Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005811.1

Orthogroup ID

OG0013676

Physical Location & Seq

Genomic Coordinates Reverse (-)

48874 .. 50274

Gene Structure 1401 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005811.1_g000012.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1401 bp

atgaggtctcacttgatcgacaacaattcgacagaggatcaaaaattcatcaacagcagagttaaggtctcccctctcagcaattacactgagacaggtttcgaaactggtcctcaagcaggttatggcctcagggaaaaccccaagaaaacttggagaattgctggttcaagtgaggaaacttcagttgacaacaagctatgcagagaatgtgggaaagggtttcagtcatggaaagctctgattgctcatatgaagtgtcactcaaactcgactactaatagctttgagaacgaacaagattcttggactagcagtaaggccgtggacagccaatctgaaaatgaaactactaatactactaggagaagaactaccacatccaggagaagaagaacaaggtacatggcaacaactactacaacctcttcttctaatttctctattgtaaacaataatgcttcttcatctgttactgagattgagcaagagcaacaggaagaggttgcttggtgtttgatgatgctctcaagagatgtgggtcactggggtggcttgaaaattgttgctgatcttgatcacagtatctctgataacaattcagggttttcggatgctccatcatccctcaagatgaatcgggtttccgaaatcaaggaagctactcttgagacttttaaactgaagaaactaaagaaaaagatgttagatgaggaagtttctgttggtgggttttccaagagtgacaaaaccaagaagaatttgatactcaagaaaactgagttagctgaagctcaattgggttctaacaagttcaattcaagcaacaagagaaagcttcaagatgcttatgatcattcttcaaaaaggagtaagtatgagtgtggtacttgcaacaaggtttttaggtcataccaagctctaggaggccatagagctagtcacaaaaagatcaaaggatgctttgcttctaagattgagagcagtgaacacaccactgagtttgacacagacctctcccctgatcatcccattgcatcagatcacagtaagctcagtaatgtcattgatcatcaagatgatgttgtaaaagttgagagcatcagtacaaagagtaaggggcattcttgtccaatttgcctaaaggttttccccactggtcaagcattgggtggtcacaagagatcacacttgattggtggttcagctgacagtaagagcagccaaagcactatagtgattcccaaaccagcaactcctgaagttagagagtttcttgatctcaaccttcctgctcctgttgaagaagagattagtaccagccatgctgctgctgcacaagccttcaagccatggtgggtaggaaccagccataagccttatgaggctcttgtttcatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2_6

Protein Analysis

466

Amino Acids

51.68

Weight (kDa)

8.84

Isoelectric Point (pI)

54.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013676)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g14270 FvH4_5g14274
malus_domestica	MD06G1199800.v1.1 MD14G1209000.v1.1
prunus_persica	Prupe.5G201400_v2.0.a1
pyrus_communis	pycom06g17660 pycom14g17280
rosa_chinensis	RchiOBHm_Chr7g0182641
rosa_laevigata	RLG00000005112
rosa_multiflora	Rmu_sc0005811.1_g000012 Rmu_sc0027411.1_g000002
rosa_roxburghii	Rroxscaffold_3G00271100
rosa_rugosa	Rorug06G0448700
rosa_samantha	Rh7AG052600 Rh7BG052200 Rh7CG053700 Rh7DG051900
rosa_wichuraiana	Rw7G004280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	110
AclWI	GGATC	1 cut(s)	45
AcsI	RAATTY	2 cut(s)	44, 760
AcuI	CTGAAG	4 cut(s)	168, 704, 810, 1281
AfaI	GTAC	4 cut(s)	404, 889, 1108, 1318
AfiI	CCNNNNNNNGG	2 cut(s)	119, 384
AgsI	TTSAA	8 cut(s)	171, 559, 817, 822, 842, 864, 1304, 1348
AjnI	CCWGG	1 cut(s)	383
AjuI	GAANNNNNNNTTGG	2 cut(s)	708, 740
AleI	CACNNNNGTG	2 cut(s)	549, 1235
Alw26I	GTCTC	4 cut(s)	12, 73, 86, 665
AlwI	GGATC	1 cut(s)	45
AoxI	GGCC	3 cut(s)	127, 321, 928
ApeKI	GCWGC	4 cut(s)	1221, 1328, 1331, 1334
ApoI	RAATTY	2 cut(s)	44, 760
AspS9I	GGNCC	1 cut(s)	110
AsuII	TTCGAA	1 cut(s)	102
AvaII	GGWCC	1 cut(s)	110
AxyI	CCTNAGG	1 cut(s)	131
BbvI	GCAGC	4 cut(s)	1233, 1315, 1318, 1321
BccI	CCATC	1 cut(s)	628
BceAI	ACGGC	1 cut(s)	308
BciT130I	CCWGG	1 cut(s)	385
BclI	TGATCA	4 cut(s)	577, 853, 1024, 1069
BcoDI	GTCTC	4 cut(s)	12, 73, 86, 665
BfaI	CTAG	4 cut(s)	312, 363, 923, 939
BfmI	CTRYAG	1 cut(s)	1233
BfuAI	ACCTGC	1 cut(s)	110
BisI	GCNGC	4 cut(s)	1222, 1329, 1332, 1335
BlsI	GCNGC	4 cut(s)	1223, 1330, 1333, 1336
Bme1390I	CCNGG	1 cut(s)	385
Bme18I	GGWCC	1 cut(s)	110
BmgT120I	GGNCC	1 cut(s)	110
BmiI	GGNNCC	1 cut(s)	1366
BmrFI	CCNGG	1 cut(s)	385
BmrI	ACTGGG	1 cut(s)	556
BmsI	GCATC	6 cut(s)	513, 604, 835, 950, 1046, 1110
BmuI	ACTGGG	1 cut(s)	556
Bpu14I	TTCGAA	1 cut(s)	102
BpuEI	CTTGAG	5 cut(s)	99, 514, 614, 689, 755
BsaBI	GATNNNNATC	1 cut(s)	576
BsaI	GGTCTC	2 cut(s)	12, 73
BsaJI	CCNNGG	2 cut(s)	324, 1352
Bsc4I	CCNNNNNNNGG	2 cut(s)	119, 384
Bse1I	ACTGG	3 cut(s)	112, 551, 1162
Bse21I	CCTNAGG	1 cut(s)	131
Bse3DI	GCAATG	1 cut(s)	1032
Bse8I	GATNNNNATC	1 cut(s)	576
BseBI	CCWGG	1 cut(s)	385
BseDI	CCNNGG	2 cut(s)	324, 1352
BseGI	GGATG	5 cut(s)	380, 619, 623, 965, 1027
BseJI	GATNNNNATC	1 cut(s)	576
BseLI	CCNNNNNNNGG	2 cut(s)	119, 384
BseMI	GCAATG	1 cut(s)	1032
BseMII	CTCAG	7 cut(s)	81, 91, 145, 468, 771, 990, 1069
BseNI	ACTGG	3 cut(s)	112, 551, 1162
BseXI	GCAGC	4 cut(s)	1233, 1315, 1318, 1321
BsgI	GTGCAG	1 cut(s)	1320
BshFI	GGCC	3 cut(s)	129, 323, 930
BslI	CCNNNNNNNGG	2 cut(s)	119, 384
BsmAI	GTCTC	4 cut(s)	12, 73, 86, 665
BsmI	GAATGC	1 cut(s)	1123
BsnI	GGCC	3 cut(s)	129, 323, 930
Bso31I	GGTCTC	2 cut(s)	12, 73
Bsp119I	TTCGAA	1 cut(s)	102
Bsp19I	CCATGG	1 cut(s)	1352
BspANI	GGCC	3 cut(s)	129, 323, 930
BspCNI	CTCAG	7 cut(s)	82, 90, 144, 469, 772, 991, 1068
BspLI	GGNNCC	1 cut(s)	1366
BspMI	ACCTGC	1 cut(s)	110
BspPI	GGATC	1 cut(s)	45
BspT104I	TTCGAA	1 cut(s)	102
BspTNI	GGTCTC	2 cut(s)	12, 73
BsrDI	GCAATG	1 cut(s)	1032
BsrI	ACTGG	3 cut(s)	112, 551, 1162
BssECI	CCNNGG	2 cut(s)	324, 1352
BssT1I	CCWWGG	1 cut(s)	1352
Bst2UI	CCWGG	1 cut(s)	385
Bst4CI	ACNGT	3 cut(s)	584, 1049, 1214
Bst6I	CTCTTC	3 cut(s)	433, 495, 1302
BstBI	TTCGAA	1 cut(s)	102
BstDEI	CTNAG	8 cut(s)	77, 90, 131, 477, 780, 972, 999, 1055
BstDSI	CCRYGG	2 cut(s)	324, 1352
BstENI	CCTNNNNNAGG	1 cut(s)	117
BstF5I	GGATG	5 cut(s)	380, 619, 623, 965, 1027
BstMAI	GTCTC	4 cut(s)	12, 73, 86, 665
BstMWI	GCNNNNNNNGC	4 cut(s)	245, 1227, 1334, 1340
BstNI	CCWGG	1 cut(s)	385
BstSCI	CCNGG	1 cut(s)	383
BstSFI	CTRYAG	1 cut(s)	1233
BstV1I	GCAGC	4 cut(s)	1233, 1315, 1318, 1321
Bsu36I	CCTNAGG	1 cut(s)	131
BsuRI	GGCC	3 cut(s)	129, 323, 930
BtgI	CCRYGG	2 cut(s)	324, 1352
BtsCI	GGATG	5 cut(s)	380, 619, 623, 965, 1027
BtsI	GCAGTG	1 cut(s)	991
BtsIMutI	CAGTG	5 cut(s)	87, 544, 991, 996, 1155
BveI	ACCTGC	1 cut(s)	110
Cfr13I	GGNCC	1 cut(s)	110
Csp6I	GTAC	4 cut(s)	403, 888, 1107, 1317
CspCI	CAANNNNNGTGG	4 cut(s)	519, 554, 985, 1020
CviAII	CATG	4 cut(s)	231, 406, 1325, 1353
CviQI	GTAC	4 cut(s)	403, 888, 1107, 1317
DdeI	CTNAG	8 cut(s)	77, 90, 131, 477, 780, 972, 999, 1055
DraI	TTTAAA	1 cut(s)	679
Eam1104I	CTCTTC	3 cut(s)	433, 495, 1302
EarI	CTCTTC	3 cut(s)	433, 495, 1302
Eco130I	CCWWGG	1 cut(s)	1352
Eco31I	GGTCTC	2 cut(s)	12, 73
Eco47I	GGWCC	1 cut(s)	110
Eco57I	CTGAAG	4 cut(s)	168, 704, 810, 1281
Eco81I	CCTNAGG	1 cut(s)	131
EcoNI	CCTNNNNNAGG	1 cut(s)	117
EcoRII	CCWGG	1 cut(s)	383
EcoT14I	CCWWGG	1 cut(s)	1352
ErhI	CCWWGG	1 cut(s)	1352
FaeI	CATG	4 cut(s)	234, 409, 1328, 1356
FalI	AAGNNNNNCTT	2 cut(s)	651, 683
FatI	CATG	4 cut(s)	230, 405, 1324, 1352
FauNDI	CATATG	1 cut(s)	252
FbaI	TGATCA	4 cut(s)	577, 853, 1024, 1069
Fnu4HI	GCNGC	4 cut(s)	1222, 1329, 1332, 1335
FokI	GGATG	5 cut(s)	367, 610, 626, 972, 1014
Fsp4HI	GCNGC	4 cut(s)	1222, 1329, 1332, 1335
FspBI	CTAG	4 cut(s)	312, 363, 923, 939
GluI	GCNGC	4 cut(s)	1222, 1329, 1332, 1335
HaeIII	GGCC	3 cut(s)	129, 323, 930
Hin1II	CATG	4 cut(s)	234, 409, 1328, 1356
HincII	GTYRAC	1 cut(s)	190
HindII	GTYRAC	1 cut(s)	190
HindIII	AAGCTT	1 cut(s)	836
HinfI	GANTC	3 cut(s)	302, 637, 1240
Hpy166II	GTNNAC	4 cut(s)	190, 328, 451, 989
Hpy188I	TCNGA	6 cut(s)	243, 340, 592, 613, 649, 1042
Hpy188III	TCNNGA	9 cut(s)	531, 575, 631, 668, 772, 842, 1076, 1259, 1277
Hpy8I	GTNNAC	4 cut(s)	190, 328, 451, 989
HpyAV	CCTTC	2 cut(s)	1298, 1354
HpyCH4III	ACNGT	3 cut(s)	584, 1049, 1214
HpyCH4V	TGCA	4 cut(s)	204, 894, 1037, 1337
HpyF10VI	GCNNNNNNNGC	4 cut(s)	245, 1227, 1334, 1340
HpyF3I	CTNAG	8 cut(s)	77, 90, 131, 477, 780, 972, 999, 1055
Hsp92II	CATG	4 cut(s)	234, 409, 1328, 1356
Ksp22I	TGATCA	4 cut(s)	577, 853, 1024, 1069
LmnI	GCTCC	2 cut(s)	622, 1300
Lsp1109I	GCAGC	4 cut(s)	1233, 1315, 1318, 1321
LweI	GCATC	6 cut(s)	513, 604, 835, 950, 1046, 1110
MaeI	CTAG	4 cut(s)	312, 363, 923, 939
MaeIII	GTNAC	6 cut(s)	260, 472, 542, 743, 941, 1175
MfeI	CAATTG	1 cut(s)	797
MseI	TTAA	2 cut(s)	63, 678
MslI	CAYNNNNRTG	3 cut(s)	549, 1077, 1235
MspA1I	CMGCKG	1 cut(s)	1208
MspR9I	CCNGG	1 cut(s)	385
MunI	CAATTG	1 cut(s)	797
Mva1269I	GAATGC	1 cut(s)	1123
MvaI	CCWGG	1 cut(s)	385
MwoI	GCNNNNNNNGC	4 cut(s)	245, 1227, 1334, 1340
NcoI	CCATGG	1 cut(s)	1352
NdeI	CATATG	1 cut(s)	252
NlaIII	CATG	4 cut(s)	234, 409, 1328, 1356
NlaIV	GGNNCC	1 cut(s)	1366
NmuCI	GTSAC	5 cut(s)	260, 542, 743, 941, 1175
NspV	TTCGAA	1 cut(s)	102
OliI	CACNNNNGTG	2 cut(s)	549, 1235
PctI	GAATGC	1 cut(s)	1123
PfeI	GAWTC	3 cut(s)	302, 637, 1240
PfoI	TCCNGGA	1 cut(s)	383
PkrI	GCNGC	4 cut(s)	1223, 1330, 1333, 1336
Psp6I	CCWGG	1 cut(s)	383
PspGI	CCWGG	1 cut(s)	383
PspN4I	GGNNCC	1 cut(s)	1366
PspPI	GGNCC	1 cut(s)	110
PvuII	CAGCTG	1 cut(s)	1208
RsaI	GTAC	4 cut(s)	404, 889, 1108, 1318
RsaNI	GTAC	4 cut(s)	403, 888, 1107, 1317
RseI	CAYNNNNRTG	3 cut(s)	549, 1077, 1235
SaqAI	TTAA	2 cut(s)	63, 678
SatI	GCNGC	4 cut(s)	1222, 1329, 1332, 1335
Sau96I	GGNCC	1 cut(s)	110
ScrFI	CCNGG	1 cut(s)	385
SfaNI	GCATC	6 cut(s)	513, 604, 835, 950, 1046, 1110
SfcI	CTRYAG	1 cut(s)	1233
SfuI	TTCGAA	1 cut(s)	102
SinI	GGWCC	1 cut(s)	110
SmiMI	CAYNNNNRTG	3 cut(s)	549, 1077, 1235
SmlI	CTYRAG	5 cut(s)	114, 529, 629, 668, 770
SmoI	CTYRAG	5 cut(s)	114, 529, 629, 668, 770
SspMI	CTAG	4 cut(s)	312, 363, 923, 939
StyD4I	CCNGG	1 cut(s)	383
StyI	CCWWGG	1 cut(s)	1352
TaaI	ACNGT	3 cut(s)	584, 1049, 1214
TaqI	TCGA	4 cut(s)	18, 29, 102, 272
TatI	WGTACW	1 cut(s)	1106
TfiI	GAWTC	3 cut(s)	302, 637, 1240
Tru1I	TTAA	2 cut(s)	63, 678
Tru9I	TTAA	2 cut(s)	63, 678
TscAI	CASTG	5 cut(s)	94, 551, 991, 1003, 1162
TseFI	GTSAC	5 cut(s)	260, 542, 743, 941, 1175
TseI	GCWGC	4 cut(s)	1221, 1328, 1331, 1334
Tsp45I	GTSAC	5 cut(s)	260, 542, 743, 941, 1175
TspDTI	ATGAA	6 cut(s)	37, 269, 360, 456, 650, 1386
TspRI	CASTG	5 cut(s)	94, 551, 991, 1003, 1162
VpaK11BI	GGWCC	1 cut(s)	110
XagI	CCTNNNNNAGG	1 cut(s)	117
XapI	RAATTY	2 cut(s)	44, 760
XspI	CTAG	4 cut(s)	312, 363, 923, 939

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.