Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0015629

Physical Location & Seq

Genomic Coordinates Forward (+)

19045558 .. 19046067

Gene Structure 510 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom14g16900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 378 bp

ATGGAGAAAGATAAGCAGATCGATATTGGTAACAGCAGCAGGCAATATGGTGGCAGTAGAGCTAAGAGCAAGAACATGTCCGTGGATGGCAGTAGGGTAAGAATTTTGCTGTGTGATCGCGACGCTGGGAGTTGCGAGGAGGTTTGCACATTGCTGACAACATGCAGTTATCAGGTAATATCAGTTGCCTCGGCCGTGGAAGTGTTGGATGCGCTGAATGCCGAGTGGTCATTCATTGATATCATACTTGCTGCAATTGACCTTCCTATAGAGGCAAGCATGAGCATGCTCAAGTATATAATGCAGGATCTGCATTTCAAACACATTCCGGTTATCAGTAAGCTTTACTTCTTCTTGTTTCGCCAGCCTTCTATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko04712 map04712

Pfam Domains

Protein Families

CCT IQ Response_reg

Protein Analysis

126

Amino Acids

14.01

Weight (kDa)

5.61

Isoelectric Point (pI)

45.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015629)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g14580 FvH4_5g14580
malus_domestica	MD14G1204500.v1.1
prunus_persica	Prupe.5G197800_v2.0.a1 Prupe.5G197800_v2.0.a1
pyrus_communis	pycom14g16900
rosa_chinensis	RchiOBHm_Chr7g0181971 RchiOBHm_Chr7g0181991
rosa_laevigata	RLG00000005163
rosa_roxburghii	Rroxscaffold_3G00271640
rosa_samantha	Rh7AG047300 Rh7BG047200 Rh7CG047500 Rh7DG046500
rosa_wichuraiana	Rw0G019680 Rw7G003920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	120
AclWI	GGATC	1 cut(s)	315
AcoI	YGGCCR	1 cut(s)	192
AcsI	RAATTY	1 cut(s)	102
AflIII	ACRYGT	1 cut(s)	75
AgsI	TTSAA	1 cut(s)	319
AluBI	AGCT	2 cut(s)	62, 343
AluI	AGCT	2 cut(s)	62, 343
AlwI	GGATC	1 cut(s)	315
AlwNI	CAGNNNCTG	1 cut(s)	310
AoxI	GGCC	1 cut(s)	192
ApeKI	GCWGC	2 cut(s)	36, 251
ApoI	RAATTY	1 cut(s)	102
AspLEI	GCGC	1 cut(s)	214
BbvI	GCAGC	2 cut(s)	48, 238
BccI	CCATC	1 cut(s)	80
BceAI	ACGGC	1 cut(s)	179
BfmI	CTRYAG	1 cut(s)	267
BisI	GCNGC	2 cut(s)	37, 252
BlsI	GCNGC	2 cut(s)	38, 253
BmsI	GCATC	1 cut(s)	199
BpuEI	CTTGAG	1 cut(s)	275
Bsa29I	ATCGAT	1 cut(s)	21
BsaJI	CCNNGG	3 cut(s)	81, 189, 195
BsaWI	WCCGGW	1 cut(s)	328
Bse3DI	GCAATG	1 cut(s)	149
BseCI	ATCGAT	1 cut(s)	21
BseDI	CCNNGG	3 cut(s)	81, 189, 195
BseGI	GGATG	2 cut(s)	91, 214
BseMI	GCAATG	1 cut(s)	149
BseRI	GAGGAG	1 cut(s)	152
BseX3I	CGGCCG	1 cut(s)	192
BseXI	GCAGC	2 cut(s)	48, 238
BseYI	CCCAGC	1 cut(s)	125
Bsh1236I	CGCG	1 cut(s)	120
Bsh1285I	CGRYCG	1 cut(s)	195
BshFI	GGCC	1 cut(s)	194
BshVI	ATCGAT	1 cut(s)	21
BsiEI	CGRYCG	1 cut(s)	195
BsiSI	CCGG	1 cut(s)	329
BsmI	GAATGC	1 cut(s)	223
BsnI	GGCC	1 cut(s)	194
Bsp143I	GATC	3 cut(s)	18, 115, 307
Bsp68I	TCGCGA	1 cut(s)	120
BspANI	GGCC	1 cut(s)	194
BspDI	ATCGAT	1 cut(s)	21
BspFNI	CGCG	1 cut(s)	120
BspPI	GGATC	1 cut(s)	315
BsrDI	GCAATG	1 cut(s)	149
BssECI	CCNNGG	3 cut(s)	81, 189, 195
BssMI	GATC	3 cut(s)	18, 115, 307
BstAPI	GCANNNNNTGC	1 cut(s)	310
BstC8I	GCNNGC	4 cut(s)	41, 277, 287, 365
BstDEI	CTNAG	1 cut(s)	63
BstDSI	CCRYGG	2 cut(s)	81, 195
BstF5I	GGATG	2 cut(s)	91, 214
BstFNI	CGCG	1 cut(s)	120
BstHHI	GCGC	1 cut(s)	214
BstKTI	GATC	3 cut(s)	21, 118, 310
BstMBI	GATC	3 cut(s)	18, 115, 307
BstMCI	CGRYCG	1 cut(s)	195
BstMWI	GCNNNNNNNGC	2 cut(s)	218, 310
BstNSI	RCATGY	3 cut(s)	79, 165, 289
BstSFI	CTRYAG	1 cut(s)	267
BstUI	CGCG	1 cut(s)	120
BstV1I	GCAGC	2 cut(s)	48, 238
BstX2I	RGATCY	1 cut(s)	307
BstYI	RGATCY	1 cut(s)	307
BstZI	CGGCCG	1 cut(s)	192
Bsu15I	ATCGAT	1 cut(s)	21
BsuRI	GGCC	1 cut(s)	194
BsuTUI	ATCGAT	1 cut(s)	21
BtgI	CCRYGG	2 cut(s)	81, 195
BtsCI	GGATG	2 cut(s)	91, 214
BtuMI	TCGCGA	1 cut(s)	120
Cac8I	GCNNGC	4 cut(s)	41, 277, 287, 365
CaiI	CAGNNNCTG	1 cut(s)	310
CfoI	GCGC	1 cut(s)	214
ClaI	ATCGAT	1 cut(s)	21
CseI	GACGC	1 cut(s)	131
CviAII	CATG	4 cut(s)	76, 162, 280, 286
CviJI	RGCY	4 cut(s)	62, 194, 343, 367
CviKI_1	RGCY	4 cut(s)	62, 194, 343, 367
DdeI	CTNAG	1 cut(s)	63
DpnI	GATC	3 cut(s)	20, 117, 309
DpnII	GATC	3 cut(s)	18, 115, 307
EaeI	YGGCCR	1 cut(s)	192
EagI	CGGCCG	1 cut(s)	192
EclXI	CGGCCG	1 cut(s)	192
Eco32I	GATATC	1 cut(s)	241
Eco52I	CGGCCG	1 cut(s)	192
EcoRV	GATATC	1 cut(s)	241
FaeI	CATG	4 cut(s)	79, 165, 283, 289
FalI	AAGNNNNNCTT	2 cut(s)	332, 364
FatI	CATG	4 cut(s)	75, 161, 279, 285
Fnu4HI	GCNGC	2 cut(s)	37, 252
FokI	GGATG	2 cut(s)	98, 221
Fsp4HI	GCNGC	2 cut(s)	37, 252
GlaI	GCGC	1 cut(s)	213
GluI	GCNGC	2 cut(s)	37, 252
GsaI	CCCAGC	1 cut(s)	129
HaeIII	GGCC	1 cut(s)	194
HapII	CCGG	1 cut(s)	329
HgaI	GACGC	1 cut(s)	131
HhaI	GCGC	1 cut(s)	214
Hin1II	CATG	4 cut(s)	79, 165, 283, 289
Hin6I	GCGC	1 cut(s)	212
HinP1I	GCGC	1 cut(s)	212
HindIII	AAGCTT	1 cut(s)	341
HpaII	CCGG	1 cut(s)	329
Hpy188III	TCNNGA	1 cut(s)	119
Hpy99I	CGWCG	1 cut(s)	125
HpyAV	CCTTC	2 cut(s)	272, 378
HpyCH4V	TGCA	5 cut(s)	147, 165, 254, 304, 313
HpyF10VI	GCNNNNNNNGC	2 cut(s)	218, 310
HpyF3I	CTNAG	1 cut(s)	63
Hsp92II	CATG	4 cut(s)	79, 165, 283, 289
HspAI	GCGC	1 cut(s)	212
Kzo9I	GATC	3 cut(s)	18, 115, 307
LpnPI	CCDG	5 cut(s)	25, 111, 158, 290, 342
Lsp1109I	GCAGC	2 cut(s)	48, 238
LweI	GCATC	1 cut(s)	199
MaeIII	GTNAC	1 cut(s)	29
MalI	GATC	3 cut(s)	20, 117, 309
MboI	GATC	3 cut(s)	18, 115, 307
MboII	GAAGA	1 cut(s)	343
MfeI	CAATTG	1 cut(s)	255
MflI	RGATCY	1 cut(s)	307
MluCI	AATT	2 cut(s)	102, 255
MmeI	TCCRAC	1 cut(s)	186
MnlI	CCTC	4 cut(s)	130, 133, 199, 265
MslI	CAYNNNNRTG	2 cut(s)	80, 284
MspI	CCGG	1 cut(s)	329
MunI	CAATTG	1 cut(s)	255
Mva1269I	GAATGC	1 cut(s)	223
MvnI	CGCG	1 cut(s)	120
MwoI	GCNNNNNNNGC	2 cut(s)	218, 310
NdeII	GATC	3 cut(s)	18, 115, 307
NlaIII	CATG	4 cut(s)	79, 165, 283, 289
NmeAIII	GCCGAG	2 cut(s)	170, 247
NruI	TCGCGA	1 cut(s)	120
NspI	RCATGY	3 cut(s)	79, 165, 289
PaeI	GCATGC	1 cut(s)	289
PciI	ACATGT	1 cut(s)	75
PctI	GAATGC	1 cut(s)	223
PkrI	GCNGC	2 cut(s)	38, 253
PscI	ACATGT	1 cut(s)	75
PspFI	CCCAGC	1 cut(s)	125
PstNI	CAGNNNCTG	1 cut(s)	310
PsuI	RGATCY	1 cut(s)	307
RruI	TCGCGA	1 cut(s)	120
RseI	CAYNNNNRTG	2 cut(s)	80, 284
SatI	GCNGC	2 cut(s)	37, 252
Sau3AI	GATC	3 cut(s)	18, 115, 307
SetI	ASST	5 cut(s)	64, 144, 177, 264, 345
SfaNI	GCATC	1 cut(s)	199
SfcI	CTRYAG	1 cut(s)	267
SmiMI	CAYNNNNRTG	2 cut(s)	80, 284
SmlI	CTYRAG	1 cut(s)	290
SmoI	CTYRAG	1 cut(s)	290
SphI	GCATGC	1 cut(s)	289
Sse9I	AATT	2 cut(s)	102, 255
TaqI	TCGA	1 cut(s)	21
TasI	AATT	2 cut(s)	102, 255
TseI	GCWGC	2 cut(s)	36, 251
TspDTI	ATGAA	1 cut(s)	223
TspGWI	ACGGA	1 cut(s)	70
XapI	RAATTY	1 cut(s)	102
XceI	RCATGY	3 cut(s)	79, 165, 289

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.