FvH4_5g14580

Two-component response regulator-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0015629
Physical Location & Seq
Reverse (-)
8277582 .. 8279648
2067 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g14580.t2

Sequence Viewer

Length: 588 bp
ATGGAGGAGTGCAAGCAGATGACAGGCCAAGCTAAGAGCAGGAACAGTGGAACTTCCATTGATCGTAGTCGAGTAAAAATTTTGTTGTGTGACCGCGACGCTGAGAGTTGTGAAGAGGTTTCAACACTACTGACAGCATGCTGTTATCAGGTAATATCAGTTAGCTCAGCTGTGAAGGTTGTGGATGCTCTCGATGCAGAGTGGTCTTCCATTGATATTATACTTGCTGCAGTCGACCTCCCACTAGAATCAAGCACTGCGATGCTGAAGTATATCATGCAAGATAGACATTTCAAATGTATTCCAGTAATCATACTGTCAACAAACCAAGAGTCCTCTTTTCTTCTCAATTTCTTAAGATTGGGCGCAACCGATTACCTGGTCAAGCCATTATGCATCGATGAGATACTGAACTTGTGGATGCACAGCTGGAGGCAGCCTAAGGTACTTGACTGGTTGCCACAGAACAACTTCCAAACTTCAGGTCAAGAGAACAGCAATATCTTTGTCTGTAATGACACCGATGAGGAGTTCCTAGAGAATACGATGCAAAAGTTGTATGTATCAAAAAGGAACTTGAAAGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
ko04712 map04712
Pfam Domains
Protein Families
CCT IQ Response_reg

Protein Analysis

196

Amino Acids

22.22

Weight (kDa)

4.86

Isoelectric Point (pI)

46.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Response_reg PF00072 27 - 144 1.2e-09 Response regulator receiver domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015629)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g14580 FvH4_5g14580
malus_domestica MD14G1204500.v1.1
prunus_persica Prupe.5G197800_v2.0.a1 Prupe.5G197800_v2.0.a1
pyrus_communis pycom14g16900
rosa_chinensis RchiOBHm_Chr7g0181971 RchiOBHm_Chr7g0181991
rosa_laevigata RLG00000005163
rosa_roxburghii Rroxscaffold_3G00271640
rosa_samantha Rh7AG047300 Rh7BG047200 Rh7CG047500 Rh7DG046500
rosa_wichuraiana Rw0G019680 Rw7G003920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 234
AccII CGCG 1 cut(s) 96
AciI CCGC 1 cut(s) 94
AcsI RAATTY 1 cut(s) 78
AcuI CTGAAG 2 cut(s) 287, 465
AfaI GTAC 1 cut(s) 447
AflII CTTAAG 1 cut(s) 355
AgsI TTSAA 3 cut(s) 123, 295, 580
AjnI CCWGG 1 cut(s) 378
AluBI AGCT 4 cut(s) 32, 165, 170, 429
AluI AGCT 4 cut(s) 32, 165, 170, 429
AoxI GGCC 1 cut(s) 25
ApeKI GCWGC 2 cut(s) 227, 436
ApoI RAATTY 1 cut(s) 78
ArsI GACNNNNNNTTYG 4 cut(s) 317, 349, 469, 501
Asp700I GAANNNNTTC 1 cut(s) 470
AspLEI GCGC 1 cut(s) 368
AxyI CCTNAGG 1 cut(s) 441
BbsI GAAGAC 1 cut(s) 198
BbvI GCAGC 2 cut(s) 214, 448
BciT130I CCWGG 1 cut(s) 380
BfaI CTAG 2 cut(s) 245, 536
BfmI CTRYAG 1 cut(s) 228
BfrI CTTAAG 1 cut(s) 355
BisI GCNGC 2 cut(s) 228, 437
BlpI GCTNAGC 1 cut(s) 166
BlsI GCNGC 2 cut(s) 229, 438
Bme1390I CCNGG 1 cut(s) 380
BmrFI CCNGG 1 cut(s) 380
BmsI GCATC 6 cut(s) 175, 184, 252, 405, 411, 537
BpiI GAAGAC 1 cut(s) 198
BpmI CTGGAG 1 cut(s) 451
Bpu1102I GCTNAGC 1 cut(s) 166
Bsa29I ATCGAT 1 cut(s) 399
Bse1I ACTGG 2 cut(s) 305, 458
Bse21I CCTNAGG 1 cut(s) 441
BseBI CCWGG 1 cut(s) 380
BseCI ATCGAT 1 cut(s) 399
BseGI GGATG 2 cut(s) 190, 426
BseMII CTCAG 2 cut(s) 93, 180
BseNI ACTGG 2 cut(s) 305, 458
BseRI GAGGAG 2 cut(s) 20, 542
BseXI GCAGC 2 cut(s) 214, 448
Bsh1236I CGCG 1 cut(s) 96
BshFI GGCC 1 cut(s) 27
BshVI ATCGAT 1 cut(s) 399
BsnI GGCC 1 cut(s) 27
Bsp143I GATC 1 cut(s) 61
Bsp1720I GCTNAGC 1 cut(s) 166
BspACI CCGC 1 cut(s) 94
BspANI GGCC 1 cut(s) 27
BspCNI CTCAG 2 cut(s) 94, 179
BspDI ATCGAT 1 cut(s) 399
BspFNI CGCG 1 cut(s) 96
BspMAI CTGCAG 1 cut(s) 232
BspTI CTTAAG 1 cut(s) 355
BsrI ACTGG 2 cut(s) 305, 458
BssMI GATC 1 cut(s) 61
Bst2UI CCWGG 1 cut(s) 380
Bst4CI ACNGT 2 cut(s) 47, 318
Bst6I CTCTTC 1 cut(s) 108
BstAFI CTTAAG 1 cut(s) 355
BstC8I GCNNGC 2 cut(s) 14, 139
BstDEI CTNAG 4 cut(s) 33, 102, 166, 441
BstF5I GGATG 2 cut(s) 190, 426
BstFNI CGCG 1 cut(s) 96
BstHHI GCGC 1 cut(s) 368
BstKTI GATC 1 cut(s) 64
BstMBI GATC 1 cut(s) 61
BstMWI GCNNNNNNNGC 1 cut(s) 194
BstNI CCWGG 1 cut(s) 380
BstNSI RCATGY 1 cut(s) 141
BstSCI CCNGG 1 cut(s) 378
BstSFI CTRYAG 1 cut(s) 228
BstUI CGCG 1 cut(s) 96
BstV1I GCAGC 2 cut(s) 214, 448
BstV2I GAAGAC 1 cut(s) 198
Bsu15I ATCGAT 1 cut(s) 399
Bsu36I CCTNAGG 1 cut(s) 441
BsuRI GGCC 1 cut(s) 27
BsuTUI ATCGAT 1 cut(s) 399
BtgZI GCGATG 1 cut(s) 275
BtsCI GGATG 2 cut(s) 190, 426
BtsI GCAGTG 1 cut(s) 255
BtsIMutI CAGTG 2 cut(s) 52, 255
Cac8I GCNNGC 2 cut(s) 14, 139
CfoI GCGC 1 cut(s) 368
ClaI ATCGAT 1 cut(s) 399
CseI GACGC 1 cut(s) 107
CsiI ACCWGGT 1 cut(s) 378
Csp6I GTAC 1 cut(s) 446
CviAII CATG 2 cut(s) 138, 277
CviJI RGCY 7 cut(s) 27, 32, 165, 170, 388, 429, 439
CviKI_1 RGCY 7 cut(s) 27, 32, 165, 170, 388, 429, 439
CviQI GTAC 1 cut(s) 446
DdeI CTNAG 4 cut(s) 33, 102, 166, 441
DpnI GATC 1 cut(s) 63
DpnII GATC 1 cut(s) 61
Eam1104I CTCTTC 1 cut(s) 108
EarI CTCTTC 1 cut(s) 108
Eco57I CTGAAG 2 cut(s) 287, 465
Eco81I CCTNAGG 1 cut(s) 441
EcoRII CCWGG 1 cut(s) 378
EcoT22I ATGCAT 1 cut(s) 398
FaeI CATG 2 cut(s) 141, 280
FaiI YATR 7 cut(s) 139, 221, 273, 278, 314, 394, 561
FatI CATG 2 cut(s) 137, 276
FblI GTMKAC 1 cut(s) 234
Fnu4HI GCNGC 2 cut(s) 228, 437
FokI GGATG 2 cut(s) 197, 433
Fsp4HI GCNGC 2 cut(s) 228, 437
FspBI CTAG 2 cut(s) 245, 536
GlaI GCGC 1 cut(s) 367
GluI GCNGC 2 cut(s) 228, 437
GsuI CTGGAG 1 cut(s) 451
HaeIII GGCC 1 cut(s) 27
HgaI GACGC 1 cut(s) 107
HhaI GCGC 1 cut(s) 368
Hin1II CATG 2 cut(s) 141, 280
Hin6I GCGC 1 cut(s) 366
HinP1I GCGC 1 cut(s) 366
HincII GTYRAC 2 cut(s) 235, 321
HindII GTYRAC 2 cut(s) 235, 321
HinfI GANTC 2 cut(s) 248, 332
Hpy166II GTNNAC 2 cut(s) 235, 321
Hpy188III TCNNGA 2 cut(s) 191, 488
Hpy8I GTNNAC 2 cut(s) 235, 321
Hpy99I CGWCG 1 cut(s) 101
HpyAV CCTTC 1 cut(s) 169
HpyCH4III ACNGT 2 cut(s) 47, 318
HpyCH4V TGCA 7 cut(s) 12, 197, 230, 280, 396, 424, 550
HpyF10VI GCNNNNNNNGC 1 cut(s) 194
HpyF3I CTNAG 4 cut(s) 33, 102, 166, 441
Hsp92II CATG 2 cut(s) 141, 280
HspAI GCGC 1 cut(s) 366
Kzo9I GATC 1 cut(s) 61
LpnPI CCDG 9 cut(s) 9, 25, 134, 318, 365, 392, 415, 439, 468
Lsp1109I GCAGC 2 cut(s) 214, 448
LweI GCATC 6 cut(s) 175, 184, 252, 405, 411, 537
MabI ACCWGGT 1 cut(s) 378
MaeI CTAG 2 cut(s) 245, 536
MaeIII GTNAC 1 cut(s) 89
MalI GATC 1 cut(s) 63
MboI GATC 1 cut(s) 61
MboII GAAGA 3 cut(s) 125, 198, 335
MluCI AATT 2 cut(s) 78, 349
MlyI GAGTC 1 cut(s) 341
MnlI CCTC 5 cut(s) 109, 248, 346, 426, 520
Mph1103I ATGCAT 1 cut(s) 398
MroXI GAANNNNTTC 1 cut(s) 470
MseI TTAA 1 cut(s) 356
MslI CAYNNNNRTG 1 cut(s) 260
MspA1I CMGCKG 2 cut(s) 170, 429
MspCI CTTAAG 1 cut(s) 355
MspR9I CCNGG 1 cut(s) 380
MvaI CCWGG 1 cut(s) 380
MvnI CGCG 1 cut(s) 96
MwoI GCNNNNNNNGC 1 cut(s) 194
NdeII GATC 1 cut(s) 61
NlaIII CATG 2 cut(s) 141, 280
NmuCI GTSAC 1 cut(s) 89
NsiI ATGCAT 1 cut(s) 398
NspI RCATGY 1 cut(s) 141
PaeI GCATGC 1 cut(s) 141
PdmI GAANNNNTTC 1 cut(s) 470
PfeI GAWTC 1 cut(s) 248
PkrI GCNGC 2 cut(s) 229, 438
PleI GAGTC 1 cut(s) 340
PpsI GAGTC 1 cut(s) 340
Psp6I CCWGG 1 cut(s) 378
PspGI CCWGG 1 cut(s) 378
PstI CTGCAG 1 cut(s) 232
PvuII CAGCTG 2 cut(s) 170, 429
RsaI GTAC 1 cut(s) 447
RsaNI GTAC 1 cut(s) 446
RseI CAYNNNNRTG 1 cut(s) 260
SalI GTCGAC 1 cut(s) 233
SaqAI TTAA 1 cut(s) 356
SatI GCNGC 2 cut(s) 228, 437
Sau3AI GATC 1 cut(s) 61
SchI GAGTC 1 cut(s) 341
ScrFI CCNGG 1 cut(s) 380
SexAI ACCWGGT 1 cut(s) 378
SfaNI GCATC 6 cut(s) 175, 184, 252, 405, 411, 537
SfcI CTRYAG 1 cut(s) 228
SmiMI CAYNNNNRTG 1 cut(s) 260
SmlI CTYRAG 1 cut(s) 355
SmoI CTYRAG 1 cut(s) 355
SphI GCATGC 1 cut(s) 141
Sse9I AATT 2 cut(s) 78, 349
SsiI CCGC 1 cut(s) 94
SspMI CTAG 2 cut(s) 245, 536
StyD4I CCNGG 1 cut(s) 378
TaaI ACNGT 2 cut(s) 47, 318
TaqI TCGA 4 cut(s) 70, 192, 234, 399
TasI AATT 2 cut(s) 78, 349
TfiI GAWTC 1 cut(s) 248
Tru1I TTAA 1 cut(s) 356
Tru9I TTAA 1 cut(s) 356
TscAI CASTG 2 cut(s) 52, 262
TseFI GTSAC 1 cut(s) 89
TseI GCWGC 2 cut(s) 227, 436
Tsp45I GTSAC 1 cut(s) 89
TspRI CASTG 2 cut(s) 52, 262
Vha464I CTTAAG 1 cut(s) 355
XapI RAATTY 1 cut(s) 78
XceI RCATGY 1 cut(s) 141
XmiI GTMKAC 1 cut(s) 234
XmnI GAANNNNTTC 1 cut(s) 470
XspI CTAG 2 cut(s) 245, 536
Zsp2I ATGCAT 1 cut(s) 398
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.