RLG00000005364

Lipid phosphate phosphatase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0013678
Physical Location & Seq
Forward (+)
67078404 .. 67080305
1902 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000005364

Sequence Viewer

Length: 603 bp
ATGCAGGCATTTGCAGCATTCAAGATTCAGATGAGGAGGTCCCGGAGGAGGAGACGTTATCGTAGGCTAGGAAGTGTGGTTATTACTGAGGAAAATACAGCAGCAGGAGGGAGAGGGACTCTAAAGTTTTGGAAAATTAGAGTGACCCCGAAACTGCGGCTCAAGGTTACAACATCATCAATGGCTGTTCTGAGGAGGCTTAGGAATGCTTATGTGGGAATGATGCTTTGTTTTGCTGGCCGTGTTGCTCAGTTGAATTCATGCATGAAGATGGAGTGCTACAGAAGGAGGAGTAGATACAATAGACTAAGCAGCTTGGAAGGTAGTGATGATGAAGAAGATCAAGGCCAGAAGATTGCAGTTTTGGGAGGTCATCAAACTCAGAGTCATGTCAAGTACTACATGAAGAATGTAGTGCTAACAAAACTTCACCAGAAGATAGTGACATCATTCACACTTCTGAAGAAGCTTAGAGATGCTTATGTGGAAGTCATGCACAGCCTTGCTGAAAATGTTATGCAGTTGAACAATGGCAATTGTTACCTATTGATCAAGAAGCCACCAAGAGCTAGCTCCAAAGTTGTCACAAGCTTAAGAAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00561 ko00564 ko01110 map00561 map00564 map01110
Pfam Domains
Protein Families
PAP2

Protein Analysis

201

Amino Acids

23.12

Weight (kDa)

10.91

Isoelectric Point (pI)

56.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 157
AcoI YGGCCR 1 cut(s) 238
AcsI RAATTY 1 cut(s) 256
AcuI CTGAAG 1 cut(s) 482
AfaI GTAC 1 cut(s) 398
AfiI CCNNNNNNNGG 1 cut(s) 48
AflII CTTAAG 1 cut(s) 592
AgsI TTSAA 3 cut(s) 22, 256, 526
AluBI AGCT 5 cut(s) 315, 469, 569, 573, 591
AluI AGCT 5 cut(s) 315, 469, 569, 573, 591
Alw26I GTCTC 1 cut(s) 46
AoxI GGCC 2 cut(s) 238, 346
ApeKI GCWGC 3 cut(s) 14, 101, 312
ApoI RAATTY 1 cut(s) 256
ArsI GACNNNNNNTTYG 2 cut(s) 370, 402
AspS9I GGNCC 1 cut(s) 39
AsuC2I CCSGG 1 cut(s) 43
AsuHPI GGTGA 1 cut(s) 422
AsuNHI GCTAGC 1 cut(s) 569
AvaII GGWCC 1 cut(s) 39
BbvI GCAGC 3 cut(s) 26, 113, 324
BccI CCATC 1 cut(s) 265
BceAI ACGGC 1 cut(s) 225
BclI TGATCA 1 cut(s) 549
BcnI CCSGG 1 cut(s) 43
BcoDI GTCTC 1 cut(s) 46
BfaI CTAG 2 cut(s) 68, 570
BfmI CTRYAG 1 cut(s) 280
BfrI CTTAAG 1 cut(s) 592
BisI GCNGC 4 cut(s) 15, 102, 158, 313
BlsI GCNGC 4 cut(s) 16, 103, 159, 314
BmcAI AGTACT 1 cut(s) 398
Bme1390I CCNGG 1 cut(s) 43
Bme18I GGWCC 1 cut(s) 39
BmgT120I GGNCC 1 cut(s) 39
BmiI GGNNCC 1 cut(s) 41
BmrFI CCNGG 1 cut(s) 43
BmsI GCATC 2 cut(s) 213, 466
BmtI GCTAGC 1 cut(s) 573
BplI GAGNNNNNCTC 2 cut(s) 103, 135
Bpu10I CCTNAGC 1 cut(s) 200
BpuEI CTTGAG 1 cut(s) 146
BpuMI CCSGG 1 cut(s) 43
BsaXI ACNNNNNCTCC 2 cut(s) 40, 70
Bsc4I CCNNNNNNNGG 1 cut(s) 48
BseLI CCNNNNNNNGG 1 cut(s) 48
BseMII CTCAG 4 cut(s) 78, 182, 263, 395
BseRI GAGGAG 5 cut(s) 49, 61, 64, 208, 304
BseXI GCAGC 3 cut(s) 26, 113, 324
BshFI GGCC 2 cut(s) 240, 348
BsiSI CCGG 1 cut(s) 43
BslFI GGGAC 2 cut(s) 25, 130
BslI CCNNNNNNNGG 1 cut(s) 48
BsmAI GTCTC 1 cut(s) 46
BsmBI CGTCTC 1 cut(s) 46
BsmFI GGGAC 2 cut(s) 25, 130
BsmI GAATGC 2 cut(s) 17, 211
BsnI GGCC 2 cut(s) 240, 348
Bsp143I GATC 2 cut(s) 340, 549
BspACI CCGC 1 cut(s) 157
BspANI GGCC 2 cut(s) 240, 348
BspCNI CTCAG 4 cut(s) 79, 183, 262, 394
BspLI GGNNCC 1 cut(s) 41
BspOI GCTAGC 1 cut(s) 573
BspTI CTTAAG 1 cut(s) 592
BssMI GATC 2 cut(s) 340, 549
BstAFI CTTAAG 1 cut(s) 592
BstC8I GCNNGC 3 cut(s) 6, 238, 571
BstDEI CTNAG 7 cut(s) 87, 191, 200, 249, 308, 381, 470
BstKTI GATC 2 cut(s) 343, 552
BstMAI GTCTC 1 cut(s) 46
BstMBI GATC 2 cut(s) 340, 549
BstMWI GCNNNNNNNGC 1 cut(s) 14
BstSCI CCNGG 1 cut(s) 41
BstSFI CTRYAG 1 cut(s) 280
BstV1I GCAGC 3 cut(s) 26, 113, 324
BsuRI GGCC 2 cut(s) 240, 348
Cac8I GCNNGC 3 cut(s) 6, 238, 571
Cfr13I GGNCC 1 cut(s) 39
Csp6I GTAC 1 cut(s) 397
CviAII CATG 5 cut(s) 261, 265, 389, 403, 493
CviQI GTAC 1 cut(s) 397
DdeI CTNAG 7 cut(s) 87, 191, 200, 249, 308, 381, 470
DpnI GATC 2 cut(s) 342, 551
DpnII GATC 2 cut(s) 340, 549
EaeI YGGCCR 1 cut(s) 238
Eco47I GGWCC 1 cut(s) 39
Eco57I CTGAAG 1 cut(s) 482
EcoO109I RGGNCCY 1 cut(s) 39
EcoRI GAATTC 1 cut(s) 256
EcoT22I ATGCAT 1 cut(s) 266
Esp3I CGTCTC 1 cut(s) 46
FaeI CATG 5 cut(s) 264, 268, 392, 406, 496
FaiI YATR 8 cut(s) 213, 262, 266, 390, 404, 483, 494, 518
FaqI GGGAC 2 cut(s) 25, 130
FatI CATG 5 cut(s) 260, 264, 388, 402, 492
FbaI TGATCA 1 cut(s) 549
Fnu4HI GCNGC 4 cut(s) 15, 102, 158, 313
Fsp4HI GCNGC 4 cut(s) 15, 102, 158, 313
FspBI CTAG 2 cut(s) 68, 570
GluI GCNGC 4 cut(s) 15, 102, 158, 313
HaeIII GGCC 2 cut(s) 240, 348
HapII CCGG 1 cut(s) 43
Hin1II CATG 5 cut(s) 264, 268, 392, 406, 496
HindIII AAGCTT 2 cut(s) 467, 589
HinfI GANTC 3 cut(s) 25, 118, 385
HpaII CCGG 1 cut(s) 43
HphI GGTGA 1 cut(s) 422
Hpy188I TCNGA 4 cut(s) 30, 192, 384, 462
Hpy188III TCNNGA 2 cut(s) 22, 553
HpyAV CCTTC 2 cut(s) 279, 314
HpyCH4IV ACGT 1 cut(s) 55
HpyCH4V TGCA 6 cut(s) 4, 14, 264, 359, 496, 520
HpyF10VI GCNNNNNNNGC 1 cut(s) 14
HpyF3I CTNAG 7 cut(s) 87, 191, 200, 249, 308, 381, 470
HpySE526I ACGT 1 cut(s) 55
Hsp92II CATG 5 cut(s) 264, 268, 392, 406, 496
Ksp22I TGATCA 1 cut(s) 549
Kzo9I GATC 2 cut(s) 340, 549
LmnI GCTCC 1 cut(s) 578
LpnPI CCDG 5 cut(s) 56, 90, 222, 362, 446
Lsp1109I GCAGC 3 cut(s) 26, 113, 324
LweI GCATC 2 cut(s) 213, 466
MaeI CTAG 2 cut(s) 68, 570
MaeII ACGT 1 cut(s) 55
MaeIII GTNAC 5 cut(s) 142, 166, 442, 539, 583
MalI GATC 2 cut(s) 342, 551
MboI GATC 2 cut(s) 340, 549
MboII GAAGA 7 cut(s) 280, 347, 350, 364, 418, 448, 475
MfeI CAATTG 1 cut(s) 535
MluCI AATT 3 cut(s) 135, 256, 535
MlyI GAGTC 2 cut(s) 112, 394
Mph1103I ATGCAT 1 cut(s) 266
MseI TTAA 1 cut(s) 593
MslI CAYNNNNRTG 1 cut(s) 269
MspCI CTTAAG 1 cut(s) 592
MspI CCGG 1 cut(s) 43
MspR9I CCNGG 1 cut(s) 43
MunI CAATTG 1 cut(s) 535
Mva1269I GAATGC 2 cut(s) 17, 211
MwoI GCNNNNNNNGC 1 cut(s) 14
NciI CCSGG 1 cut(s) 43
NdeII GATC 2 cut(s) 340, 549
NheI GCTAGC 1 cut(s) 569
NlaIII CATG 5 cut(s) 264, 268, 392, 406, 496
NlaIV GGNNCC 1 cut(s) 41
NmuCI GTSAC 3 cut(s) 142, 442, 583
NsiI ATGCAT 1 cut(s) 266
PctI GAATGC 2 cut(s) 17, 211
PfeI GAWTC 1 cut(s) 25
PfoI TCCNGGA 1 cut(s) 41
PkrI GCNGC 4 cut(s) 16, 103, 159, 314
PleI GAGTC 2 cut(s) 112, 393
PpsI GAGTC 2 cut(s) 112, 393
PpuMI RGGWCCY 1 cut(s) 39
Psp5II RGGWCCY 1 cut(s) 39
PspN4I GGNNCC 1 cut(s) 41
PspPI GGNCC 1 cut(s) 39
PspPPI RGGWCCY 1 cut(s) 39
RsaI GTAC 1 cut(s) 398
RsaNI GTAC 1 cut(s) 397
RseI CAYNNNNRTG 1 cut(s) 269
SaqAI TTAA 1 cut(s) 593
SatI GCNGC 4 cut(s) 15, 102, 158, 313
Sau3AI GATC 2 cut(s) 340, 549
Sau96I GGNCC 1 cut(s) 39
ScaI AGTACT 1 cut(s) 398
SchI GAGTC 2 cut(s) 112, 394
ScrFI CCNGG 1 cut(s) 43
SfaNI GCATC 2 cut(s) 213, 466
SfcI CTRYAG 1 cut(s) 280
SinI GGWCC 1 cut(s) 39
SmiMI CAYNNNNRTG 1 cut(s) 269
SmlI CTYRAG 2 cut(s) 161, 592
SmoI CTYRAG 2 cut(s) 161, 592
Sse9I AATT 3 cut(s) 135, 256, 535
SsiI CCGC 1 cut(s) 157
SspMI CTAG 2 cut(s) 68, 570
StyD4I CCNGG 1 cut(s) 41
TaiI ACGT 1 cut(s) 58
TasI AATT 3 cut(s) 135, 256, 535
TatI WGTACW 1 cut(s) 396
TauI GCSGC 1 cut(s) 160
TfiI GAWTC 1 cut(s) 25
Tru1I TTAA 1 cut(s) 593
Tru9I TTAA 1 cut(s) 593
TseFI GTSAC 3 cut(s) 142, 442, 583
TseI GCWGC 3 cut(s) 14, 101, 312
Tsp45I GTSAC 3 cut(s) 142, 442, 583
TspDTI ATGAA 4 cut(s) 249, 281, 348, 419
Vha464I CTTAAG 1 cut(s) 592
VpaK11BI GGWCC 1 cut(s) 39
XapI RAATTY 1 cut(s) 256
XspI CTAG 2 cut(s) 68, 570
ZrmI AGTACT 1 cut(s) 398
Zsp2I ATGCAT 1 cut(s) 266
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.