Rh7DG023300

Lipid phosphate phosphatase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0013678
Physical Location & Seq
Reverse (-)
1852770 .. 1853902
1133 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG023300.1

Sequence Viewer

Length: 285 bp
ATGCAGGCATTTGCAGCATTCAAGATTCAGATGAGGAGGTCCCGGAGGAGGAGACGTTATCGTAGGCTAGGAAGTGTGGTTATTACTGAGGAAAATGCAGCAGCAGGAGGGAGAGGGACTCTAAAGTTTTGGAAAATTAGAGTGACCCCGAAACTGCGGCTCAAGGTTACAACATCATCGATGGCTGTTCTGAGGAGGCTTAGGAATGCTTATGTGGGAATGATGCTTTGTTTTGCTGGCCGTGTTGCTCAGTTGAATTCATGTTCACTGTTTCTTCATGACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00561 ko00564 ko01110 map00561 map00564 map01110
Pfam Domains
Protein Families
PAP2

Protein Analysis

94

Amino Acids

10.85

Weight (kDa)

12.0

Isoelectric Point (pI)

64.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 157
AcoI YGGCCR 1 cut(s) 238
AcsI RAATTY 1 cut(s) 256
AfiI CCNNNNNNNGG 1 cut(s) 48
AgsI TTSAA 2 cut(s) 22, 256
Alw26I GTCTC 1 cut(s) 46
AoxI GGCC 1 cut(s) 238
ApeKI GCWGC 3 cut(s) 14, 98, 101
ApoI RAATTY 1 cut(s) 256
AspS9I GGNCC 1 cut(s) 39
AsuC2I CCSGG 1 cut(s) 43
AvaII GGWCC 1 cut(s) 39
BbvI GCAGC 3 cut(s) 26, 110, 113
BccI CCATC 1 cut(s) 175
BceAI ACGGC 1 cut(s) 225
BcnI CCSGG 1 cut(s) 43
BcoDI GTCTC 1 cut(s) 46
BfaI CTAG 1 cut(s) 68
BisI GCNGC 4 cut(s) 15, 99, 102, 158
BlsI GCNGC 4 cut(s) 16, 100, 103, 159
Bme1390I CCNGG 1 cut(s) 43
Bme18I GGWCC 1 cut(s) 39
BmgT120I GGNCC 1 cut(s) 39
BmiI GGNNCC 1 cut(s) 41
BmrFI CCNGG 1 cut(s) 43
BmsI GCATC 1 cut(s) 213
BplI GAGNNNNNCTC 2 cut(s) 103, 135
Bpu10I CCTNAGC 1 cut(s) 200
BpuEI CTTGAG 1 cut(s) 146
BpuMI CCSGG 1 cut(s) 43
Bsa29I ATCGAT 1 cut(s) 179
BsaXI ACNNNNNCTCC 2 cut(s) 40, 70
Bsc4I CCNNNNNNNGG 1 cut(s) 48
BseCI ATCGAT 1 cut(s) 179
BseLI CCNNNNNNNGG 1 cut(s) 48
BseMII CTCAG 3 cut(s) 78, 182, 263
BseRI GAGGAG 4 cut(s) 49, 61, 64, 208
BseXI GCAGC 3 cut(s) 26, 110, 113
BshFI GGCC 1 cut(s) 240
BshVI ATCGAT 1 cut(s) 179
BsiSI CCGG 1 cut(s) 43
BslFI GGGAC 2 cut(s) 25, 130
BslI CCNNNNNNNGG 1 cut(s) 48
BsmAI GTCTC 1 cut(s) 46
BsmBI CGTCTC 1 cut(s) 46
BsmFI GGGAC 2 cut(s) 25, 130
BsmI GAATGC 2 cut(s) 17, 211
BsnI GGCC 1 cut(s) 240
BspACI CCGC 1 cut(s) 157
BspANI GGCC 1 cut(s) 240
BspCNI CTCAG 3 cut(s) 79, 183, 262
BspDI ATCGAT 1 cut(s) 179
BspHI TCATGA 1 cut(s) 277
BspLI GGNNCC 1 cut(s) 41
Bst4CI ACNGT 1 cut(s) 270
BstC8I GCNNGC 2 cut(s) 6, 238
BstDEI CTNAG 4 cut(s) 87, 191, 200, 249
BstMAI GTCTC 1 cut(s) 46
BstMWI GCNNNNNNNGC 1 cut(s) 14
BstSCI CCNGG 1 cut(s) 41
BstV1I GCAGC 3 cut(s) 26, 110, 113
Bsu15I ATCGAT 1 cut(s) 179
BsuRI GGCC 1 cut(s) 240
BsuTUI ATCGAT 1 cut(s) 179
BtsIMutI CAGTG 1 cut(s) 266
Cac8I GCNNGC 2 cut(s) 6, 238
CciI TCATGA 1 cut(s) 277
Cfr13I GGNCC 1 cut(s) 39
ClaI ATCGAT 1 cut(s) 179
CviAII CATG 2 cut(s) 261, 278
CviJI RGCY 5 cut(s) 67, 160, 185, 199, 240
CviKI_1 RGCY 5 cut(s) 67, 160, 185, 199, 240
DdeI CTNAG 4 cut(s) 87, 191, 200, 249
EaeI YGGCCR 1 cut(s) 238
Eco47I GGWCC 1 cut(s) 39
EcoO109I RGGNCCY 1 cut(s) 39
EcoRI GAATTC 1 cut(s) 256
Esp3I CGTCTC 1 cut(s) 46
FaeI CATG 2 cut(s) 264, 281
FaiI YATR 3 cut(s) 213, 262, 279
FaqI GGGAC 2 cut(s) 25, 130
FatI CATG 2 cut(s) 260, 277
Fnu4HI GCNGC 4 cut(s) 15, 99, 102, 158
Fsp4HI GCNGC 4 cut(s) 15, 99, 102, 158
FspBI CTAG 1 cut(s) 68
GluI GCNGC 4 cut(s) 15, 99, 102, 158
HaeIII GGCC 1 cut(s) 240
HapII CCGG 1 cut(s) 43
Hin1II CATG 2 cut(s) 264, 281
HinfI GANTC 2 cut(s) 25, 118
HpaII CCGG 1 cut(s) 43
Hpy166II GTNNAC 1 cut(s) 266
Hpy188I TCNGA 2 cut(s) 30, 192
Hpy188III TCNNGA 2 cut(s) 22, 278
Hpy8I GTNNAC 1 cut(s) 266
HpyCH4III ACNGT 1 cut(s) 270
HpyCH4IV ACGT 1 cut(s) 55
HpyCH4V TGCA 3 cut(s) 4, 14, 98
HpyF10VI GCNNNNNNNGC 1 cut(s) 14
HpyF3I CTNAG 4 cut(s) 87, 191, 200, 249
HpySE526I ACGT 1 cut(s) 55
Hsp92II CATG 2 cut(s) 264, 281
LpnPI CCDG 3 cut(s) 56, 90, 222
Lsp1109I GCAGC 3 cut(s) 26, 110, 113
LweI GCATC 1 cut(s) 213
MaeI CTAG 1 cut(s) 68
MaeII ACGT 1 cut(s) 55
MaeIII GTNAC 2 cut(s) 142, 166
MboII GAAGA 1 cut(s) 266
MluCI AATT 2 cut(s) 135, 256
MlyI GAGTC 1 cut(s) 112
MnlI CCTC 9 cut(s) 27, 30, 39, 42, 82, 101, 107, 186, 189
MspI CCGG 1 cut(s) 43
MspR9I CCNGG 1 cut(s) 43
Mva1269I GAATGC 2 cut(s) 17, 211
MwoI GCNNNNNNNGC 1 cut(s) 14
NciI CCSGG 1 cut(s) 43
NlaIII CATG 2 cut(s) 264, 281
NlaIV GGNNCC 1 cut(s) 41
NmuCI GTSAC 1 cut(s) 142
PagI TCATGA 1 cut(s) 277
PctI GAATGC 2 cut(s) 17, 211
PfeI GAWTC 1 cut(s) 25
PfoI TCCNGGA 1 cut(s) 41
PkrI GCNGC 4 cut(s) 16, 100, 103, 159
PleI GAGTC 1 cut(s) 112
PpsI GAGTC 1 cut(s) 112
PpuMI RGGWCCY 1 cut(s) 39
Psp5II RGGWCCY 1 cut(s) 39
PspN4I GGNNCC 1 cut(s) 41
PspPI GGNCC 1 cut(s) 39
PspPPI RGGWCCY 1 cut(s) 39
SatI GCNGC 4 cut(s) 15, 99, 102, 158
Sau96I GGNCC 1 cut(s) 39
SchI GAGTC 1 cut(s) 112
ScrFI CCNGG 1 cut(s) 43
SetI ASST 3 cut(s) 41, 58, 168
SfaNI GCATC 1 cut(s) 213
SinI GGWCC 1 cut(s) 39
SmlI CTYRAG 1 cut(s) 161
SmoI CTYRAG 1 cut(s) 161
Sse9I AATT 2 cut(s) 135, 256
SsiI CCGC 1 cut(s) 157
SspMI CTAG 1 cut(s) 68
StyD4I CCNGG 1 cut(s) 41
TaaI ACNGT 1 cut(s) 270
TaiI ACGT 1 cut(s) 58
TaqI TCGA 1 cut(s) 179
TasI AATT 2 cut(s) 135, 256
TauI GCSGC 1 cut(s) 160
TfiI GAWTC 1 cut(s) 25
TscAI CASTG 1 cut(s) 273
TseFI GTSAC 1 cut(s) 142
TseI GCWGC 3 cut(s) 14, 98, 101
Tsp45I GTSAC 1 cut(s) 142
TspDTI ATGAA 2 cut(s) 249, 266
TspRI CASTG 1 cut(s) 273
VpaK11BI GGWCC 1 cut(s) 39
XapI RAATTY 1 cut(s) 256
XspI CTAG 1 cut(s) 68
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.