FvH4_5g16741

Lipid phosphate phosphatase

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
Physical Location & Seq
Forward (+)
9559854 .. 9560385
532 bp
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UTR
Exon/CDS
Intron
FvH4_5g16741.t1

Sequence Viewer

Length: 267 bp
ATGGCCAAGACATTTGCAGCATTCAAGATTCAGATGAGGAGGTTCCGGAGGAGGAGACGTTATCGTAGGCTAGGAAGTGTGGTTATTACTGAGGAACATGCAGCCGGAGGGAGAGGGAATCTAAAGTTTTGGAGAATTAGAGTGACCCCAAAACTGCGGCTCAAGGTTACAACATCATCGATGGCAGTTCTCAGAAGGCTTAGGAACGCTTATGTAGGAATGATGCTTTGTTTCGCTGGCCGTGTTGCGCAGTTGAATTCATGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

89

Amino Acids

10.29

Weight (kDa)

12.0

Isoelectric Point (pI)

64.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 249
AccIII TCCGGA 1 cut(s) 45
AciI CCGC 1 cut(s) 157
AcoI YGGCCR 2 cut(s) 3, 238
AcsI RAATTY 1 cut(s) 256
AgsI TTSAA 2 cut(s) 25, 256
Alw26I GTCTC 1 cut(s) 49
Aor13HI TCCGGA 1 cut(s) 45
AoxI GGCC 2 cut(s) 3, 238
ApeKI GCWGC 2 cut(s) 17, 101
ApoI RAATTY 1 cut(s) 256
AspLEI GCGC 1 cut(s) 250
BalI TGGCCA 1 cut(s) 5
BbvI GCAGC 2 cut(s) 29, 113
BccI CCATC 1 cut(s) 175
BceAI ACGGC 1 cut(s) 225
BcoDI GTCTC 1 cut(s) 49
BfaI CTAG 1 cut(s) 71
BisI GCNGC 3 cut(s) 18, 102, 158
BlsI GCNGC 3 cut(s) 19, 103, 159
BmiI GGNNCC 1 cut(s) 44
BmsI GCATC 1 cut(s) 213
Bpu10I CCTNAGC 1 cut(s) 200
BpuEI CTTGAG 1 cut(s) 146
Bsa29I ATCGAT 1 cut(s) 179
BsaWI WCCGGW 1 cut(s) 45
BsaXI ACNNNNNCTCC 2 cut(s) 43, 73
BseAI TCCGGA 1 cut(s) 45
BseCI ATCGAT 1 cut(s) 179
BseMII CTCAG 2 cut(s) 81, 205
BseRI GAGGAG 3 cut(s) 52, 64, 67
BseXI GCAGC 2 cut(s) 29, 113
BshFI GGCC 2 cut(s) 5, 240
BshVI ATCGAT 1 cut(s) 179
BsiSI CCGG 2 cut(s) 46, 105
BsmAI GTCTC 1 cut(s) 49
BsmBI CGTCTC 1 cut(s) 49
BsmI GAATGC 1 cut(s) 20
BsnI GGCC 2 cut(s) 5, 240
Bsp13I TCCGGA 1 cut(s) 45
BspACI CCGC 1 cut(s) 157
BspANI GGCC 2 cut(s) 5, 240
BspCNI CTCAG 2 cut(s) 82, 204
BspDI ATCGAT 1 cut(s) 179
BspEI TCCGGA 1 cut(s) 45
BspLI GGNNCC 1 cut(s) 44
BstC8I GCNNGC 1 cut(s) 238
BstDEI CTNAG 3 cut(s) 90, 191, 200
BstHHI GCGC 1 cut(s) 250
BstMAI GTCTC 1 cut(s) 49
BstNSI RCATGY 1 cut(s) 101
BstV1I GCAGC 2 cut(s) 29, 113
Bsu15I ATCGAT 1 cut(s) 179
BsuRI GGCC 2 cut(s) 5, 240
BsuTUI ATCGAT 1 cut(s) 179
Cac8I GCNNGC 1 cut(s) 238
CfoI GCGC 1 cut(s) 250
ClaI ATCGAT 1 cut(s) 179
CviAII CATG 2 cut(s) 98, 261
CviJI RGCY 6 cut(s) 5, 70, 104, 160, 199, 240
CviKI_1 RGCY 6 cut(s) 5, 70, 104, 160, 199, 240
DdeI CTNAG 3 cut(s) 90, 191, 200
EaeI YGGCCR 2 cut(s) 3, 238
EcoRI GAATTC 1 cut(s) 256
Esp3I CGTCTC 1 cut(s) 49
FaeI CATG 2 cut(s) 101, 264
FaiI YATR 3 cut(s) 99, 213, 262
FatI CATG 2 cut(s) 97, 260
Fnu4HI GCNGC 3 cut(s) 18, 102, 158
Fsp4HI GCNGC 3 cut(s) 18, 102, 158
FspBI CTAG 1 cut(s) 71
FspI TGCGCA 1 cut(s) 249
GlaI GCGC 1 cut(s) 249
GluI GCNGC 3 cut(s) 18, 102, 158
HaeIII GGCC 2 cut(s) 5, 240
HapII CCGG 2 cut(s) 46, 105
HhaI GCGC 1 cut(s) 250
Hin1II CATG 2 cut(s) 101, 264
Hin6I GCGC 1 cut(s) 248
HinP1I GCGC 1 cut(s) 248
HinfI GANTC 2 cut(s) 28, 118
HpaII CCGG 2 cut(s) 46, 105
Hpy188I TCNGA 2 cut(s) 33, 194
Hpy188III TCNNGA 2 cut(s) 25, 46
HpyAV CCTTC 1 cut(s) 189
HpyCH4IV ACGT 1 cut(s) 58
HpyCH4V TGCA 2 cut(s) 17, 101
HpyF3I CTNAG 3 cut(s) 90, 191, 200
HpySE526I ACGT 1 cut(s) 58
Hsp92II CATG 2 cut(s) 101, 264
HspAI GCGC 1 cut(s) 248
Kpn2I TCCGGA 1 cut(s) 45
LpnPI CCDG 3 cut(s) 59, 118, 222
Lsp1109I GCAGC 2 cut(s) 29, 113
LweI GCATC 1 cut(s) 213
MaeI CTAG 1 cut(s) 71
MaeII ACGT 1 cut(s) 58
MaeIII GTNAC 2 cut(s) 142, 166
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 2 cut(s) 135, 256
MluNI TGGCCA 1 cut(s) 5
MnlI CCTC 7 cut(s) 30, 33, 42, 45, 85, 101, 107
Mox20I TGGCCA 1 cut(s) 5
MroI TCCGGA 1 cut(s) 45
MscI TGGCCA 1 cut(s) 5
Msp20I TGGCCA 1 cut(s) 5
MspI CCGG 2 cut(s) 46, 105
Mva1269I GAATGC 1 cut(s) 20
NlaIII CATG 2 cut(s) 101, 264
NlaIV GGNNCC 1 cut(s) 44
NmuCI GTSAC 1 cut(s) 142
NsbI TGCGCA 1 cut(s) 249
NspI RCATGY 1 cut(s) 101
PctI GAATGC 1 cut(s) 20
PfeI GAWTC 2 cut(s) 28, 118
PkrI GCNGC 3 cut(s) 19, 103, 159
PspN4I GGNNCC 1 cut(s) 44
SatI GCNGC 3 cut(s) 18, 102, 158
SetI ASST 3 cut(s) 44, 61, 168
SfaNI GCATC 1 cut(s) 213
SgeI CNNG 9 cut(s) 19, 37, 58, 83, 110, 117, 175, 249, 254
SmlI CTYRAG 1 cut(s) 161
SmoI CTYRAG 1 cut(s) 161
Sse9I AATT 2 cut(s) 135, 256
SsiI CCGC 1 cut(s) 157
SspMI CTAG 1 cut(s) 71
TaiI ACGT 1 cut(s) 61
TaqI TCGA 1 cut(s) 179
TasI AATT 2 cut(s) 135, 256
TauI GCSGC 1 cut(s) 160
TfiI GAWTC 2 cut(s) 28, 118
TseFI GTSAC 1 cut(s) 142
TseI GCWGC 2 cut(s) 17, 101
Tsp45I GTSAC 1 cut(s) 142
TspDTI ATGAA 1 cut(s) 249
XapI RAATTY 1 cut(s) 256
XceI RCATGY 1 cut(s) 101
XspI CTAG 1 cut(s) 71
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.