cut(s)	39, 48, 57, 1376, 1451, 1454
NciI	CCSGG	1 cut(s)	204
NcoI	CCATGG	2 cut(s)	1152, 1466
NlaIII	CATG	8 cut(s)	85, 343, 395, 490, 1156, 1442, 1470, 1499
NlaIV	GGNNCC	2 cut(s)	786, 880
NmuCI	GTSAC	4 cut(s)	77, 335, 623, 1097
NspV	TTCGAA	3 cut(s)	930, 1035, 1127
PaeR7I	CTCGAG	1 cut(s)	789
PceI	AGGCCT	1 cut(s)	1515
PcsI	WCGNNNNNNNCGW	1 cut(s)	1140
PctI	GAATGC	1 cut(s)	1246
PfeI	GAWTC	6 cut(s)	223, 617, 686, 932, 989, 1354
Ple19I	CGATCG	1 cut(s)	1067
PleI	GAGTC	3 cut(s)	237, 808, 1183
PpsI	GAGTC	3 cut(s)	237, 808, 1183
Psp6I	CCWGG	1 cut(s)	710
PspGI	CCWGG	1 cut(s)	710
PspN4I	GGNNCC	2 cut(s)	786, 880
PstI	CTGCAG	2 cut(s)	1369, 1453
PstNI	CAGNNNCTG	1 cut(s)	1373
PsuI	RGATCY	2 cut(s)	188, 1307
PvuI	CGATCG	1 cut(s)	1067
PvuII	CAGCTG	1 cut(s)	1448
RsaI	GTAC	8 cut(s)	485, 648, 813, 890, 967, 1042, 1070, 1237
RsaNI	GTAC	8 cut(s)	484, 647, 812, 889, 966, 1041, 1069, 1236
RseI	CAYNNNNRTG	1 cut(s)	1494
SaqAI	TTAA	3 cut(s)	638, 726, 1461
ScaI	AGTACT	2 cut(s)	813, 967
SchI	GAGTC	3 cut(s)	237, 809, 1184
ScrFI	CCNGG	2 cut(s)	204, 712
SduI	GDGCHC	1 cut(s)	1302
SfaNI	GCATC	4 cut(s)	594, 970, 1106, 1432
SfcI	CTRYAG	3 cut(s)	1264, 1365, 1449
Sfr274I	CTCGAG	1 cut(s)	789
SfuI	TTCGAA	3 cut(s)	930, 1035, 1127
SlaI	CTCGAG	1 cut(s)	789
SmiMI	CAYNNNNRTG	1 cut(s)	1494
SmlI	CTYRAG	2 cut(s)	789, 895
SmoI	CTYRAG	2 cut(s)	789, 895
SpeI	ACTAGT	1 cut(s)	968
SseBI	AGGCCT	1 cut(s)	1515
SsiI	CCGC	5 cut(s)	60, 248, 438, 633, 852
SspMI	CTAG	5 cut(s)	408, 806, 815, 969, 1349
StuI	AGGCCT	1 cut(s)	1515
StyD4I	CCNGG	2 cut(s)	202, 710
StyI	CCWWGG	2 cut(s)	1152, 1466
TatI	WGTACW	5 cut(s)	811, 888, 965, 1040, 1235
TauI	GCSGC	2 cut(s)	63, 440
TfiI	GAWTC	6 cut(s)	223, 617, 686, 932, 989, 1354
Tru1I	TTAA	3 cut(s)	638, 726, 1461
Tru9I	TTAA	3 cut(s)	638, 726, 1461
TscAI	CASTG	2 cut(s)	632, 1231
TseFI	GTSAC	4 cut(s)	77, 335, 623, 1097
Tsp45I	GTSAC	4 cut(s)	77, 335, 623, 1097
TspDTI	ATGAA	4 cut(s)	98, 356, 408, 756
TspRI	CASTG	2 cut(s)	632, 1231
XapI	RAATTY	2 cut(s)	794, 1031
XhoI	CTCGAG	1 cut(s)	789
XspI	CTAG	5 cut(s)	408, 806, 815, 969, 1349
ZrmI	AGTACT	2 cut(s)	813, 967

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.