Rh7CG023800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0013678
Physical Location & Seq
Reverse (-)
1700706 .. 1701188
483 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG023800.1

Sequence Viewer

Length: 483 bp
ATGATATTTGCTTTTGGTCTAATTTATTTAAAGCCCACCTCTGAACCACACCAACATTTGTTATGGCCATTAATCCCTGGCCTTTCACTTTTTTTACTTCTTTTTGGTATTGTAATCTGGGTATCTCTCTCCATTTTGGGGAGCATGAAGATGGAGTGCTTCAGAAGGAGGAGTAGATACAATAGACTAAGCAGCTTGGAAGGTAGTGATGATGAAGAAGATCAAGACCAGAAGATTGCAGTTTTGGGAGGTCATCAAACTCACAGTCATGTCAAGTACTACATGAAGAATGTAATGCTAACAAAACTTCACCAGAAGATAGTGACATCATTCACACTTCTGAAGAAGCTTAGAGATGCTTATGTGGAAGTCATGCACAGCCTTGCTGAAAATGTTATGCAGTTGAACAATGGCAATTCTTACCTATTGATCAAGAAGCCACCAAGAGCTAGCTCCAAAGTTGTCACAAGCTTAAGAAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

160

Amino Acids

18.41

Weight (kDa)

9.78

Isoelectric Point (pI)

37.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 65
AcuI CTGAAG 2 cut(s) 145, 362
AfaI GTAC 1 cut(s) 278
AfiI CCNNNNNNNGG 1 cut(s) 138
AflII CTTAAG 1 cut(s) 472
AgsI TTSAA 1 cut(s) 406
AjnI CCWGG 1 cut(s) 76
AluBI AGCT 5 cut(s) 195, 349, 449, 453, 471
AluI AGCT 5 cut(s) 195, 349, 449, 453, 471
AoxI GGCC 2 cut(s) 65, 79
ApeKI GCWGC 1 cut(s) 192
ArsI GACNNNNNNTTYG 2 cut(s) 250, 282
AseI ATTAAT 1 cut(s) 71
AsuHPI GGTGA 1 cut(s) 302
AsuNHI GCTAGC 1 cut(s) 449
BalI TGGCCA 1 cut(s) 67
BbvI GCAGC 1 cut(s) 204
BccI CCATC 1 cut(s) 145
BciT130I CCWGG 1 cut(s) 78
BclI TGATCA 1 cut(s) 429
BfaI CTAG 1 cut(s) 450
BfrI CTTAAG 1 cut(s) 472
BisI GCNGC 1 cut(s) 193
BlsI GCNGC 1 cut(s) 194
BmcAI AGTACT 1 cut(s) 278
Bme1390I CCNGG 1 cut(s) 78
BmrFI CCNGG 1 cut(s) 78
BmsI GCATC 1 cut(s) 346
BmtI GCTAGC 1 cut(s) 453
BsaJI CCNNGG 1 cut(s) 76
Bsc4I CCNNNNNNNGG 1 cut(s) 138
BseBI CCWGG 1 cut(s) 78
BseDI CCNNGG 1 cut(s) 76
BseLI CCNNNNNNNGG 1 cut(s) 138
BseRI GAGGAG 1 cut(s) 184
BseXI GCAGC 1 cut(s) 204
BshFI GGCC 2 cut(s) 67, 81
BslI CCNNNNNNNGG 1 cut(s) 138
BsnI GGCC 2 cut(s) 67, 81
Bsp143I GATC 2 cut(s) 220, 429
BspANI GGCC 2 cut(s) 67, 81
BspOI GCTAGC 1 cut(s) 453
BspTI CTTAAG 1 cut(s) 472
BssECI CCNNGG 1 cut(s) 76
BssMI GATC 2 cut(s) 220, 429
Bst2UI CCWGG 1 cut(s) 78
Bst4CI ACNGT 1 cut(s) 266
BstAFI CTTAAG 1 cut(s) 472
BstC8I GCNNGC 1 cut(s) 451
BstDEI CTNAG 2 cut(s) 188, 350
BstKTI GATC 2 cut(s) 223, 432
BstMBI GATC 2 cut(s) 220, 429
BstNI CCWGG 1 cut(s) 78
BstSCI CCNGG 1 cut(s) 76
BstV1I GCAGC 1 cut(s) 204
BsuRI GGCC 2 cut(s) 67, 81
Cac8I GCNNGC 1 cut(s) 451
Csp6I GTAC 1 cut(s) 277
CviAII CATG 4 cut(s) 145, 269, 283, 373
CviQI GTAC 1 cut(s) 277
DdeI CTNAG 2 cut(s) 188, 350
DpnI GATC 2 cut(s) 222, 431
DpnII GATC 2 cut(s) 220, 429
DraI TTTAAA 1 cut(s) 30
EaeI YGGCCR 1 cut(s) 65
Eco57I CTGAAG 2 cut(s) 145, 362
EcoRII CCWGG 1 cut(s) 76
FaeI CATG 4 cut(s) 148, 272, 286, 376
FaiI YATR 7 cut(s) 64, 146, 270, 284, 363, 374, 398
FatI CATG 4 cut(s) 144, 268, 282, 372
FbaI TGATCA 1 cut(s) 429
Fnu4HI GCNGC 1 cut(s) 193
Fsp4HI GCNGC 1 cut(s) 193
FspBI CTAG 1 cut(s) 450
GluI GCNGC 1 cut(s) 193
HaeIII GGCC 2 cut(s) 67, 81
Hin1II CATG 4 cut(s) 148, 272, 286, 376
HindIII AAGCTT 2 cut(s) 347, 469
HphI GGTGA 1 cut(s) 302
Hpy188I TCNGA 3 cut(s) 43, 164, 342
Hpy188III TCNNGA 2 cut(s) 224, 433
HpyAV CCTTC 2 cut(s) 159, 194
HpyCH4III ACNGT 1 cut(s) 266
HpyCH4V TGCA 3 cut(s) 239, 376, 400
HpyF3I CTNAG 2 cut(s) 188, 350
Hsp92II CATG 4 cut(s) 148, 272, 286, 376
Ksp22I TGATCA 1 cut(s) 429
Kzo9I GATC 2 cut(s) 220, 429
LmnI GCTCC 2 cut(s) 141, 458
LpnPI CCDG 5 cut(s) 63, 90, 103, 242, 326
Lsp1109I GCAGC 1 cut(s) 204
LweI GCATC 1 cut(s) 346
MaeI CTAG 1 cut(s) 450
MaeIII GTNAC 2 cut(s) 322, 463
MalI GATC 2 cut(s) 222, 431
MboI GATC 2 cut(s) 220, 429
MboII GAAGA 7 cut(s) 160, 227, 230, 244, 298, 328, 355
MlsI TGGCCA 1 cut(s) 67
MluCI AATT 2 cut(s) 21, 415
MluNI TGGCCA 1 cut(s) 67
MnlI CCTC 3 cut(s) 49, 162, 242
Mox20I TGGCCA 1 cut(s) 67
MscI TGGCCA 1 cut(s) 67
MseI TTAA 3 cut(s) 29, 71, 473
MslI CAYNNNNRTG 2 cut(s) 149, 267
Msp20I TGGCCA 1 cut(s) 67
MspCI CTTAAG 1 cut(s) 472
MspR9I CCNGG 1 cut(s) 78
MvaI CCWGG 1 cut(s) 78
NdeII GATC 2 cut(s) 220, 429
NheI GCTAGC 1 cut(s) 449
NlaIII CATG 4 cut(s) 148, 272, 286, 376
NmuCI GTSAC 2 cut(s) 322, 463
PkrI GCNGC 1 cut(s) 194
PshBI ATTAAT 1 cut(s) 71
Psp6I CCWGG 1 cut(s) 76
PspGI CCWGG 1 cut(s) 76
RsaI GTAC 1 cut(s) 278
RsaNI GTAC 1 cut(s) 277
RseI CAYNNNNRTG 2 cut(s) 149, 267
SaqAI TTAA 3 cut(s) 29, 71, 473
SatI GCNGC 1 cut(s) 193
Sau3AI GATC 2 cut(s) 220, 429
ScaI AGTACT 1 cut(s) 278
ScrFI CCNGG 1 cut(s) 78
SetI ASST 9 cut(s) 41, 197, 205, 253, 351, 426, 451, 455, 473
SfaNI GCATC 1 cut(s) 346
SmiMI CAYNNNNRTG 2 cut(s) 149, 267
SmlI CTYRAG 1 cut(s) 472
SmoI CTYRAG 1 cut(s) 472
Sse9I AATT 2 cut(s) 21, 415
SspMI CTAG 1 cut(s) 450
StyD4I CCNGG 1 cut(s) 76
TaaI ACNGT 1 cut(s) 266
TasI AATT 2 cut(s) 21, 415
TatI WGTACW 1 cut(s) 276
Tru1I TTAA 3 cut(s) 29, 71, 473
Tru9I TTAA 3 cut(s) 29, 71, 473
TseFI GTSAC 2 cut(s) 322, 463
TseI GCWGC 1 cut(s) 192
Tsp45I GTSAC 2 cut(s) 322, 463
TspDTI ATGAA 3 cut(s) 161, 228, 299
Vha464I CTTAAG 1 cut(s) 472
VspI ATTAAT 1 cut(s) 71
XspI CTAG 1 cut(s) 450
ZrmI AGTACT 1 cut(s) 278
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.