Rh7BG047200

Two-component response regulator-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0015629
Physical Location & Seq
Forward (+)
3108402 .. 3109992
1591 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG047200.1

Sequence Viewer

Length: 762 bp
ATGCTTGTGTTCTGTTTATCCTGGCCTTCAGGCCTTGTATATAAACATGTGTGTATTTTGAAAAGCAGGCCTAAATATTTGGTATACCAAACTCTTGGTTGGCTAGTATATATGCTTCATGGGACTTGCATGCATTTCGCATCCTTAATCTTAATCTTGTACGTGTTAGTAAATTTTATTTTCAAAGAGAAGTGCAAGCAGATGACAAGCCAAGTTAACAGCAAGAACAATGGAACTTCCATTGATCGTAGTCGAGTAAAAATTTTGTTGTGTGACCGCAACGCTGAGAGTTGTGAAGAGGTTTCGACACTACTGACAGCATGCTGTTATCAGGTAATTTCGGTTGGCTCAGCTGTGAAGGTTGTGGATGCTCTCAATGAAGAGTGGTCTTCAATTGATATTATACTTGCTGCAGTTGACCTCCCAATAGAATCAAGCATTGAGATGCTGAAGTATATCATGCAAGATAGACATTTCAAATGTATTCCAGTGATCATGCTGTCAACAAACCATGAGTCCTCTTTTCTTCTCAATTTCTTAAGATTGGGGGCAACTGATTACCTGGTCAAGCCATTATGCATCGATGAGATACTGAACTTGTGGATGCACTGCTGGAGGCAGCCTAAGGAACTTGACTGGTTGCCACAGAACAACTTGCAAATTTCAAGTGAAGACAGCAGCAATATCTTCGTCTATAATGACACAGATGAAGAGTTCCTAGAGAATACGATGCAAACGTTGTGTGTATCAAAAAGGAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
ko04712 map04712
Pfam Domains
Protein Families
CCT IQ Response_reg

Protein Analysis

253

Amino Acids

29.17

Weight (kDa)

5.69

Isoelectric Point (pI)

51.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Response_reg PF00072 88 - 199 1.5e-11 Response regulator receiver domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015629)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g14580 FvH4_5g14580
malus_domestica MD14G1204500.v1.1
prunus_persica Prupe.5G197800_v2.0.a1 Prupe.5G197800_v2.0.a1
pyrus_communis pycom14g16900
rosa_chinensis RchiOBHm_Chr7g0181971 RchiOBHm_Chr7g0181991
rosa_laevigata RLG00000005163
rosa_roxburghii Rroxscaffold_3G00271640
rosa_samantha Rh7AG047300 Rh7BG047200 Rh7CG047500 Rh7DG046500
rosa_wichuraiana Rw0G019680 Rw7G003920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 84
AciI CCGC 1 cut(s) 277
AclI AACGTT 1 cut(s) 737
AcsI RAATTY 3 cut(s) 172, 261, 660
AcuI CTGAAG 2 cut(s) 12, 470
AfaI GTAC 1 cut(s) 161
AflII CTTAAG 1 cut(s) 538
AflIII ACRYGT 2 cut(s) 46, 162
AgsI TTSAA 5 cut(s) 61, 184, 393, 478, 666
AjnI CCWGG 2 cut(s) 20, 561
AluBI AGCT 1 cut(s) 353
AluI AGCT 1 cut(s) 353
AoxI GGCC 3 cut(s) 23, 31, 68
ApeKI GCWGC 3 cut(s) 410, 619, 678
ApoI RAATTY 3 cut(s) 172, 261, 660
ArsI GACNNNNNNTTYG 2 cut(s) 500, 532
AxyI CCTNAGG 1 cut(s) 624
BarI GAAGNNNNNNTAC 2 cut(s) 99, 131
BbsI GAAGAC 2 cut(s) 381, 678
BbvI GCAGC 3 cut(s) 397, 631, 690
BcgI CGANNNNNNTGC 4 cut(s) 118, 152, 670, 704
BciT130I CCWGG 2 cut(s) 22, 563
BclI TGATCA 1 cut(s) 492
BfaI CTAG 3 cut(s) 104, 719, 760
BfmI CTRYAG 1 cut(s) 411
BfrI CTTAAG 1 cut(s) 538
BisI GCNGC 3 cut(s) 411, 620, 679
BlpI GCTNAGC 1 cut(s) 349
BlsI GCNGC 3 cut(s) 412, 621, 680
Bme1390I CCNGG 2 cut(s) 22, 563
BmrFI CCNGG 2 cut(s) 22, 563
BmsI GCATC 6 cut(s) 149, 358, 435, 588, 594, 720
BpiI GAAGAC 2 cut(s) 381, 678
BpmI CTGGAG 1 cut(s) 634
Bpu1102I GCTNAGC 1 cut(s) 349
Bsa29I ATCGAT 1 cut(s) 582
BsaAI YACGTR 1 cut(s) 163
Bse1I ACTGG 2 cut(s) 488, 641
Bse21I CCTNAGG 1 cut(s) 624
BseBI CCWGG 2 cut(s) 22, 563
BseCI ATCGAT 1 cut(s) 582
BseGI GGATG 3 cut(s) 140, 373, 609
BseMII CTCAG 2 cut(s) 276, 363
BseNI ACTGG 2 cut(s) 488, 641
BseXI GCAGC 3 cut(s) 397, 631, 690
BshFI GGCC 3 cut(s) 25, 33, 70
BshVI ATCGAT 1 cut(s) 582
BslFI GGGAC 1 cut(s) 136
BsmFI GGGAC 1 cut(s) 136
BsnI GGCC 3 cut(s) 25, 33, 70
Bsp143I GATC 2 cut(s) 244, 492
Bsp1720I GCTNAGC 1 cut(s) 349
BspACI CCGC 1 cut(s) 277
BspANI GGCC 3 cut(s) 25, 33, 70
BspCNI CTCAG 2 cut(s) 277, 362
BspDI ATCGAT 1 cut(s) 582
BspMAI CTGCAG 1 cut(s) 415
BspTI CTTAAG 1 cut(s) 538
BsrI ACTGG 2 cut(s) 488, 641
BssMI GATC 2 cut(s) 244, 492
BssNAI GTATAC 1 cut(s) 85
Bst1107I GTATAC 1 cut(s) 85
Bst2UI CCWGG 2 cut(s) 22, 563
Bst6I CTCTTC 3 cut(s) 291, 375, 705
BstAFI CTTAAG 1 cut(s) 538
BstBAI YACGTR 1 cut(s) 163
BstC8I GCNNGC 4 cut(s) 68, 131, 197, 322
BstDEI CTNAG 3 cut(s) 285, 349, 624
BstF5I GGATG 3 cut(s) 140, 373, 609
BstKTI GATC 2 cut(s) 247, 495
BstMBI GATC 2 cut(s) 244, 492
BstNI CCWGG 2 cut(s) 22, 563
BstNSI RCATGY 3 cut(s) 50, 133, 324
BstSCI CCNGG 2 cut(s) 20, 561
BstSFI CTRYAG 1 cut(s) 411
BstV1I GCAGC 3 cut(s) 397, 631, 690
BstV2I GAAGAC 2 cut(s) 381, 678
BstXI CCANNNNNNTGG 1 cut(s) 95
BstZ17I GTATAC 1 cut(s) 85
Bsu15I ATCGAT 1 cut(s) 582
Bsu36I CCTNAGG 1 cut(s) 624
BsuRI GGCC 3 cut(s) 25, 33, 70
BsuTUI ATCGAT 1 cut(s) 582
BtsCI GGATG 3 cut(s) 140, 373, 609
BtsI GCAGTG 1 cut(s) 607
BtsIMutI CAGTG 2 cut(s) 495, 607
Cac8I GCNNGC 4 cut(s) 68, 131, 197, 322
ClaI ATCGAT 1 cut(s) 582
CsiI ACCWGGT 1 cut(s) 561
Csp6I GTAC 1 cut(s) 160
CviAII CATG 7 cut(s) 47, 119, 130, 321, 460, 496, 512
CviJI RGCY 9 cut(s) 25, 33, 70, 103, 210, 348, 353, 571, 622
CviKI_1 RGCY 9 cut(s) 25, 33, 70, 103, 210, 348, 353, 571, 622
CviQI GTAC 1 cut(s) 160
DdeI CTNAG 3 cut(s) 285, 349, 624
DpnI GATC 2 cut(s) 246, 494
DpnII GATC 2 cut(s) 244, 492
Eam1104I CTCTTC 3 cut(s) 291, 375, 705
EarI CTCTTC 3 cut(s) 291, 375, 705
Eco147I AGGCCT 2 cut(s) 33, 70
Eco57I CTGAAG 2 cut(s) 12, 470
Eco81I CCTNAGG 1 cut(s) 624
EcoRII CCWGG 2 cut(s) 20, 561
EcoT22I ATGCAT 2 cut(s) 135, 581
FaeI CATG 7 cut(s) 50, 122, 133, 324, 463, 499, 515
FaqI GGGAC 1 cut(s) 136
FatI CATG 7 cut(s) 46, 118, 129, 320, 459, 495, 511
FbaI TGATCA 1 cut(s) 492
FblI GTMKAC 1 cut(s) 84
Fnu4HI GCNGC 3 cut(s) 411, 620, 679
FokI GGATG 3 cut(s) 127, 380, 616
Fsp4HI GCNGC 3 cut(s) 411, 620, 679
FspBI CTAG 3 cut(s) 104, 719, 760
GluI GCNGC 3 cut(s) 411, 620, 679
GsuI CTGGAG 1 cut(s) 634
HaeIII GGCC 3 cut(s) 25, 33, 70
Hin1II CATG 7 cut(s) 50, 122, 133, 324, 463, 499, 515
HincII GTYRAC 3 cut(s) 217, 418, 504
HindII GTYRAC 3 cut(s) 217, 418, 504
HinfI GANTC 2 cut(s) 431, 515
HpaI GTTAAC 1 cut(s) 217
Hpy166II GTNNAC 4 cut(s) 85, 217, 418, 504
Hpy8I GTNNAC 4 cut(s) 85, 217, 418, 504
HpyAV CCTTC 2 cut(s) 36, 352
HpyCH4IV ACGT 2 cut(s) 162, 737
HpyCH4V TGCA 9 cut(s) 129, 133, 195, 413, 463, 579, 607, 658, 733
HpyF3I CTNAG 3 cut(s) 285, 349, 624
HpySE526I ACGT 2 cut(s) 162, 737
Hsp92II CATG 7 cut(s) 50, 122, 133, 324, 463, 499, 515
Ksp22I TGATCA 1 cut(s) 492
KspAI GTTAAC 1 cut(s) 217
Kzo9I GATC 2 cut(s) 244, 492
Lsp1109I GCAGC 3 cut(s) 397, 631, 690
LweI GCATC 6 cut(s) 149, 358, 435, 588, 594, 720
MabI ACCWGGT 1 cut(s) 561
MaeI CTAG 3 cut(s) 104, 719, 760
MaeII ACGT 2 cut(s) 162, 737
MaeIII GTNAC 1 cut(s) 272
MalI GATC 2 cut(s) 246, 494
MboI GATC 2 cut(s) 244, 492
MboII GAAGA 7 cut(s) 308, 381, 392, 518, 679, 683, 722
MfeI CAATTG 1 cut(s) 393
MluCI AATT 6 cut(s) 172, 261, 336, 393, 532, 660
MlyI GAGTC 1 cut(s) 524
MnlI CCTC 4 cut(s) 292, 431, 529, 609
Mph1103I ATGCAT 2 cut(s) 135, 581
MseI TTAA 4 cut(s) 146, 152, 216, 539
MslI CAYNNNNRTG 1 cut(s) 443
MspA1I CMGCKG 1 cut(s) 353
MspCI CTTAAG 1 cut(s) 538
MspR9I CCNGG 2 cut(s) 22, 563
MunI CAATTG 1 cut(s) 393
MvaI CCWGG 2 cut(s) 22, 563
NdeII GATC 2 cut(s) 244, 492
NlaIII CATG 7 cut(s) 50, 122, 133, 324, 463, 499, 515
NmuCI GTSAC 1 cut(s) 272
NsiI ATGCAT 2 cut(s) 135, 581
NspI RCATGY 3 cut(s) 50, 133, 324
PaeI GCATGC 2 cut(s) 133, 324
PceI AGGCCT 2 cut(s) 33, 70
PciI ACATGT 1 cut(s) 46
PcsI WCGNNNNNNNCGW 1 cut(s) 734
PfeI GAWTC 1 cut(s) 431
PkrI GCNGC 3 cut(s) 412, 621, 680
PleI GAGTC 1 cut(s) 523
PpsI GAGTC 1 cut(s) 523
Ppu21I YACGTR 1 cut(s) 163
PscI ACATGT 1 cut(s) 46
Psp1406I AACGTT 1 cut(s) 737
Psp6I CCWGG 2 cut(s) 20, 561
PspGI CCWGG 2 cut(s) 20, 561
PstI CTGCAG 1 cut(s) 415
PvuII CAGCTG 1 cut(s) 353
RsaI GTAC 1 cut(s) 161
RsaNI GTAC 1 cut(s) 160
RseI CAYNNNNRTG 1 cut(s) 443
SaqAI TTAA 4 cut(s) 146, 152, 216, 539
SatI GCNGC 3 cut(s) 411, 620, 679
Sau3AI GATC 2 cut(s) 244, 492
SchI GAGTC 1 cut(s) 524
ScrFI CCNGG 2 cut(s) 22, 563
SetI ASST 8 cut(s) 165, 303, 336, 355, 363, 423, 564, 740
SexAI ACCWGGT 1 cut(s) 561
SfaNI GCATC 6 cut(s) 149, 358, 435, 588, 594, 720
SfcI CTRYAG 1 cut(s) 411
SmiMI CAYNNNNRTG 1 cut(s) 443
SmlI CTYRAG 1 cut(s) 538
SmoI CTYRAG 1 cut(s) 538
SphI GCATGC 2 cut(s) 133, 324
Sse9I AATT 6 cut(s) 172, 261, 336, 393, 532, 660
SseBI AGGCCT 2 cut(s) 33, 70
SsiI CCGC 1 cut(s) 277
SspI AATATT 1 cut(s) 77
SspMI CTAG 3 cut(s) 104, 719, 760
StuI AGGCCT 2 cut(s) 33, 70
StyD4I CCNGG 2 cut(s) 20, 561
TaiI ACGT 2 cut(s) 165, 740
TaqI TCGA 3 cut(s) 253, 305, 582
TasI AATT 6 cut(s) 172, 261, 336, 393, 532, 660
TfiI GAWTC 1 cut(s) 431
Tru1I TTAA 4 cut(s) 146, 152, 216, 539
Tru9I TTAA 4 cut(s) 146, 152, 216, 539
TscAI CASTG 2 cut(s) 495, 614
TseFI GTSAC 1 cut(s) 272
TseI GCWGC 3 cut(s) 410, 619, 678
Tsp45I GTSAC 1 cut(s) 272
TspDTI ATGAA 3 cut(s) 107, 393, 723
TspRI CASTG 2 cut(s) 495, 614
Vha464I CTTAAG 1 cut(s) 538
XapI RAATTY 3 cut(s) 172, 261, 660
XceI RCATGY 3 cut(s) 50, 133, 324
XmiI GTMKAC 1 cut(s) 84
XspI CTAG 3 cut(s) 104, 719, 760
Zsp2I ATGCAT 2 cut(s) 135, 581
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.