Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0015629

Physical Location & Seq

Genomic Coordinates Forward (+)

15972365 .. 15974022

Gene Structure 1658 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G197800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 621 bp

ATGGAGAAAGGTAAGCAAATAGACATTGGCAACGGCAGCAGGCAACATGGTGGCAGCCGAGCTAAGAGCAAGAACATGTCCATAGATCGTAGCAGAGTAAGAGTTTTGTTGTGTGACCGCGATGCCGAGAGTTGTGAGGAGGTTTGCACACTACTGACAACATGCTGTTATCAGGTAATATCAGTAAGTTCTGCTGTGGAGGTGTTGGATGCTCTGAATGCTGAGTGGTCATTCATTGATATCATACTTGCTGCAGTTGACCTTCCCATAGATGCAAGCATGAGAATGTTGAAATATATAATGCAGGATCTGCATTTCAAGCATATCCCAGTGATAATGCTGTCCACGCAGAACGAAAGCCGTTTTCTTTACAATTTCTTAAAATTTGGTGCTACTGATTATCTGGTCAAGCCACTATGCATTGATGAGATATTAAACATGTGGATCCACTCTTGGAGGCAGAGGAAGCCTCCAAAGGGGCTCGAGCCGCCACAGAAGAGCATTAGTCTCGTGGTTTCAGCTGAAGCAACTACGAACAACATCTTGGTCTTAGATGACACTACCAGAGATGAAGAGTTTCCAGAGGATCCAGAGCCAACTTTGTGTGTATCAAAAAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko04712 map04712

Pfam Domains

Protein Families

CCT IQ Response_reg

Protein Analysis

207

Amino Acids

23.33

Weight (kDa)

5.44

Isoelectric Point (pI)

38.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015629)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g14580 FvH4_5g14580
malus_domestica	MD14G1204500.v1.1
prunus_persica	Prupe.5G197800_v2.0.a1 Prupe.5G197800_v2.0.a1
pyrus_communis	pycom14g16900
rosa_chinensis	RchiOBHm_Chr7g0181971 RchiOBHm_Chr7g0181991
rosa_laevigata	RLG00000005163
rosa_roxburghii	Rroxscaffold_3G00271640
rosa_samantha	Rh7AG047300 Rh7BG047200 Rh7CG047500 Rh7DG046500
rosa_wichuraiana	Rw0G019680 Rw7G003920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	120
AciI	CCGC	2 cut(s)	118, 488
AclWI	GGATC	5 cut(s)	315, 439, 452, 581, 594
AcsI	RAATTY	1 cut(s)	383
AcuI	CTGAAG	1 cut(s)	543
AfiI	CCNNNNNNNGG	1 cut(s)	476
AflIII	ACRYGT	2 cut(s)	75, 438
AgsI	TTSAA	2 cut(s)	292, 319
AjuI	GAANNNNNNNTTGG	2 cut(s)	527, 559
AluBI	AGCT	2 cut(s)	62, 521
AluI	AGCT	2 cut(s)	62, 521
Alw26I	GTCTC	1 cut(s)	512
AlwI	GGATC	5 cut(s)	315, 439, 452, 581, 594
AlwNI	CAGNNNCTG	1 cut(s)	310
Ama87I	CYCGRG	1 cut(s)	482
ApeKI	GCWGC	3 cut(s)	36, 54, 251
ApoI	RAATTY	1 cut(s)	383
Asp700I	GAANNNNTTC	1 cut(s)	576
AvaI	CYCGRG	1 cut(s)	482
BamHI	GGATCC	2 cut(s)	444, 586
BanII	GRGCYC	1 cut(s)	483
BauI	CACGAG	1 cut(s)	509
BbvI	GCAGC	3 cut(s)	48, 66, 238
BceAI	ACGGC	2 cut(s)	49, 345
BcgI	CGANNNNNNTGC	2 cut(s)	490, 524
BcoDI	GTCTC	1 cut(s)	512
BfmI	CTRYAG	1 cut(s)	252
BisI	GCNGC	4 cut(s)	37, 55, 252, 488
BlsI	GCNGC	4 cut(s)	38, 56, 253, 489
BmeT110I	CYCGRG	1 cut(s)	482
BmiI	GGNNCC	2 cut(s)	446, 588
BmrI	ACTGGG	1 cut(s)	323
BmsI	GCATC	3 cut(s)	112, 199, 262
BmuI	ACTGGG	1 cut(s)	323
BplI	GAGNNNNNCTC	2 cut(s)	454, 486
Bsc4I	CCNNNNNNNGG	1 cut(s)	476
Bse1I	ACTGG	1 cut(s)	329
BseGI	GGATG	1 cut(s)	214
BseLI	CCNNNNNNNGG	1 cut(s)	476
BseMII	CTCAG	1 cut(s)	213
BseNI	ACTGG	1 cut(s)	329
BseRI	GAGGAG	1 cut(s)	152
BseXI	GCAGC	3 cut(s)	48, 66, 238
Bsh1236I	CGCG	1 cut(s)	120
BsiHKCI	CYCGRG	1 cut(s)	482
BslI	CCNNNNNNNGG	1 cut(s)	476
BsmAI	GTCTC	1 cut(s)	512
BsmI	GAATGC	1 cut(s)	223
BsoBI	CYCGRG	1 cut(s)	482
Bsp1286I	GDGCHC	1 cut(s)	483
Bsp143I	GATC	4 cut(s)	85, 307, 444, 586
BspACI	CCGC	2 cut(s)	118, 488
BspCNI	CTCAG	1 cut(s)	214
BspFNI	CGCG	1 cut(s)	120
BspLI	GGNNCC	2 cut(s)	446, 588
BspMAI	CTGCAG	1 cut(s)	256
BspPI	GGATC	5 cut(s)	315, 439, 452, 581, 594
BspQI	GCTCTTC	1 cut(s)	491
BsrI	ACTGG	1 cut(s)	329
BssMI	GATC	4 cut(s)	85, 307, 444, 586
BssSI	CACGAG	1 cut(s)	509
Bst2BI	CACGAG	1 cut(s)	509
Bst6I	CTCTTC	2 cut(s)	491, 567
BstAPI	GCANNNNNTGC	1 cut(s)	310
BstC8I	GCNNGC	2 cut(s)	41, 277
BstDEI	CTNAG	3 cut(s)	63, 222, 550
BstF5I	GGATG	1 cut(s)	214
BstFNI	CGCG	1 cut(s)	120
BstKTI	GATC	4 cut(s)	88, 310, 447, 589
BstMAI	GTCTC	1 cut(s)	512
BstMBI	GATC	4 cut(s)	85, 307, 444, 586
BstMWI	GCNNNNNNNGC	7 cut(s)	36, 218, 310, 319, 346, 466, 487
BstNSI	RCATGY	3 cut(s)	79, 165, 442
BstSFI	CTRYAG	1 cut(s)	252
BstUI	CGCG	1 cut(s)	120
BstV1I	GCAGC	3 cut(s)	48, 66, 238
BstX2I	RGATCY	3 cut(s)	307, 444, 586
BstYI	RGATCY	3 cut(s)	307, 444, 586
BtgZI	GCGATG	1 cut(s)	135
BtsCI	GGATG	1 cut(s)	214
BtsIMutI	CAGTG	1 cut(s)	336
Cac8I	GCNNGC	2 cut(s)	41, 277
CaiI	CAGNNNCTG	1 cut(s)	310
CviAII	CATG	5 cut(s)	47, 76, 162, 280, 439
CviJI	RGCY	9 cut(s)	57, 62, 360, 412, 469, 481, 487, 521, 595
CviKI_1	RGCY	9 cut(s)	57, 62, 360, 412, 469, 481, 487, 521, 595
DdeI	CTNAG	3 cut(s)	63, 222, 550
DpnI	GATC	4 cut(s)	87, 309, 446, 588
DpnII	GATC	4 cut(s)	85, 307, 444, 586
Eam1104I	CTCTTC	2 cut(s)	491, 567
EarI	CTCTTC	2 cut(s)	491, 567
Eco24I	GRGCYC	1 cut(s)	483
Eco32I	GATATC	1 cut(s)	241
Eco57I	CTGAAG	1 cut(s)	543
Eco88I	CYCGRG	1 cut(s)	482
EcoRV	GATATC	1 cut(s)	241
EcoT22I	ATGCAT	1 cut(s)	422
EcoT38I	GRGCYC	1 cut(s)	483
FaeI	CATG	5 cut(s)	50, 79, 165, 283, 442
FatI	CATG	5 cut(s)	46, 75, 161, 279, 438
Fnu4HI	GCNGC	4 cut(s)	37, 55, 252, 488
FokI	GGATG	1 cut(s)	221
FriOI	GRGCYC	1 cut(s)	483
Fsp4HI	GCNGC	4 cut(s)	37, 55, 252, 488
GluI	GCNGC	4 cut(s)	37, 55, 252, 488
Hin1II	CATG	5 cut(s)	50, 79, 165, 283, 442
HincII	GTYRAC	1 cut(s)	259
HindII	GTYRAC	1 cut(s)	259
Hpy166II	GTNNAC	2 cut(s)	259, 345
Hpy188I	TCNGA	1 cut(s)	216
Hpy188III	TCNNGA	2 cut(s)	581, 590
Hpy8I	GTNNAC	2 cut(s)	259, 345
HpyAV	CCTTC	1 cut(s)	272
HpyCH4V	TGCA	6 cut(s)	147, 254, 275, 304, 313, 420
HpyF10VI	GCNNNNNNNGC	7 cut(s)	36, 218, 310, 319, 346, 466, 487
HpyF3I	CTNAG	3 cut(s)	63, 222, 550
Hsp92II	CATG	5 cut(s)	50, 79, 165, 283, 442
Kzo9I	GATC	4 cut(s)	85, 307, 444, 586
LguI	GCTCTTC	1 cut(s)	491
LpnPI	CCDG	8 cut(s)	25, 158, 290, 342, 389, 577, 594, 603
Lsp1109I	GCAGC	3 cut(s)	48, 66, 238
LweI	GCATC	3 cut(s)	112, 199, 262
MaeIII	GTNAC	1 cut(s)	113
MalI	GATC	4 cut(s)	87, 309, 446, 588
MboI	GATC	4 cut(s)	85, 307, 444, 586
MboII	GAAGA	2 cut(s)	508, 584
MflI	RGATCY	3 cut(s)	307, 444, 586
MhlI	GDGCHC	1 cut(s)	483
MluCI	AATT	2 cut(s)	373, 383
MmeI	TCCRAC	1 cut(s)	186
MnlI	CCTC	7 cut(s)	130, 133, 193, 450, 456, 480, 577
Mph1103I	ATGCAT	1 cut(s)	422
MroXI	GAANNNNTTC	1 cut(s)	576
MseI	TTAA	2 cut(s)	380, 434
MslI	CAYNNNNRTG	1 cut(s)	284
MspA1I	CMGCKG	1 cut(s)	521
Mva1269I	GAATGC	1 cut(s)	223
MvnI	CGCG	1 cut(s)	120
MwoI	GCNNNNNNNGC	7 cut(s)	36, 218, 310, 319, 346, 466, 487
NdeII	GATC	4 cut(s)	85, 307, 444, 586
NlaIII	CATG	5 cut(s)	50, 79, 165, 283, 442
NlaIV	GGNNCC	2 cut(s)	446, 588
NmeAIII	GCCGAG	2 cut(s)	83, 151
NmuCI	GTSAC	1 cut(s)	113
NsiI	ATGCAT	1 cut(s)	422
NspI	RCATGY	3 cut(s)	79, 165, 442
PaeR7I	CTCGAG	1 cut(s)	482
PciI	ACATGT	2 cut(s)	75, 438
PciSI	GCTCTTC	1 cut(s)	491
PctI	GAATGC	1 cut(s)	223
PdmI	GAANNNNTTC	1 cut(s)	576
PkrI	GCNGC	4 cut(s)	38, 56, 253, 489
PscI	ACATGT	2 cut(s)	75, 438
PspN4I	GGNNCC	2 cut(s)	446, 588
PspXI	VCTCGAGB	1 cut(s)	482
PstI	CTGCAG	1 cut(s)	256
PstNI	CAGNNNCTG	1 cut(s)	310
PsuI	RGATCY	3 cut(s)	307, 444, 586
PvuII	CAGCTG	1 cut(s)	521
RseI	CAYNNNNRTG	1 cut(s)	284
SapI	GCTCTTC	1 cut(s)	491
SaqAI	TTAA	2 cut(s)	380, 434
SatI	GCNGC	4 cut(s)	37, 55, 252, 488
Sau3AI	GATC	4 cut(s)	85, 307, 444, 586
SduI	GDGCHC	1 cut(s)	483
SetI	ASST	7 cut(s)	13, 64, 144, 177, 204, 264, 523
SfaNI	GCATC	3 cut(s)	112, 199, 262
SfcI	CTRYAG	1 cut(s)	252
Sfr274I	CTCGAG	1 cut(s)	482
SlaI	CTCGAG	1 cut(s)	482
SmiMI	CAYNNNNRTG	1 cut(s)	284
SmlI	CTYRAG	1 cut(s)	482
SmoI	CTYRAG	1 cut(s)	482
Sse9I	AATT	2 cut(s)	373, 383
SsiI	CCGC	2 cut(s)	118, 488
TaqI	TCGA	1 cut(s)	483
TasI	AATT	2 cut(s)	373, 383
TauI	GCSGC	1 cut(s)	490
Tru1I	TTAA	2 cut(s)	380, 434
Tru9I	TTAA	2 cut(s)	380, 434
TscAI	CASTG	1 cut(s)	336
TseFI	GTSAC	1 cut(s)	113
TseI	GCWGC	3 cut(s)	36, 54, 251
Tsp45I	GTSAC	1 cut(s)	113
TspDTI	ATGAA	2 cut(s)	223, 585
TspRI	CASTG	1 cut(s)	336
XapI	RAATTY	1 cut(s)	383
XceI	RCATGY	3 cut(s)	79, 165, 442
XhoI	CTCGAG	1 cut(s)	482
XmnI	GAANNNNTTC	1 cut(s)	576
Zsp2I	ATGCAT	1 cut(s)	422

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.