RLG00000005163

Two-component response regulator-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0015629
Physical Location & Seq
Reverse (-)
65564670 .. 65566053
1384 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000005163

Sequence Viewer

Length: 558 bp
ATGACAAGCCAAGTTAACAGCAAGAACAATGGAACTTCCGTTGATCGTAGTCGAGTAAAAATTTTGTTGTGTGACCGCAACGCTGAGAGTTGTGAAGAGGTTTCGACACTACTGACAGCATGCTGTTATCAGGTAATTTCAGTTGGCTCAGCTGTGAAGGTTGTGGATGCTCTCAATGAAGAGTGGTCTTCAATTGATATTATACTTGCTGCAGTTGACCTCCCAATAGAATCAAGCATTGAGATGCTGAAGTATATCATGCAAGATAGACATTTCAAATGTATTCCAGTGATCATGATGTCAACAAACCATGAGTTCTCTTTTCTTCTCAATTTCTTAAGATTGGGGGCAACTGATTACCTGGTCAAGCCATTATGCATCGATGAGATACTGAACTTGTGGATGCACTGCTGGAGGCAGCCAAAGGAACTTGACTGGTTGCCACAGAACAGCTTGAAAATTTCAAGTGAAGACAGCAGCAATATCTTTGTCTATAATGACACAGATGAGTTCCTAGAGAATACGATGCAAACGTTGTGTGTATCAAAAAGGAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
ko04712 map04712
Pfam Domains
Protein Families
CCT IQ Response_reg

Protein Analysis

186

Amino Acids

21.17

Weight (kDa)

4.77

Isoelectric Point (pI)

49.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Response_reg PF00072 21 - 132 1.8e-11 Response regulator receiver domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015629)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g14580 FvH4_5g14580
malus_domestica MD14G1204500.v1.1
prunus_persica Prupe.5G197800_v2.0.a1 Prupe.5G197800_v2.0.a1
pyrus_communis pycom14g16900
rosa_chinensis RchiOBHm_Chr7g0181971 RchiOBHm_Chr7g0181991
rosa_laevigata RLG00000005163
rosa_roxburghii Rroxscaffold_3G00271640
rosa_samantha Rh7AG047300 Rh7BG047200 Rh7CG047500 Rh7DG046500
rosa_wichuraiana Rw0G019680 Rw7G003920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 76
AclI AACGTT 1 cut(s) 533
AcsI RAATTY 2 cut(s) 60, 459
AcuI CTGAAG 1 cut(s) 269
AflII CTTAAG 1 cut(s) 337
AgsI TTSAA 4 cut(s) 192, 277, 457, 465
AjnI CCWGG 1 cut(s) 360
AluBI AGCT 2 cut(s) 152, 453
AluI AGCT 2 cut(s) 152, 453
ApeKI GCWGC 3 cut(s) 209, 418, 477
ApoI RAATTY 2 cut(s) 60, 459
BbsI GAAGAC 2 cut(s) 180, 477
BbvI GCAGC 3 cut(s) 196, 430, 489
BciT130I CCWGG 1 cut(s) 362
BclI TGATCA 1 cut(s) 291
BfaI CTAG 2 cut(s) 515, 556
BfmI CTRYAG 1 cut(s) 210
BfrI CTTAAG 1 cut(s) 337
BisI GCNGC 3 cut(s) 210, 419, 478
BlpI GCTNAGC 1 cut(s) 148
BlsI GCNGC 3 cut(s) 211, 420, 479
Bme1390I CCNGG 1 cut(s) 362
BmrFI CCNGG 1 cut(s) 362
BmsI GCATC 5 cut(s) 157, 234, 387, 393, 516
BpiI GAAGAC 2 cut(s) 180, 477
BpmI CTGGAG 1 cut(s) 433
Bpu1102I GCTNAGC 1 cut(s) 148
Bsa29I ATCGAT 1 cut(s) 381
Bse1I ACTGG 2 cut(s) 287, 440
BseBI CCWGG 1 cut(s) 362
BseCI ATCGAT 1 cut(s) 381
BseGI GGATG 2 cut(s) 172, 408
BseMII CTCAG 2 cut(s) 75, 162
BseNI ACTGG 2 cut(s) 287, 440
BseXI GCAGC 3 cut(s) 196, 430, 489
BshVI ATCGAT 1 cut(s) 381
Bsp143I GATC 2 cut(s) 43, 291
Bsp1720I GCTNAGC 1 cut(s) 148
BspACI CCGC 1 cut(s) 76
BspCNI CTCAG 2 cut(s) 76, 161
BspDI ATCGAT 1 cut(s) 381
BspHI TCATGA 1 cut(s) 294
BspMAI CTGCAG 1 cut(s) 214
BspTI CTTAAG 1 cut(s) 337
BsrI ACTGG 2 cut(s) 287, 440
BssMI GATC 2 cut(s) 43, 291
Bst2UI CCWGG 1 cut(s) 362
Bst6I CTCTTC 2 cut(s) 90, 174
BstAFI CTTAAG 1 cut(s) 337
BstC8I GCNNGC 1 cut(s) 121
BstDEI CTNAG 2 cut(s) 84, 148
BstF5I GGATG 2 cut(s) 172, 408
BstKTI GATC 2 cut(s) 46, 294
BstMBI GATC 2 cut(s) 43, 291
BstNI CCWGG 1 cut(s) 362
BstNSI RCATGY 1 cut(s) 123
BstSCI CCNGG 1 cut(s) 360
BstSFI CTRYAG 1 cut(s) 210
BstV1I GCAGC 3 cut(s) 196, 430, 489
BstV2I GAAGAC 2 cut(s) 180, 477
Bsu15I ATCGAT 1 cut(s) 381
BsuTUI ATCGAT 1 cut(s) 381
BtsCI GGATG 2 cut(s) 172, 408
BtsI GCAGTG 1 cut(s) 406
BtsIMutI CAGTG 2 cut(s) 294, 406
Cac8I GCNNGC 1 cut(s) 121
CciI TCATGA 1 cut(s) 294
ClaI ATCGAT 1 cut(s) 381
CsiI ACCWGGT 1 cut(s) 360
CviAII CATG 4 cut(s) 120, 259, 295, 311
CviJI RGCY 6 cut(s) 9, 147, 152, 370, 421, 453
CviKI_1 RGCY 6 cut(s) 9, 147, 152, 370, 421, 453
DdeI CTNAG 2 cut(s) 84, 148
DpnI GATC 2 cut(s) 45, 293
DpnII GATC 2 cut(s) 43, 291
Eam1104I CTCTTC 2 cut(s) 90, 174
EarI CTCTTC 2 cut(s) 90, 174
Eco57I CTGAAG 1 cut(s) 269
EcoRII CCWGG 1 cut(s) 360
EcoT22I ATGCAT 1 cut(s) 380
FaeI CATG 4 cut(s) 123, 262, 298, 314
FaiI YATR 8 cut(s) 121, 203, 255, 260, 296, 312, 376, 495
FatI CATG 4 cut(s) 119, 258, 294, 310
FbaI TGATCA 1 cut(s) 291
Fnu4HI GCNGC 3 cut(s) 210, 419, 478
FokI GGATG 2 cut(s) 179, 415
Fsp4HI GCNGC 3 cut(s) 210, 419, 478
FspBI CTAG 2 cut(s) 515, 556
GluI GCNGC 3 cut(s) 210, 419, 478
GsuI CTGGAG 1 cut(s) 433
Hin1II CATG 4 cut(s) 123, 262, 298, 314
HincII GTYRAC 3 cut(s) 16, 217, 303
HindII GTYRAC 3 cut(s) 16, 217, 303
HinfI GANTC 1 cut(s) 230
HpaI GTTAAC 1 cut(s) 16
Hpy166II GTNNAC 3 cut(s) 16, 217, 303
Hpy188III TCNNGA 1 cut(s) 295
Hpy8I GTNNAC 3 cut(s) 16, 217, 303
HpyAV CCTTC 1 cut(s) 151
HpyCH4IV ACGT 1 cut(s) 533
HpyCH4V TGCA 5 cut(s) 212, 262, 378, 406, 529
HpyF3I CTNAG 2 cut(s) 84, 148
HpySE526I ACGT 1 cut(s) 533
Hsp92II CATG 4 cut(s) 123, 262, 298, 314
Ksp22I TGATCA 1 cut(s) 291
KspAI GTTAAC 1 cut(s) 16
Kzo9I GATC 2 cut(s) 43, 291
LpnPI CCDG 6 cut(s) 116, 300, 347, 374, 397, 421
Lsp1109I GCAGC 3 cut(s) 196, 430, 489
LweI GCATC 5 cut(s) 157, 234, 387, 393, 516
MabI ACCWGGT 1 cut(s) 360
MaeI CTAG 2 cut(s) 515, 556
MaeII ACGT 1 cut(s) 533
MaeIII GTNAC 1 cut(s) 71
MalI GATC 2 cut(s) 45, 293
MboI GATC 2 cut(s) 43, 291
MboII GAAGA 5 cut(s) 107, 180, 191, 317, 482
MfeI CAATTG 1 cut(s) 192
MluCI AATT 5 cut(s) 60, 135, 192, 331, 459
MnlI CCTC 3 cut(s) 91, 230, 408
Mph1103I ATGCAT 1 cut(s) 380
MseI TTAA 2 cut(s) 15, 338
MslI CAYNNNNRTG 1 cut(s) 242
MspA1I CMGCKG 1 cut(s) 152
MspCI CTTAAG 1 cut(s) 337
MspR9I CCNGG 1 cut(s) 362
MunI CAATTG 1 cut(s) 192
MvaI CCWGG 1 cut(s) 362
NdeII GATC 2 cut(s) 43, 291
NlaIII CATG 4 cut(s) 123, 262, 298, 314
NmuCI GTSAC 1 cut(s) 71
NsiI ATGCAT 1 cut(s) 380
NspI RCATGY 1 cut(s) 123
PaeI GCATGC 1 cut(s) 123
PagI TCATGA 1 cut(s) 294
PcsI WCGNNNNNNNCGW 1 cut(s) 530
PfeI GAWTC 1 cut(s) 230
PkrI GCNGC 3 cut(s) 211, 420, 479
Psp1406I AACGTT 1 cut(s) 533
Psp6I CCWGG 1 cut(s) 360
PspGI CCWGG 1 cut(s) 360
PstI CTGCAG 1 cut(s) 214
PvuII CAGCTG 1 cut(s) 152
RseI CAYNNNNRTG 1 cut(s) 242
SaqAI TTAA 2 cut(s) 15, 338
SatI GCNGC 3 cut(s) 210, 419, 478
Sau3AI GATC 2 cut(s) 43, 291
ScrFI CCNGG 1 cut(s) 362
SetI ASST 8 cut(s) 102, 135, 154, 162, 222, 363, 455, 536
SexAI ACCWGGT 1 cut(s) 360
SfaNI GCATC 5 cut(s) 157, 234, 387, 393, 516
SfcI CTRYAG 1 cut(s) 210
SmiMI CAYNNNNRTG 1 cut(s) 242
SmlI CTYRAG 1 cut(s) 337
SmoI CTYRAG 1 cut(s) 337
SphI GCATGC 1 cut(s) 123
Sse9I AATT 5 cut(s) 60, 135, 192, 331, 459
SsiI CCGC 1 cut(s) 76
SspMI CTAG 2 cut(s) 515, 556
StyD4I CCNGG 1 cut(s) 360
TaiI ACGT 1 cut(s) 536
TaqI TCGA 3 cut(s) 52, 104, 381
TasI AATT 5 cut(s) 60, 135, 192, 331, 459
TfiI GAWTC 1 cut(s) 230
Tru1I TTAA 2 cut(s) 15, 338
Tru9I TTAA 2 cut(s) 15, 338
TscAI CASTG 2 cut(s) 294, 413
TseFI GTSAC 1 cut(s) 71
TseI GCWGC 3 cut(s) 209, 418, 477
Tsp45I GTSAC 1 cut(s) 71
TspDTI ATGAA 1 cut(s) 192
TspGWI ACGGA 1 cut(s) 28
TspRI CASTG 2 cut(s) 294, 413
Vha464I CTTAAG 1 cut(s) 337
XapI RAATTY 2 cut(s) 60, 459
XceI RCATGY 1 cut(s) 123
XspI CTAG 2 cut(s) 515, 556
Zsp2I ATGCAT 1 cut(s) 380
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.