MD06G1234500.v1.1

Zinc-finger homeodomain protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr06
OG0016344
Physical Location & Seq
Reverse (-)
36543187 .. 36543795
609 bp
Loading structure...
UTR
Exon/CDS
Intron
MD06G1234500.v1.1.491

Sequence Viewer

Length: 609 bp
ATGGAAGGAGATCATGATCCGAACACAAACGATGTATACAGAGAGTGCTTGAGAAACCATGCAGCCAGCCTCGGCAGCTACGCTACAGATGGCTGCGGCGAGTTCACAGTTGACCACGCATCTCCAGGCGGCTTACAATGCGCCGCTTGTGGGTGCCACCGCAACTTCCACCGCAGAGTCACTTACGCAGCCACGTCATCTCAAGCTGCAGGAGGCGGTAGATCAGGTCATCTTCAACACCATGTCATCATGAGCTGCAGCAGCCGAGGTCGAGATCCCGCCGAAAATATCATAACAACACAAGACCAACTCATTGACTACAATGCCGGCGGAGGTGGGTCACCGGACAGCGGAGAGAGGATGAGCAGCGAGAAGAAGCGGTTCAGGACGAAGTTCACAGCGGAGCAGAAGGAGAAGATGCTGGCGTTTGCTGAGAAGTTGGGGTGGAAGCTGCTGAGAAAAGATCTAGAGGATGAGATAGAGACGTTCTGTAGGAGTGTAGGGGTAACCAGACAGGTGTTCAAAGTGTGGATGCATAACCACAAAAACCTTTCATCTTCTTCTACTTCTGCATCTACTGGCAATGCATCTTCTCTCACAACCCAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ZF-HD_dimer

Protein Analysis

203

Amino Acids

22.05

Weight (kDa)

7.67

Isoelectric Point (pI)

67.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ZF-HD_dimer PF04770 12 - 61 3.5e-23 ZF-HD protein dimerisation region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016344)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g17830
malus_domestica MD06G1234500.v1.1 MD14G1241400.v1.1
prunus_persica Prupe.5G239000_v2.0.a1
pyrus_communis pycom06g20920
rosa_chinensis RchiOBHm_Chr7g0177751
rosa_laevigata RLG00000005507
rosa_multiflora Rmu_sc0006214.1_g000016
rosa_roxburghii Rroxscaffold_3G00275590
rosa_rugosa Rorug06G0409200
rosa_samantha Rh7AG008700 Rh7BG008900 Rh7CG009100 Rh7DG008900
rosa_wichuraiana Rw7G000720

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 153
AccI GTMKAC 1 cut(s) 36
AclWI GGATC 2 cut(s) 11, 269
AfiI CCNNNNNNNGG 2 cut(s) 150, 350
AgsI TTSAA 2 cut(s) 236, 523
AjiI CACGTC 1 cut(s) 195
AjnI CCWGG 1 cut(s) 124
AluBI AGCT 4 cut(s) 78, 206, 255, 451
AluI AGCT 4 cut(s) 78, 206, 255, 451
Alw26I GTCTC 1 cut(s) 476
AlwI GGATC 2 cut(s) 11, 269
Asp700I GAANNNNTTC 1 cut(s) 380
AspLEI GCGC 1 cut(s) 143
AsuHPI GGTGA 1 cut(s) 333
BanI GGYRCC 1 cut(s) 153
BccI CCATC 1 cut(s) 83
BciT130I CCWGG 1 cut(s) 126
BcoDI GTCTC 1 cut(s) 476
BfaI CTAG 1 cut(s) 467
BfmI CTRYAG 4 cut(s) 84, 207, 256, 490
BglII AGATCT 1 cut(s) 463
Bme1390I CCNGG 1 cut(s) 126
BmgBI CACGTC 1 cut(s) 195
BmiI GGNNCC 1 cut(s) 155
BmrFI CCNGG 1 cut(s) 126
BmrI ACTGGG 1 cut(s) 598
BmsI GCATC 5 cut(s) 128, 408, 522, 581, 596
BmuI ACTGGG 1 cut(s) 598
BpmI CTGGAG 1 cut(s) 108
BpuEI CTTGAG 2 cut(s) 70, 186
BsaBI GATNNNNATC 1 cut(s) 15
BsaJI CCNNGG 2 cut(s) 70, 265
BsaWI WCCGGW 1 cut(s) 343
Bsc4I CCNNNNNNNGG 2 cut(s) 150, 350
Bse118I RCCGGY 1 cut(s) 326
Bse1I ACTGG 2 cut(s) 583, 604
Bse3DI GCAATG 1 cut(s) 589
Bse8I GATNNNNATC 1 cut(s) 15
BseBI CCWGG 1 cut(s) 126
BseDI CCNNGG 2 cut(s) 70, 265
BseGI GGATG 3 cut(s) 366, 478, 537
BseJI GATNNNNATC 1 cut(s) 15
BseLI CCNNNNNNNGG 2 cut(s) 150, 350
BseMI GCAATG 1 cut(s) 589
BseMII CTCAG 2 cut(s) 423, 446
BseNI ACTGG 2 cut(s) 583, 604
BshNI GGYRCC 1 cut(s) 153
BsiSI CCGG 2 cut(s) 327, 344
BslI CCNNNNNNNGG 2 cut(s) 150, 350
BsmAI GTCTC 1 cut(s) 476
BsmBI CGTCTC 1 cut(s) 476
Bsp143I GATC 5 cut(s) 10, 16, 221, 274, 463
BspCNI CTCAG 2 cut(s) 424, 447
BspHI TCATGA 2 cut(s) 13, 249
BspLI GGNNCC 1 cut(s) 155
BspMAI CTGCAG 2 cut(s) 211, 260
BspPI GGATC 2 cut(s) 11, 269
BspT107I GGYRCC 1 cut(s) 153
BsrDI GCAATG 1 cut(s) 589
BsrFI RCCGGY 1 cut(s) 326
BsrI ACTGG 2 cut(s) 583, 604
BssAI RCCGGY 1 cut(s) 326
BssECI CCNNGG 2 cut(s) 70, 265
BssMI GATC 5 cut(s) 10, 16, 221, 274, 463
BssNAI GTATAC 1 cut(s) 37
Bst1107I GTATAC 1 cut(s) 37
Bst2UI CCWGG 1 cut(s) 126
Bst4CI ACNGT 1 cut(s) 109
BstC8I GCNNGC 3 cut(s) 67, 328, 423
BstDEI CTNAG 2 cut(s) 432, 455
BstEII GGTNACC 2 cut(s) 339, 505
BstF5I GGATG 3 cut(s) 366, 478, 537
BstHHI GCGC 1 cut(s) 143
BstKTI GATC 5 cut(s) 13, 19, 224, 277, 466
BstMAI GTCTC 1 cut(s) 476
BstMBI GATC 5 cut(s) 10, 16, 221, 274, 463
BstMWI GCNNNNNNNGC 3 cut(s) 75, 138, 261
BstNI CCWGG 1 cut(s) 126
BstPI GGTNACC 2 cut(s) 339, 505
BstSCI CCNGG 1 cut(s) 124
BstSFI CTRYAG 4 cut(s) 84, 207, 256, 490
BstX2I RGATCY 2 cut(s) 274, 463
BstYI RGATCY 2 cut(s) 274, 463
BstZ17I GTATAC 1 cut(s) 37
BtrI CACGTC 1 cut(s) 195
BtsCI GGATG 3 cut(s) 366, 478, 537
Cac8I GCNNGC 3 cut(s) 67, 328, 423
CciI TCATGA 2 cut(s) 13, 249
CfoI GCGC 1 cut(s) 143
Cfr10I RCCGGY 1 cut(s) 326
CviAII CATG 4 cut(s) 14, 59, 242, 250
DdeI CTNAG 2 cut(s) 432, 455
DpnI GATC 5 cut(s) 12, 18, 223, 276, 465
DpnII GATC 5 cut(s) 10, 16, 221, 274, 463
EciI GGCGGA 1 cut(s) 345
Eco91I GGTNACC 2 cut(s) 339, 505
EcoO65I GGTNACC 2 cut(s) 339, 505
EcoRII CCWGG 1 cut(s) 124
EcoT22I ATGCAT 2 cut(s) 537, 589
Esp3I CGTCTC 1 cut(s) 476
FaeI CATG 4 cut(s) 17, 62, 245, 253
FaiI YATR 7 cut(s) 15, 37, 60, 243, 251, 293, 537
FatI CATG 4 cut(s) 13, 58, 241, 249
FauI CCCGC 1 cut(s) 286
FblI GTMKAC 1 cut(s) 36
FokI GGATG 3 cut(s) 373, 485, 544
FspBI CTAG 1 cut(s) 467
GlaI GCGC 1 cut(s) 142
GsuI CTGGAG 1 cut(s) 108
HapII CCGG 2 cut(s) 327, 344
HhaI GCGC 1 cut(s) 143
Hin1II CATG 4 cut(s) 17, 62, 245, 253
Hin6I GCGC 1 cut(s) 141
HinP1I GCGC 1 cut(s) 141
HincII GTYRAC 1 cut(s) 112
HindII GTYRAC 1 cut(s) 112
HinfI GANTC 1 cut(s) 177
HpaII CCGG 2 cut(s) 327, 344
HphI GGTGA 1 cut(s) 333
Hpy166II GTNNAC 4 cut(s) 37, 105, 112, 396
Hpy188I TCNGA 1 cut(s) 21
Hpy188III TCNNGA 5 cut(s) 14, 250, 272, 385, 467
Hpy8I GTNNAC 4 cut(s) 37, 105, 112, 396
HpyAV CCTTC 1 cut(s) 403
HpyCH4III ACNGT 1 cut(s) 109
HpyCH4IV ACGT 2 cut(s) 194, 485
HpyCH4V TGCA 6 cut(s) 62, 209, 258, 535, 572, 587
HpyF10VI GCNNNNNNNGC 3 cut(s) 75, 138, 261
HpyF3I CTNAG 2 cut(s) 432, 455
HpySE526I ACGT 2 cut(s) 194, 485
Hsp92II CATG 4 cut(s) 17, 62, 245, 253
HspAI GCGC 1 cut(s) 141
KroI GCCGGC 1 cut(s) 326
KroNI GCCGGC 1 cut(s) 328
Kzo9I GATC 5 cut(s) 10, 16, 221, 274, 463
LmnI GCTCC 1 cut(s) 403
LweI GCATC 5 cut(s) 128, 408, 522, 581, 596
MaeI CTAG 1 cut(s) 467
MaeII ACGT 2 cut(s) 194, 485
MaeIII GTNAC 3 cut(s) 178, 339, 505
MalI GATC 5 cut(s) 12, 18, 223, 276, 465
MboI GATC 5 cut(s) 10, 16, 221, 274, 463
MboII GAAGA 6 cut(s) 224, 385, 427, 549, 552, 582
MflI RGATCY 2 cut(s) 274, 463
MlyI GAGTC 1 cut(s) 186
MnlI CCTC 6 cut(s) 80, 206, 260, 326, 351, 463
Mph1103I ATGCAT 2 cut(s) 537, 589
MroNI GCCGGC 1 cut(s) 326
MroXI GAANNNNTTC 1 cut(s) 380
MspA1I CMGCKG 2 cut(s) 351, 401
MspI CCGG 2 cut(s) 327, 344
MspR9I CCNGG 1 cut(s) 126
MvaI CCWGG 1 cut(s) 126
MwoI GCNNNNNNNGC 3 cut(s) 75, 138, 261
NaeI GCCGGC 1 cut(s) 328
NdeII GATC 5 cut(s) 10, 16, 221, 274, 463
NgoMIV GCCGGC 1 cut(s) 326
NlaIII CATG 4 cut(s) 17, 62, 245, 253
NlaIV GGNNCC 1 cut(s) 155
NmeAIII GCCGAG 2 cut(s) 51, 290
NmuCI GTSAC 2 cut(s) 178, 339
NsiI ATGCAT 2 cut(s) 537, 589
PagI TCATGA 2 cut(s) 13, 249
PdiI GCCGGC 1 cut(s) 328
PdmI GAANNNNTTC 1 cut(s) 380
PleI GAGTC 1 cut(s) 185
PpsI GAGTC 1 cut(s) 185
Psp6I CCWGG 1 cut(s) 124
PspEI GGTNACC 2 cut(s) 339, 505
PspGI CCWGG 1 cut(s) 124
PspN4I GGNNCC 1 cut(s) 155
PstI CTGCAG 2 cut(s) 211, 260
PsuI RGATCY 2 cut(s) 274, 463
Sau3AI GATC 5 cut(s) 10, 16, 221, 274, 463
SchI GAGTC 1 cut(s) 186
ScrFI CCNGG 1 cut(s) 126
SfaNI GCATC 5 cut(s) 128, 408, 522, 581, 596
SfcI CTRYAG 4 cut(s) 84, 207, 256, 490
SmlI CTYRAG 2 cut(s) 49, 201
SmoI CTYRAG 2 cut(s) 49, 201
SspMI CTAG 1 cut(s) 467
StyD4I CCNGG 1 cut(s) 124
TaaI ACNGT 1 cut(s) 109
TaiI ACGT 2 cut(s) 197, 488
TaqI TCGA 1 cut(s) 271
TauI GCSGC 3 cut(s) 99, 132, 146
TseFI GTSAC 2 cut(s) 178, 339
Tsp45I GTSAC 2 cut(s) 178, 339
TspDTI ATGAA 1 cut(s) 543
XbaI TCTAGA 1 cut(s) 466
XmiI GTMKAC 1 cut(s) 36
XmnI GAANNNNTTC 1 cut(s) 380
XspI CTAG 1 cut(s) 467
Zsp2I ATGCAT 2 cut(s) 537, 589
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.