FvH4_5g17830

Zinc-finger homeodomain protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0016344
Physical Location & Seq
Reverse (-)
10214799 .. 10216071
1273 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g17830.t1

Sequence Viewer

Length: 798 bp
ATGAACATATATTATAATGCCAAGGACAAATTAAGTTACGAGTACCGCCAACATGGGCACTACTGTAAATATTCCAACCAAACAGTACCATATTCAAAACCCTTCTCTACTCACTCGTATATCATCAAGCTACTGAGGCTTACAGAACCAAAGAGAGAGAGAGATATGGAGGGAGAGAACTCATCCAACGATGTATACAGAGAGTGCCTCAGAAACCATGCAGCCAGTCTCGGCAGCTACGCCACCGACGGCTGCGGGGAGTTCACACTCGACGACACATCCTCCCCAGGCGGACTACAATGCGCCGCCTGCGGCTGCCACCGCAACTTCCACCGCCGTGTCACCTACGCACCCGGCGTAGGCAGATCATCCGGAGTAGCCGGCACTGCTCATCACCGCGTCATCAGCTGCAGCAGTCGAGGAGGCCGAGGAGATCTTCATCATGATATGATGACGTCACAGGAGCTGATTGACTACAATGTTGGCGGTGGAGGGGGAGCGGCTGCAAGGCAGATGATGGTGGTGGAGTCGCCGGACAGCGGGGACAGGAGCGGGAGCGGGAGGAAGAGGTTCAGGTCCAAGTTCACGGTGGAGCAGAAGGAGAAGATGCTGGCGTTTGCGGAGAAGCTGGGGTGGAAGCTGCAGAGGAAAGATCTAGAAGATGAGATTGAGAGGTTCTGCAGAAGTATTGGGGTGAGCAGACAGGTTTTCAAAGTGTGGATGCATAACCACAAGAACCTCTCCTCTTCTTCTTCAGCATCTACAACTGCCAATGCCTCTTCTCTCACAACCCAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ZF-HD_dimer

Protein Analysis

266

Amino Acids

29.56

Weight (kDa)

9.15

Isoelectric Point (pI)

59.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ZF-HD_dimer PF04770 65 - 115 6.7e-24 ZF-HD protein dimerisation region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016344)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g17830
malus_domestica MD06G1234500.v1.1 MD14G1241400.v1.1
prunus_persica Prupe.5G239000_v2.0.a1
pyrus_communis pycom06g20920
rosa_chinensis RchiOBHm_Chr7g0177751
rosa_laevigata RLG00000005507
rosa_multiflora Rmu_sc0006214.1_g000016
rosa_roxburghii Rroxscaffold_3G00275590
rosa_rugosa Rorug06G0409200
rosa_samantha Rh7AG008700 Rh7BG008900 Rh7CG009100 Rh7DG008900
rosa_wichuraiana Rw7G000720

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 15
AatII GACGTC 1 cut(s) 458
AccBSI CCGCTC 3 cut(s) 500, 552, 558
AccI GTMKAC 1 cut(s) 195
AccII CGCG 1 cut(s) 399
AccIII TCCGGA 1 cut(s) 371
AcuI CTGAAG 1 cut(s) 738
AcyI GRCGYC 1 cut(s) 455
AfaI GTAC 2 cut(s) 44, 87
AfiI CCNNNNNNNGG 2 cut(s) 359, 539
AgsI TTSAA 2 cut(s) 96, 712
AjnI CCWGG 1 cut(s) 286
AleI CACNNNNGTG 1 cut(s) 336
AluBI AGCT 6 cut(s) 130, 237, 408, 466, 628, 640
AluI AGCT 6 cut(s) 130, 237, 408, 466, 628, 640
Alw26I GTCTC 1 cut(s) 233
AlwNI CAGNNNCTG 1 cut(s) 466
Aor13HI TCCGGA 1 cut(s) 371
AoxI GGCC 1 cut(s) 424
ApeKI GCWGC 8 cut(s) 221, 234, 252, 315, 408, 411, 503, 640
Asp700I GAANNNNTTC 1 cut(s) 569
AspLEI GCGC 1 cut(s) 305
AspS9I GGNCC 1 cut(s) 576
AsuC2I CCSGG 1 cut(s) 354
AsuHPI GGTGA 3 cut(s) 334, 386, 706
AvaII GGWCC 1 cut(s) 576
BaeGI GKGCMC 1 cut(s) 60
BbvI GCAGC 8 cut(s) 233, 239, 246, 302, 395, 423, 490, 627
BccI CCATC 1 cut(s) 511
BceAI ACGGC 2 cut(s) 265, 321
BciT130I CCWGG 1 cut(s) 288
BcnI CCSGG 1 cut(s) 354
BcoDI GTCTC 1 cut(s) 233
BfaI CTAG 1 cut(s) 656
BfmI CTRYAG 3 cut(s) 409, 641, 679
BglII AGATCT 2 cut(s) 433, 652
Bme1390I CCNGG 2 cut(s) 288, 354
Bme18I GGWCC 1 cut(s) 576
BmgT120I GGNCC 1 cut(s) 576
BmrFI CCNGG 2 cut(s) 288, 354
BmrI ACTGGG 1 cut(s) 787
BmsI GCATC 3 cut(s) 597, 711, 767
BmuI ACTGGG 1 cut(s) 787
BplI GAGNNNNNCTC 2 cut(s) 192, 224
BpuMI CCSGG 1 cut(s) 354
BsaBI GATNNNNATC 1 cut(s) 438
BsaHI GRCGYC 1 cut(s) 455
BsaJI CCNNGG 3 cut(s) 21, 286, 427
BsaWI WCCGGW 1 cut(s) 371
BsaXI ACNNNNNCTCC 2 cut(s) 266, 296
Bsc4I CCNNNNNNNGG 2 cut(s) 359, 539
Bse118I RCCGGY 1 cut(s) 380
Bse1I ACTGG 2 cut(s) 225, 793
Bse8I GATNNNNATC 1 cut(s) 438
BseAI TCCGGA 1 cut(s) 371
BseBI CCWGG 1 cut(s) 288
BseDI CCNNGG 3 cut(s) 21, 286, 427
BseGI GGATG 4 cut(s) 182, 278, 368, 726
BseJI GATNNNNATC 1 cut(s) 438
BseLI CCNNNNNNNGG 2 cut(s) 359, 539
BseMII CTCAG 2 cut(s) 125, 223
BseNI ACTGG 2 cut(s) 225, 793
BseRI GAGGAG 3 cut(s) 435, 444, 733
BseSI GKGCMC 1 cut(s) 60
BseXI GCAGC 8 cut(s) 233, 239, 246, 302, 395, 423, 490, 627
BseYI CCCAGC 1 cut(s) 628
Bsh1236I CGCG 1 cut(s) 399
BshFI GGCC 1 cut(s) 426
BsiSI CCGG 4 cut(s) 354, 372, 381, 533
BslFI GGGAC 1 cut(s) 557
BslI CCNNNNNNNGG 2 cut(s) 359, 539
BsmAI GTCTC 1 cut(s) 233
BsmFI GGGAC 1 cut(s) 557
BsnI GGCC 1 cut(s) 426
Bsp1286I GDGCHC 1 cut(s) 60
Bsp13I TCCGGA 1 cut(s) 371
Bsp143I GATC 3 cut(s) 365, 433, 652
BspANI GGCC 1 cut(s) 426
BspCNI CTCAG 2 cut(s) 126, 222
BspEI TCCGGA 1 cut(s) 371
BspFNI CGCG 1 cut(s) 399
BspHI TCATGA 1 cut(s) 442
BspMAI CTGCAG 3 cut(s) 413, 645, 683
BsrBI CCGCTC 3 cut(s) 500, 552, 558
BsrFI RCCGGY 1 cut(s) 380
BsrI ACTGG 2 cut(s) 225, 793
BssAI RCCGGY 1 cut(s) 380
BssECI CCNNGG 3 cut(s) 21, 286, 427
BssMI GATC 3 cut(s) 365, 433, 652
BssNAI GTATAC 1 cut(s) 196
BssNI GRCGYC 1 cut(s) 455
BssT1I CCWWGG 1 cut(s) 21
Bst1107I GTATAC 1 cut(s) 196
Bst2UI CCWGG 1 cut(s) 288
Bst4CI ACNGT 3 cut(s) 65, 85, 589
Bst6I CTCTTC 3 cut(s) 560, 751, 784
BstACI GRCGYC 1 cut(s) 455
BstC8I GCNNGC 3 cut(s) 310, 382, 612
BstDEI CTNAG 2 cut(s) 134, 209
BstF5I GGATG 4 cut(s) 182, 278, 368, 726
BstFNI CGCG 1 cut(s) 399
BstHHI GCGC 1 cut(s) 305
BstKTI GATC 3 cut(s) 368, 436, 655
BstMAI GTCTC 1 cut(s) 233
BstMBI GATC 3 cut(s) 365, 433, 652
BstMWI GCNNNNNNNGC 5 cut(s) 136, 309, 321, 386, 405
BstNI CCWGG 1 cut(s) 288
BstSCI CCNGG 2 cut(s) 286, 352
BstSFI CTRYAG 3 cut(s) 409, 641, 679
BstSLI GKGCMC 1 cut(s) 60
BstUI CGCG 1 cut(s) 399
BstV1I GCAGC 8 cut(s) 233, 239, 246, 302, 395, 423, 490, 627
BstX2I RGATCY 2 cut(s) 433, 652
BstYI RGATCY 2 cut(s) 433, 652
BstZ17I GTATAC 1 cut(s) 196
BsuRI GGCC 1 cut(s) 426
BtsCI GGATG 4 cut(s) 182, 278, 368, 726
BtsI GCAGTG 1 cut(s) 384
BtsIMutI CAGTG 1 cut(s) 384
Cac8I GCNNGC 3 cut(s) 310, 382, 612
CaiI CAGNNNCTG 1 cut(s) 466
CciI TCATGA 1 cut(s) 442
CfoI GCGC 1 cut(s) 305
Cfr10I RCCGGY 1 cut(s) 380
Cfr13I GGNCC 1 cut(s) 576
CseI GACGC 1 cut(s) 388
Csp6I GTAC 2 cut(s) 43, 86
CviAII CATG 3 cut(s) 53, 218, 443
CviQI GTAC 2 cut(s) 43, 86
DdeI CTNAG 2 cut(s) 134, 209
DpnI GATC 3 cut(s) 367, 435, 654
DpnII GATC 3 cut(s) 365, 433, 652
Eam1104I CTCTTC 3 cut(s) 560, 751, 784
EarI CTCTTC 3 cut(s) 560, 751, 784
EciI GGCGGA 1 cut(s) 306
Eco130I CCWWGG 1 cut(s) 21
Eco47I GGWCC 1 cut(s) 576
Eco57I CTGAAG 1 cut(s) 738
EcoRII CCWGG 1 cut(s) 286
EcoT14I CCWWGG 1 cut(s) 21
EcoT22I ATGCAT 1 cut(s) 726
ErhI CCWWGG 1 cut(s) 21
FaeI CATG 3 cut(s) 56, 221, 446
FaqI GGGAC 1 cut(s) 557
FatI CATG 3 cut(s) 52, 217, 442
FauI CCCGC 4 cut(s) 248, 533, 545, 551
FblI GTMKAC 1 cut(s) 195
FokI GGATG 4 cut(s) 169, 265, 355, 733
FspBI CTAG 1 cut(s) 656
GlaI GCGC 1 cut(s) 304
GsaI CCCAGC 1 cut(s) 632
HaeIII GGCC 1 cut(s) 426
HapII CCGG 4 cut(s) 354, 372, 381, 533
HgaI GACGC 1 cut(s) 388
HhaI GCGC 1 cut(s) 305
Hin1I GRCGYC 1 cut(s) 455
Hin1II CATG 3 cut(s) 56, 221, 446
Hin6I GCGC 1 cut(s) 303
HinP1I GCGC 1 cut(s) 303
HinfI GANTC 1 cut(s) 527
HpaII CCGG 4 cut(s) 354, 372, 381, 533
HphI GGTGA 3 cut(s) 334, 386, 706
Hpy166II GTNNAC 3 cut(s) 196, 264, 585
Hpy188I TCNGA 1 cut(s) 212
Hpy188III TCNNGA 3 cut(s) 372, 443, 656
Hpy8I GTNNAC 3 cut(s) 196, 264, 585
Hpy99I CGWCG 2 cut(s) 251, 275
HpyAV CCTTC 2 cut(s) 112, 592
HpyCH4III ACNGT 3 cut(s) 65, 85, 589
HpyCH4IV ACGT 1 cut(s) 455
HpyCH4V TGCA 6 cut(s) 221, 411, 506, 643, 681, 724
HpyF10VI GCNNNNNNNGC 5 cut(s) 136, 309, 321, 386, 405
HpyF3I CTNAG 2 cut(s) 134, 209
HpySE526I ACGT 1 cut(s) 455
Hsp92I GRCGYC 1 cut(s) 455
Hsp92II CATG 3 cut(s) 56, 221, 446
HspAI GCGC 1 cut(s) 303
Kpn2I TCCGGA 1 cut(s) 371
KroI GCCGGC 1 cut(s) 380
KroNI GCCGGC 1 cut(s) 382
Kzo9I GATC 3 cut(s) 365, 433, 652
LmnI GCTCC 5 cut(s) 463, 497, 549, 555, 592
Lsp1109I GCAGC 8 cut(s) 233, 239, 246, 302, 395, 423, 490, 627
LweI GCATC 3 cut(s) 597, 711, 767
MaeI CTAG 1 cut(s) 656
MaeII ACGT 1 cut(s) 455
MaeIII GTNAC 3 cut(s) 35, 340, 456
MalI GATC 3 cut(s) 367, 435, 654
MbiI CCGCTC 3 cut(s) 500, 552, 558
MboI GATC 3 cut(s) 365, 433, 652
MboII GAAGA 8 cut(s) 428, 577, 616, 671, 738, 741, 744, 771
MflI RGATCY 2 cut(s) 433, 652
MhlI GDGCHC 1 cut(s) 60
MluCI AATT 1 cut(s) 29
MlyI GAGTC 1 cut(s) 536
MmeI TCCRAC 2 cut(s) 99, 210
Mph1103I ATGCAT 1 cut(s) 726
MroI TCCGGA 1 cut(s) 371
MroNI GCCGGC 1 cut(s) 380
MroXI GAANNNNTTC 1 cut(s) 569
MseI TTAA 1 cut(s) 32
MslI CAYNNNNRTG 1 cut(s) 336
MspA1I CMGCKG 2 cut(s) 408, 540
MspI CCGG 4 cut(s) 354, 372, 381, 533
MspR9I CCNGG 2 cut(s) 288, 354
MvaI CCWGG 1 cut(s) 288
MvnI CGCG 1 cut(s) 399
MwoI GCNNNNNNNGC 5 cut(s) 136, 309, 321, 386, 405
NaeI GCCGGC 1 cut(s) 382
NciI CCSGG 1 cut(s) 354
NdeII GATC 3 cut(s) 365, 433, 652
NgoMIV GCCGGC 1 cut(s) 380
NlaIII CATG 3 cut(s) 56, 221, 446
NmeAIII GCCGAG 2 cut(s) 210, 452
NmuCI GTSAC 2 cut(s) 340, 456
NsiI ATGCAT 1 cut(s) 726
OliI CACNNNNGTG 1 cut(s) 336
PagI TCATGA 1 cut(s) 442
PcsI WCGNNNNNNNCGW 2 cut(s) 354, 424
PdiI GCCGGC 1 cut(s) 382
PdmI GAANNNNTTC 1 cut(s) 569
PleI GAGTC 1 cut(s) 535
PpsI GAGTC 1 cut(s) 535
PsiI TTATAA 1 cut(s) 15
Psp6I CCWGG 1 cut(s) 286
PspFI CCCAGC 1 cut(s) 628
PspGI CCWGG 1 cut(s) 286
PspPI GGNCC 1 cut(s) 576
PstI CTGCAG 3 cut(s) 413, 645, 683
PstNI CAGNNNCTG 1 cut(s) 466
PsuI RGATCY 2 cut(s) 433, 652
PvuII CAGCTG 1 cut(s) 408
RsaI GTAC 2 cut(s) 44, 87
RsaNI GTAC 2 cut(s) 43, 86
RseI CAYNNNNRTG 1 cut(s) 336
SaqAI TTAA 1 cut(s) 32
Sau3AI GATC 3 cut(s) 365, 433, 652
Sau96I GGNCC 1 cut(s) 576
SchI GAGTC 1 cut(s) 536
ScrFI CCNGG 2 cut(s) 288, 354
SduI GDGCHC 1 cut(s) 60
SfaNI GCATC 3 cut(s) 597, 711, 767
SfcI CTRYAG 3 cut(s) 409, 641, 679
SinI GGWCC 1 cut(s) 576
SmiMI CAYNNNNRTG 1 cut(s) 336
Sse9I AATT 1 cut(s) 29
SspI AATATT 1 cut(s) 71
SspMI CTAG 1 cut(s) 656
StyD4I CCNGG 2 cut(s) 286, 352
StyI CCWWGG 1 cut(s) 21
TaaI ACNGT 3 cut(s) 65, 85, 589
TaiI ACGT 1 cut(s) 458
TaqI TCGA 2 cut(s) 270, 418
TasI AATT 1 cut(s) 29
TauI GCSGC 3 cut(s) 308, 315, 503
Tru1I TTAA 1 cut(s) 32
Tru9I TTAA 1 cut(s) 32
TscAI CASTG 1 cut(s) 391
TseFI GTSAC 2 cut(s) 340, 456
TseI GCWGC 8 cut(s) 221, 234, 252, 315, 408, 411, 503, 640
Tsp45I GTSAC 2 cut(s) 340, 456
TspDTI ATGAA 2 cut(s) 17, 428
TspRI CASTG 1 cut(s) 391
VpaK11BI GGWCC 1 cut(s) 576
XbaI TCTAGA 1 cut(s) 655
XcmI CCANNNNNNNNNTGG 1 cut(s) 586
XmiI GTMKAC 1 cut(s) 195
XmnI GAANNNNTTC 1 cut(s) 569
XspI CTAG 1 cut(s) 656
ZraI GACGTC 1 cut(s) 456
Zsp2I ATGCAT 1 cut(s) 726
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.