Rroxscaffold_3G00271640

Two-component response regulator-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0015629
Physical Location & Seq
Reverse (-)
63994431 .. 63995881
1451 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00271640.1

Sequence Viewer

Length: 633 bp
ATGCATTTTGCATCCTTAATCTTAATCTTGTACGTGTTAGTAAATTTTATTTTTAAAGAGAAGTGCAAGCAGATGACAAGCCAAGTTAACAGCAAGAACAATGGAACTTCCATTGATCGTAGTCAAGTAAAAATTTTGTTGTGTGACCGCAACGCTGAGAGTTGTGAAGAGGTTTCGACACTACTGACAGCATGCTGTTATCAGGTAATTTCGGTTGGCTCAGCTGTGAAGGTTGTGGATGCTCTCAATGAAGAGTGGTCTTCGATTGATATTATACTTGCTGCAGTTGACCTCCCAATAGAATCAAGCATTGAGATGCTGAAGTATATCATGCAAGATAGACATTTCAAATGTATTCCAGTGATCATGCTGTCAACAAACCATGAGTCTTCTTTTCTTCTCAATTTCTTGAGATTGGGGGCAACTGATTACCTGGTCAAGCCATTATGCATCGATGAGATACTGAACTTGTGGATGCACTGCTGGAGGCAGCCTAAGGAACTTGACTGGTTGCCACAGAACAACTTGCAAATTTCAAGTGAAGACAGCAGCAATATCTTCGTCTATAATGACACAGATGAAGAGTTCCTACAGAATACGATGCAAACGTTGTGTGTATCAAAAAGGAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
ko04712 map04712
Pfam Domains
Protein Families
CCT IQ Response_reg

Protein Analysis

210

Amino Acids

24.11

Weight (kDa)

4.89

Isoelectric Point (pI)

53.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Response_reg PF00072 45 - 156 9.1e-12 Response regulator receiver domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015629)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g14580 FvH4_5g14580
malus_domestica MD14G1204500.v1.1
prunus_persica Prupe.5G197800_v2.0.a1 Prupe.5G197800_v2.0.a1
pyrus_communis pycom14g16900
rosa_chinensis RchiOBHm_Chr7g0181971 RchiOBHm_Chr7g0181991
rosa_laevigata RLG00000005163
rosa_roxburghii Rroxscaffold_3G00271640
rosa_samantha Rh7AG047300 Rh7BG047200 Rh7CG047500 Rh7DG046500
rosa_wichuraiana Rw0G019680 Rw7G003920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 148
AclI AACGTT 1 cut(s) 608
AcsI RAATTY 3 cut(s) 43, 132, 531
AcuI CTGAAG 1 cut(s) 341
AfaI GTAC 1 cut(s) 32
AflIII ACRYGT 1 cut(s) 33
AgsI TTSAA 2 cut(s) 349, 537
AjnI CCWGG 1 cut(s) 432
AluBI AGCT 1 cut(s) 224
AluI AGCT 1 cut(s) 224
ApeKI GCWGC 3 cut(s) 281, 490, 549
ApoI RAATTY 3 cut(s) 43, 132, 531
ArsI GACNNNNNNTTYG 2 cut(s) 371, 403
AxyI CCTNAGG 1 cut(s) 495
BarI GAAGNNNNNNTAC 2 cut(s) 573, 605
BbsI GAAGAC 3 cut(s) 252, 381, 549
BbvI GCAGC 3 cut(s) 268, 502, 561
BcgI CGANNNNNNTGC 2 cut(s) 541, 575
BciT130I CCWGG 1 cut(s) 434
BclI TGATCA 1 cut(s) 363
BfaI CTAG 1 cut(s) 631
BfmI CTRYAG 2 cut(s) 282, 590
BisI GCNGC 3 cut(s) 282, 491, 550
BlpI GCTNAGC 1 cut(s) 220
BlsI GCNGC 3 cut(s) 283, 492, 551
Bme1390I CCNGG 1 cut(s) 434
BmrFI CCNGG 1 cut(s) 434
BmsI GCATC 6 cut(s) 20, 229, 306, 459, 465, 591
BpiI GAAGAC 3 cut(s) 252, 381, 549
BpmI CTGGAG 1 cut(s) 505
Bpu1102I GCTNAGC 1 cut(s) 220
BpuEI CTTGAG 1 cut(s) 430
Bsa29I ATCGAT 1 cut(s) 453
BsaAI YACGTR 1 cut(s) 34
Bse1I ACTGG 2 cut(s) 359, 512
Bse21I CCTNAGG 1 cut(s) 495
BseBI CCWGG 1 cut(s) 434
BseCI ATCGAT 1 cut(s) 453
BseGI GGATG 3 cut(s) 11, 244, 480
BseMII CTCAG 2 cut(s) 147, 234
BseNI ACTGG 2 cut(s) 359, 512
BseXI GCAGC 3 cut(s) 268, 502, 561
BshVI ATCGAT 1 cut(s) 453
Bsp143I GATC 2 cut(s) 115, 363
Bsp1720I GCTNAGC 1 cut(s) 220
BspACI CCGC 1 cut(s) 148
BspCNI CTCAG 2 cut(s) 148, 233
BspDI ATCGAT 1 cut(s) 453
BspMAI CTGCAG 1 cut(s) 286
BsrI ACTGG 2 cut(s) 359, 512
BssMI GATC 2 cut(s) 115, 363
Bst2UI CCWGG 1 cut(s) 434
Bst6I CTCTTC 3 cut(s) 162, 246, 576
BstBAI YACGTR 1 cut(s) 34
BstC8I GCNNGC 2 cut(s) 68, 193
BstDEI CTNAG 3 cut(s) 156, 220, 495
BstF5I GGATG 3 cut(s) 11, 244, 480
BstKTI GATC 2 cut(s) 118, 366
BstMBI GATC 2 cut(s) 115, 363
BstNI CCWGG 1 cut(s) 434
BstNSI RCATGY 1 cut(s) 195
BstSCI CCNGG 1 cut(s) 432
BstSFI CTRYAG 2 cut(s) 282, 590
BstV1I GCAGC 3 cut(s) 268, 502, 561
BstV2I GAAGAC 3 cut(s) 252, 381, 549
Bsu15I ATCGAT 1 cut(s) 453
Bsu36I CCTNAGG 1 cut(s) 495
BsuTUI ATCGAT 1 cut(s) 453
BtsCI GGATG 3 cut(s) 11, 244, 480
BtsI GCAGTG 1 cut(s) 478
BtsIMutI CAGTG 2 cut(s) 366, 478
Cac8I GCNNGC 2 cut(s) 68, 193
ClaI ATCGAT 1 cut(s) 453
CsiI ACCWGGT 1 cut(s) 432
Csp6I GTAC 1 cut(s) 31
CviAII CATG 4 cut(s) 192, 331, 367, 383
CviJI RGCY 5 cut(s) 81, 219, 224, 442, 493
CviKI_1 RGCY 5 cut(s) 81, 219, 224, 442, 493
CviQI GTAC 1 cut(s) 31
DdeI CTNAG 3 cut(s) 156, 220, 495
DpnI GATC 2 cut(s) 117, 365
DpnII GATC 2 cut(s) 115, 363
DraI TTTAAA 1 cut(s) 55
Eam1104I CTCTTC 3 cut(s) 162, 246, 576
EarI CTCTTC 3 cut(s) 162, 246, 576
Eco57I CTGAAG 1 cut(s) 341
Eco81I CCTNAGG 1 cut(s) 495
EcoRII CCWGG 1 cut(s) 432
EcoT22I ATGCAT 2 cut(s) 6, 452
FaeI CATG 4 cut(s) 195, 334, 370, 386
FaiI YATR 8 cut(s) 193, 275, 327, 332, 368, 384, 448, 567
FatI CATG 4 cut(s) 191, 330, 366, 382
FbaI TGATCA 1 cut(s) 363
Fnu4HI GCNGC 3 cut(s) 282, 491, 550
FokI GGATG 2 cut(s) 251, 487
Fsp4HI GCNGC 3 cut(s) 282, 491, 550
FspBI CTAG 1 cut(s) 631
GluI GCNGC 3 cut(s) 282, 491, 550
GsuI CTGGAG 1 cut(s) 505
Hin1II CATG 4 cut(s) 195, 334, 370, 386
HincII GTYRAC 3 cut(s) 88, 289, 375
HindII GTYRAC 3 cut(s) 88, 289, 375
HinfI GANTC 2 cut(s) 302, 386
HpaI GTTAAC 1 cut(s) 88
Hpy166II GTNNAC 3 cut(s) 88, 289, 375
Hpy188III TCNNGA 1 cut(s) 409
Hpy8I GTNNAC 3 cut(s) 88, 289, 375
HpyAV CCTTC 1 cut(s) 223
HpyCH4IV ACGT 2 cut(s) 33, 608
HpyCH4V TGCA 9 cut(s) 4, 11, 66, 284, 334, 450, 478, 529, 604
HpyF3I CTNAG 3 cut(s) 156, 220, 495
HpySE526I ACGT 2 cut(s) 33, 608
Hsp92II CATG 4 cut(s) 195, 334, 370, 386
Ksp22I TGATCA 1 cut(s) 363
KspAI GTTAAC 1 cut(s) 88
Kzo9I GATC 2 cut(s) 115, 363
LpnPI CCDG 6 cut(s) 188, 372, 419, 446, 469, 493
Lsp1109I GCAGC 3 cut(s) 268, 502, 561
LweI GCATC 6 cut(s) 20, 229, 306, 459, 465, 591
MabI ACCWGGT 1 cut(s) 432
MaeI CTAG 1 cut(s) 631
MaeII ACGT 2 cut(s) 33, 608
MaeIII GTNAC 1 cut(s) 143
MalI GATC 2 cut(s) 117, 365
MboI GATC 2 cut(s) 115, 363
MboII GAAGA 8 cut(s) 179, 252, 263, 381, 389, 550, 554, 593
MluCI AATT 5 cut(s) 43, 132, 207, 403, 531
MlyI GAGTC 1 cut(s) 395
MnlI CCTC 3 cut(s) 163, 302, 480
Mph1103I ATGCAT 2 cut(s) 6, 452
MseI TTAA 4 cut(s) 17, 23, 54, 87
MslI CAYNNNNRTG 1 cut(s) 314
MspA1I CMGCKG 1 cut(s) 224
MspR9I CCNGG 1 cut(s) 434
MvaI CCWGG 1 cut(s) 434
NdeII GATC 2 cut(s) 115, 363
NlaIII CATG 4 cut(s) 195, 334, 370, 386
NmuCI GTSAC 1 cut(s) 143
NsiI ATGCAT 2 cut(s) 6, 452
NspI RCATGY 1 cut(s) 195
PaeI GCATGC 1 cut(s) 195
PcsI WCGNNNNNNNCGW 1 cut(s) 605
PfeI GAWTC 1 cut(s) 302
PkrI GCNGC 3 cut(s) 283, 492, 551
PleI GAGTC 1 cut(s) 394
PpsI GAGTC 1 cut(s) 394
Ppu21I YACGTR 1 cut(s) 34
Psp1406I AACGTT 1 cut(s) 608
Psp6I CCWGG 1 cut(s) 432
PspGI CCWGG 1 cut(s) 432
PstI CTGCAG 1 cut(s) 286
PvuII CAGCTG 1 cut(s) 224
RsaI GTAC 1 cut(s) 32
RsaNI GTAC 1 cut(s) 31
RseI CAYNNNNRTG 1 cut(s) 314
SaqAI TTAA 4 cut(s) 17, 23, 54, 87
SatI GCNGC 3 cut(s) 282, 491, 550
Sau3AI GATC 2 cut(s) 115, 363
SchI GAGTC 1 cut(s) 395
ScrFI CCNGG 1 cut(s) 434
SetI ASST 8 cut(s) 36, 174, 207, 226, 234, 294, 435, 611
SexAI ACCWGGT 1 cut(s) 432
SfaNI GCATC 6 cut(s) 20, 229, 306, 459, 465, 591
SfcI CTRYAG 2 cut(s) 282, 590
SmiMI CAYNNNNRTG 1 cut(s) 314
SmlI CTYRAG 1 cut(s) 409
SmoI CTYRAG 1 cut(s) 409
SphI GCATGC 1 cut(s) 195
Sse9I AATT 5 cut(s) 43, 132, 207, 403, 531
SsiI CCGC 1 cut(s) 148
SspMI CTAG 1 cut(s) 631
StyD4I CCNGG 1 cut(s) 432
TaiI ACGT 2 cut(s) 36, 611
TaqI TCGA 3 cut(s) 176, 263, 453
TasI AATT 5 cut(s) 43, 132, 207, 403, 531
TfiI GAWTC 1 cut(s) 302
Tru1I TTAA 4 cut(s) 17, 23, 54, 87
Tru9I TTAA 4 cut(s) 17, 23, 54, 87
TscAI CASTG 2 cut(s) 366, 485
TseFI GTSAC 1 cut(s) 143
TseI GCWGC 3 cut(s) 281, 490, 549
Tsp45I GTSAC 1 cut(s) 143
TspDTI ATGAA 2 cut(s) 264, 594
TspRI CASTG 2 cut(s) 366, 485
XapI RAATTY 3 cut(s) 43, 132, 531
XceI RCATGY 1 cut(s) 195
XspI CTAG 1 cut(s) 631
Zsp2I ATGCAT 2 cut(s) 6, 452
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.