Rh7CG047500

Two-component response regulator-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0015629
Physical Location & Seq
Forward (+)
3230181 .. 3231660
1480 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG047500.1

Sequence Viewer

Length: 651 bp
ATGCTTCACGAGACTTGCATGCATTTTGCATCCTTAATCTTAATCTTGTACGTGTTAGTAAATTTTATTTTCAAAGAGAAGTGCAAGCAGATGACAAGCCAAGTTAACAGCAAGAACAATGGAACTTCCATTGATCGTAGTCGAGTAAAAATTTTGTTGTGTGACCGCAACGCTGAGAGTTGTGAAGAGGTTTCGACACTACTGACAGCATGCTGTTATCAGGTAATTTCGGTTGGCTCAGCTGTGAAGGTTGTGGATGCTCTCAATGAAGAGTGGTCTTCAATTGATATTATACTAGCTGCAGTTGACCTCCCAATAGAATCAGGCATTGAGATGCTGAAGTATATCATGCAAGATAGACATTTCAAATGTATTCCAGTGATCATGCTGTCAACAAACCATGAGTCCTCTTTTCTTCTCAATTTCTTAAGATTGGGGGCAACTGATTACCTGGTCAAGCCATTATGCATCGATGAGATACTGAACTTGTGGATGCACTGCTTGAGGCAGCCTAAGGAACTTGACTGGTTGCCACAGAACAACTTGCAAATTTCAAGTGAAGACAGCAGCAATATCTTCGTCTATAATGACACAGATGAAGAGTTATTAGAGAATACGATGCAAACGTTGTGTGTATCAAAAAGGAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
ko04712 map04712
Pfam Domains
Protein Families
CCT IQ Response_reg

Protein Analysis

216

Amino Acids

24.72

Weight (kDa)

4.93

Isoelectric Point (pI)

52.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Response_reg PF00072 51 - 162 6.4e-14 Response regulator receiver domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015629)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g14580 FvH4_5g14580
malus_domestica MD14G1204500.v1.1
prunus_persica Prupe.5G197800_v2.0.a1 Prupe.5G197800_v2.0.a1
pyrus_communis pycom14g16900
rosa_chinensis RchiOBHm_Chr7g0181971 RchiOBHm_Chr7g0181991
rosa_laevigata RLG00000005163
rosa_roxburghii Rroxscaffold_3G00271640
rosa_samantha Rh7AG047300 Rh7BG047200 Rh7CG047500 Rh7DG046500
rosa_wichuraiana Rw0G019680 Rw7G003920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 166
AclI AACGTT 1 cut(s) 626
AcsI RAATTY 3 cut(s) 61, 150, 549
AcuI CTGAAG 1 cut(s) 359
AfaI GTAC 1 cut(s) 50
AflII CTTAAG 1 cut(s) 427
AflIII ACRYGT 1 cut(s) 51
AgsI TTSAA 4 cut(s) 73, 282, 367, 555
AjnI CCWGG 1 cut(s) 450
AluBI AGCT 2 cut(s) 242, 299
AluI AGCT 2 cut(s) 242, 299
Alw26I GTCTC 1 cut(s) 5
ApeKI GCWGC 3 cut(s) 299, 508, 567
ApoI RAATTY 3 cut(s) 61, 150, 549
ArsI GACNNNNNNTTYG 2 cut(s) 389, 421
AxyI CCTNAGG 1 cut(s) 513
BauI CACGAG 1 cut(s) 8
BbsI GAAGAC 2 cut(s) 270, 567
BbvI GCAGC 3 cut(s) 286, 520, 579
BcgI CGANNNNNNTGC 2 cut(s) 559, 593
BciT130I CCWGG 1 cut(s) 452
BclI TGATCA 1 cut(s) 381
BcoDI GTCTC 1 cut(s) 5
BfaI CTAG 2 cut(s) 296, 649
BfmI CTRYAG 1 cut(s) 300
BfrI CTTAAG 1 cut(s) 427
BisI GCNGC 3 cut(s) 300, 509, 568
BlpI GCTNAGC 1 cut(s) 238
BlsI GCNGC 3 cut(s) 301, 510, 569
Bme1390I CCNGG 1 cut(s) 452
BmrFI CCNGG 1 cut(s) 452
BmsI GCATC 6 cut(s) 38, 247, 324, 477, 483, 609
BpiI GAAGAC 2 cut(s) 270, 567
Bpu1102I GCTNAGC 1 cut(s) 238
BpuEI CTTGAG 1 cut(s) 523
Bsa29I ATCGAT 1 cut(s) 471
BsaAI YACGTR 1 cut(s) 52
Bse1I ACTGG 2 cut(s) 377, 530
Bse21I CCTNAGG 1 cut(s) 513
BseBI CCWGG 1 cut(s) 452
BseCI ATCGAT 1 cut(s) 471
BseGI GGATG 3 cut(s) 29, 262, 498
BseMII CTCAG 2 cut(s) 165, 252
BseNI ACTGG 2 cut(s) 377, 530
BseXI GCAGC 3 cut(s) 286, 520, 579
BshVI ATCGAT 1 cut(s) 471
BsmAI GTCTC 1 cut(s) 5
Bsp143I GATC 2 cut(s) 133, 381
Bsp1720I GCTNAGC 1 cut(s) 238
BspACI CCGC 1 cut(s) 166
BspCNI CTCAG 2 cut(s) 166, 251
BspDI ATCGAT 1 cut(s) 471
BspMAI CTGCAG 1 cut(s) 304
BspTI CTTAAG 1 cut(s) 427
BsrI ACTGG 2 cut(s) 377, 530
BssMI GATC 2 cut(s) 133, 381
BssSI CACGAG 1 cut(s) 8
Bst2BI CACGAG 1 cut(s) 8
Bst2UI CCWGG 1 cut(s) 452
Bst6I CTCTTC 3 cut(s) 180, 264, 594
BstAFI CTTAAG 1 cut(s) 427
BstBAI YACGTR 1 cut(s) 52
BstC8I GCNNGC 3 cut(s) 20, 86, 211
BstDEI CTNAG 3 cut(s) 174, 238, 513
BstF5I GGATG 3 cut(s) 29, 262, 498
BstKTI GATC 2 cut(s) 136, 384
BstMAI GTCTC 1 cut(s) 5
BstMBI GATC 2 cut(s) 133, 381
BstNI CCWGG 1 cut(s) 452
BstNSI RCATGY 2 cut(s) 22, 213
BstSCI CCNGG 1 cut(s) 450
BstSFI CTRYAG 1 cut(s) 300
BstV1I GCAGC 3 cut(s) 286, 520, 579
BstV2I GAAGAC 2 cut(s) 270, 567
Bsu15I ATCGAT 1 cut(s) 471
Bsu36I CCTNAGG 1 cut(s) 513
BsuTUI ATCGAT 1 cut(s) 471
BtsCI GGATG 3 cut(s) 29, 262, 498
BtsI GCAGTG 1 cut(s) 496
BtsIMutI CAGTG 2 cut(s) 384, 496
Cac8I GCNNGC 3 cut(s) 20, 86, 211
ClaI ATCGAT 1 cut(s) 471
CsiI ACCWGGT 1 cut(s) 450
Csp6I GTAC 1 cut(s) 49
CviAII CATG 5 cut(s) 19, 210, 349, 385, 401
CviJI RGCY 6 cut(s) 99, 237, 242, 299, 460, 511
CviKI_1 RGCY 6 cut(s) 99, 237, 242, 299, 460, 511
CviQI GTAC 1 cut(s) 49
DdeI CTNAG 3 cut(s) 174, 238, 513
DpnI GATC 2 cut(s) 135, 383
DpnII GATC 2 cut(s) 133, 381
Eam1104I CTCTTC 3 cut(s) 180, 264, 594
EarI CTCTTC 3 cut(s) 180, 264, 594
Eco57I CTGAAG 1 cut(s) 359
Eco81I CCTNAGG 1 cut(s) 513
EcoRII CCWGG 1 cut(s) 450
EcoT22I ATGCAT 2 cut(s) 24, 470
FaeI CATG 5 cut(s) 22, 213, 352, 388, 404
FaiI YATR 9 cut(s) 20, 211, 293, 345, 350, 386, 402, 466, 585
FatI CATG 5 cut(s) 18, 209, 348, 384, 400
FbaI TGATCA 1 cut(s) 381
Fnu4HI GCNGC 3 cut(s) 300, 509, 568
FokI GGATG 3 cut(s) 16, 269, 505
Fsp4HI GCNGC 3 cut(s) 300, 509, 568
FspBI CTAG 2 cut(s) 296, 649
GluI GCNGC 3 cut(s) 300, 509, 568
Hin1II CATG 5 cut(s) 22, 213, 352, 388, 404
HincII GTYRAC 3 cut(s) 106, 307, 393
HindII GTYRAC 3 cut(s) 106, 307, 393
HinfI GANTC 2 cut(s) 320, 404
HpaI GTTAAC 1 cut(s) 106
Hpy166II GTNNAC 3 cut(s) 106, 307, 393
Hpy188III TCNNGA 1 cut(s) 8
Hpy8I GTNNAC 3 cut(s) 106, 307, 393
HpyAV CCTTC 1 cut(s) 241
HpyCH4IV ACGT 2 cut(s) 51, 626
HpyF3I CTNAG 3 cut(s) 174, 238, 513
HpySE526I ACGT 2 cut(s) 51, 626
Hsp92II CATG 5 cut(s) 22, 213, 352, 388, 404
Ksp22I TGATCA 1 cut(s) 381
KspAI GTTAAC 1 cut(s) 106
Kzo9I GATC 2 cut(s) 133, 381
LpnPI CCDG 6 cut(s) 206, 309, 390, 437, 464, 511
Lsp1109I GCAGC 3 cut(s) 286, 520, 579
LweI GCATC 6 cut(s) 38, 247, 324, 477, 483, 609
MabI ACCWGGT 1 cut(s) 450
MaeI CTAG 2 cut(s) 296, 649
MaeII ACGT 2 cut(s) 51, 626
MaeIII GTNAC 1 cut(s) 161
MalI GATC 2 cut(s) 135, 383
MboI GATC 2 cut(s) 133, 381
MboII GAAGA 7 cut(s) 197, 270, 281, 407, 568, 572, 611
MfeI CAATTG 1 cut(s) 282
MluCI AATT 6 cut(s) 61, 150, 225, 282, 421, 549
MlyI GAGTC 1 cut(s) 413
MnlI CCTC 4 cut(s) 181, 320, 418, 498
Mph1103I ATGCAT 2 cut(s) 24, 470
MseI TTAA 4 cut(s) 35, 41, 105, 428
MslI CAYNNNNRTG 1 cut(s) 332
MspA1I CMGCKG 1 cut(s) 242
MspCI CTTAAG 1 cut(s) 427
MspR9I CCNGG 1 cut(s) 452
MunI CAATTG 1 cut(s) 282
MvaI CCWGG 1 cut(s) 452
NdeII GATC 2 cut(s) 133, 381
NlaIII CATG 5 cut(s) 22, 213, 352, 388, 404
NmuCI GTSAC 1 cut(s) 161
NsiI ATGCAT 2 cut(s) 24, 470
NspI RCATGY 2 cut(s) 22, 213
PaeI GCATGC 2 cut(s) 22, 213
PcsI WCGNNNNNNNCGW 1 cut(s) 623
PfeI GAWTC 1 cut(s) 320
PkrI GCNGC 3 cut(s) 301, 510, 569
PleI GAGTC 1 cut(s) 412
PpsI GAGTC 1 cut(s) 412
Ppu21I YACGTR 1 cut(s) 52
Psp1406I AACGTT 1 cut(s) 626
Psp6I CCWGG 1 cut(s) 450
PspGI CCWGG 1 cut(s) 450
PstI CTGCAG 1 cut(s) 304
PvuII CAGCTG 1 cut(s) 242
RsaI GTAC 1 cut(s) 50
RsaNI GTAC 1 cut(s) 49
RseI CAYNNNNRTG 1 cut(s) 332
SaqAI TTAA 4 cut(s) 35, 41, 105, 428
SatI GCNGC 3 cut(s) 300, 509, 568
Sau3AI GATC 2 cut(s) 133, 381
SchI GAGTC 1 cut(s) 413
ScrFI CCNGG 1 cut(s) 452
SetI ASST 9 cut(s) 54, 192, 225, 244, 252, 301, 312, 453, 629
SexAI ACCWGGT 1 cut(s) 450
SfaNI GCATC 6 cut(s) 38, 247, 324, 477, 483, 609
SfcI CTRYAG 1 cut(s) 300
SmiMI CAYNNNNRTG 1 cut(s) 332
SmlI CTYRAG 2 cut(s) 427, 502
SmoI CTYRAG 2 cut(s) 427, 502
SphI GCATGC 2 cut(s) 22, 213
Sse9I AATT 6 cut(s) 61, 150, 225, 282, 421, 549
SsiI CCGC 1 cut(s) 166
SspMI CTAG 2 cut(s) 296, 649
StyD4I CCNGG 1 cut(s) 450
TaiI ACGT 2 cut(s) 54, 629
TaqI TCGA 3 cut(s) 142, 194, 471
TasI AATT 6 cut(s) 61, 150, 225, 282, 421, 549
TfiI GAWTC 1 cut(s) 320
Tru1I TTAA 4 cut(s) 35, 41, 105, 428
Tru9I TTAA 4 cut(s) 35, 41, 105, 428
TscAI CASTG 2 cut(s) 384, 503
TseFI GTSAC 1 cut(s) 161
TseI GCWGC 3 cut(s) 299, 508, 567
Tsp45I GTSAC 1 cut(s) 161
TspDTI ATGAA 2 cut(s) 282, 612
TspRI CASTG 2 cut(s) 384, 503
Vha464I CTTAAG 1 cut(s) 427
XapI RAATTY 3 cut(s) 61, 150, 549
XceI RCATGY 2 cut(s) 22, 213
XspI CTAG 2 cut(s) 296, 649
Zsp2I ATGCAT 2 cut(s) 24, 470
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.