MD14G1241400.v1.1

Zinc-finger homeodomain protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr14
OG0016344
Physical Location & Seq
Reverse (-)
32002796 .. 32003401
606 bp
Loading structure...
UTR
Exon/CDS
Intron
MD14G1241400.v1.1.491

Sequence Viewer

Length: 606 bp
ATGGAGGGAGATCATGATCCAAACACAAACGAAGTATACAGAGAGTGCTTGAGAAACCATGCAGCCAGCCTCGGCAGCTACGCCACAGATGGCTGTGGCGAGTTCACACTTGACCACGCATCCCCAGGCGGCCTACAATGCGTCGCCTGCGGATGCCACCGCAACTTCCACCGCAGAGTCACTTACGCAGCCACGTCATCGCAAGCTGCAGGAGGCGGTAGATCAGGACATCAGCAACACCATGTCATCATGAGCTGCAGTAGCCGAGGTCGAGATCCCGCCGAAAATATCATAACACAAGACCAACTCATTGACTACAATGCCGGTGGAGGTGGGTCGCCGGACAGCGGAGAGAGGATGAGCAGCGGGAAGAAGCGGTTCAGGACGAAGTTCACGGCGGAGCAGAAGGAGAAGATGCTGGCGTTTGCTGAGAAGTTAGGGTGGAAGCTGCTGAGAAAAGATCTAGAGGACGAGATAGAGAGGTTCTGCAAGAGTGTAGGGGTAAGCAGACAGGTGTTCAAAGTGTGGATGCATAATCACAAAAACCTTTCATCTTCTTCTACTTCTGCATCCACCGGCAATGCATCTTCTCTCACTACCCAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ZF-HD_dimer

Protein Analysis

202

Amino Acids

21.96

Weight (kDa)

8.48

Isoelectric Point (pI)

64.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ZF-HD_dimer PF04770 12 - 61 1.8e-22 ZF-HD protein dimerisation region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016344)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g17830
malus_domestica MD06G1234500.v1.1 MD14G1241400.v1.1
prunus_persica Prupe.5G239000_v2.0.a1
pyrus_communis pycom06g20920
rosa_chinensis RchiOBHm_Chr7g0177751
rosa_laevigata RLG00000005507
rosa_multiflora Rmu_sc0006214.1_g000016
rosa_roxburghii Rroxscaffold_3G00275590
rosa_rugosa Rorug06G0409200
rosa_samantha Rh7AG008700 Rh7BG008900 Rh7CG009100 Rh7DG008900
rosa_wichuraiana Rw7G000720

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 36
AclWI GGATC 2 cut(s) 11, 269
AfiI CCNNNNNNNGG 1 cut(s) 347
AgsI TTSAA 1 cut(s) 520
AjiI CACGTC 1 cut(s) 195
AjnI CCWGG 1 cut(s) 124
AluBI AGCT 4 cut(s) 78, 206, 255, 448
AluI AGCT 4 cut(s) 78, 206, 255, 448
AlwI GGATC 2 cut(s) 11, 269
AoxI GGCC 1 cut(s) 130
ApeKI GCWGC 7 cut(s) 62, 75, 188, 206, 255, 363, 448
Asp700I GAANNNNTTC 1 cut(s) 377
BbvI GCAGC 7 cut(s) 74, 87, 193, 200, 242, 375, 435
BccI CCATC 1 cut(s) 83
BceAI ACGGC 1 cut(s) 411
BciT130I CCWGG 1 cut(s) 126
BfaI CTAG 1 cut(s) 464
BfmI CTRYAG 2 cut(s) 207, 256
BglII AGATCT 1 cut(s) 460
BisI GCNGC 8 cut(s) 63, 76, 130, 189, 207, 256, 364, 449
BlsI GCNGC 8 cut(s) 64, 77, 131, 190, 208, 257, 365, 450
Bme1390I CCNGG 1 cut(s) 126
BmgBI CACGTC 1 cut(s) 195
BmrFI CCNGG 1 cut(s) 126
BmrI ACTGGG 1 cut(s) 595
BmsI GCATC 6 cut(s) 128, 143, 405, 519, 578, 593
BmuI ACTGGG 1 cut(s) 595
BpuEI CTTGAG 1 cut(s) 70
BsaBI GATNNNNATC 1 cut(s) 15
BsaJI CCNNGG 3 cut(s) 70, 124, 265
Bsc4I CCNNNNNNNGG 1 cut(s) 347
Bse118I RCCGGY 2 cut(s) 323, 575
Bse1I ACTGG 1 cut(s) 601
Bse3DI GCAATG 1 cut(s) 586
Bse8I GATNNNNATC 1 cut(s) 15
BseBI CCWGG 1 cut(s) 126
BseDI CCNNGG 3 cut(s) 70, 124, 265
BseGI GGATG 5 cut(s) 119, 158, 363, 534, 569
BseJI GATNNNNATC 1 cut(s) 15
BseLI CCNNNNNNNGG 1 cut(s) 347
BseMI GCAATG 1 cut(s) 586
BseMII CTCAG 2 cut(s) 420, 443
BseNI ACTGG 1 cut(s) 601
BseXI GCAGC 7 cut(s) 74, 87, 193, 200, 242, 375, 435
BshFI GGCC 1 cut(s) 132
BsiSI CCGG 3 cut(s) 324, 341, 576
BslI CCNNNNNNNGG 1 cut(s) 347
BsnI GGCC 1 cut(s) 132
Bsp143I GATC 5 cut(s) 10, 16, 221, 274, 460
BspANI GGCC 1 cut(s) 132
BspCNI CTCAG 2 cut(s) 421, 444
BspHI TCATGA 2 cut(s) 13, 249
BspMAI CTGCAG 2 cut(s) 211, 260
BspPI GGATC 2 cut(s) 11, 269
BsrDI GCAATG 1 cut(s) 586
BsrFI RCCGGY 2 cut(s) 323, 575
BsrI ACTGG 1 cut(s) 601
BssAI RCCGGY 2 cut(s) 323, 575
BssECI CCNNGG 3 cut(s) 70, 124, 265
BssMI GATC 5 cut(s) 10, 16, 221, 274, 460
BssNAI GTATAC 1 cut(s) 37
Bst1107I GTATAC 1 cut(s) 37
Bst2UI CCWGG 1 cut(s) 126
BstC8I GCNNGC 4 cut(s) 67, 148, 204, 420
BstDEI CTNAG 2 cut(s) 429, 452
BstF5I GGATG 5 cut(s) 119, 158, 363, 534, 569
BstKTI GATC 5 cut(s) 13, 19, 224, 277, 463
BstMBI GATC 5 cut(s) 10, 16, 221, 274, 460
BstMWI GCNNNNNNNGC 4 cut(s) 75, 138, 147, 261
BstNI CCWGG 1 cut(s) 126
BstSCI CCNGG 1 cut(s) 124
BstSFI CTRYAG 2 cut(s) 207, 256
BstV1I GCAGC 7 cut(s) 74, 87, 193, 200, 242, 375, 435
BstX2I RGATCY 2 cut(s) 274, 460
BstYI RGATCY 2 cut(s) 274, 460
BstZ17I GTATAC 1 cut(s) 37
BsuRI GGCC 1 cut(s) 132
BtgZI GCGATG 1 cut(s) 183
BtrI CACGTC 1 cut(s) 195
BtsCI GGATG 5 cut(s) 119, 158, 363, 534, 569
Cac8I GCNNGC 4 cut(s) 67, 148, 204, 420
CciI TCATGA 2 cut(s) 13, 249
Cfr10I RCCGGY 2 cut(s) 323, 575
CseI GACGC 1 cut(s) 130
CspCI CAANNNNNGTGG 2 cut(s) 307, 342
CviAII CATG 4 cut(s) 14, 59, 242, 250
DdeI CTNAG 2 cut(s) 429, 452
DpnI GATC 5 cut(s) 12, 18, 223, 276, 462
DpnII GATC 5 cut(s) 10, 16, 221, 274, 460
EciI GGCGGA 1 cut(s) 413
EcoRII CCWGG 1 cut(s) 124
EcoT22I ATGCAT 2 cut(s) 534, 586
FaeI CATG 4 cut(s) 17, 62, 245, 253
FaiI YATR 7 cut(s) 15, 37, 60, 243, 251, 293, 534
FatI CATG 4 cut(s) 13, 58, 241, 249
FauI CCCGC 2 cut(s) 286, 359
FblI GTMKAC 1 cut(s) 36
Fnu4HI GCNGC 8 cut(s) 63, 76, 130, 189, 207, 256, 364, 449
FokI GGATG 5 cut(s) 106, 165, 370, 541, 556
Fsp4HI GCNGC 8 cut(s) 63, 76, 130, 189, 207, 256, 364, 449
FspBI CTAG 1 cut(s) 464
GluI GCNGC 8 cut(s) 63, 76, 130, 189, 207, 256, 364, 449
HaeIII GGCC 1 cut(s) 132
HapII CCGG 3 cut(s) 324, 341, 576
HgaI GACGC 1 cut(s) 130
Hin1II CATG 4 cut(s) 17, 62, 245, 253
HinfI GANTC 1 cut(s) 177
HpaII CCGG 3 cut(s) 324, 341, 576
Hpy166II GTNNAC 3 cut(s) 37, 105, 393
Hpy188III TCNNGA 6 cut(s) 14, 225, 250, 272, 382, 464
Hpy8I GTNNAC 3 cut(s) 37, 105, 393
Hpy99I CGWCG 1 cut(s) 146
HpyAV CCTTC 1 cut(s) 400
HpyCH4IV ACGT 1 cut(s) 194
HpyCH4V TGCA 7 cut(s) 62, 209, 258, 489, 532, 569, 584
HpyF10VI GCNNNNNNNGC 4 cut(s) 75, 138, 147, 261
HpyF3I CTNAG 2 cut(s) 429, 452
HpySE526I ACGT 1 cut(s) 194
Hsp92II CATG 4 cut(s) 17, 62, 245, 253
Kzo9I GATC 5 cut(s) 10, 16, 221, 274, 460
LmnI GCTCC 1 cut(s) 400
Lsp1109I GCAGC 7 cut(s) 74, 87, 193, 200, 242, 375, 435
LweI GCATC 6 cut(s) 128, 143, 405, 519, 578, 593
MaeI CTAG 1 cut(s) 464
MaeII ACGT 1 cut(s) 194
MaeIII GTNAC 1 cut(s) 178
MalI GATC 5 cut(s) 12, 18, 223, 276, 462
MboI GATC 5 cut(s) 10, 16, 221, 274, 460
MboII GAAGA 5 cut(s) 382, 424, 546, 549, 579
MflI RGATCY 2 cut(s) 274, 460
MlyI GAGTC 1 cut(s) 186
MnlI CCTC 7 cut(s) 80, 206, 260, 323, 348, 460, 474
Mph1103I ATGCAT 2 cut(s) 534, 586
MroXI GAANNNNTTC 1 cut(s) 377
MspA1I CMGCKG 2 cut(s) 348, 366
MspI CCGG 3 cut(s) 324, 341, 576
MspR9I CCNGG 1 cut(s) 126
MvaI CCWGG 1 cut(s) 126
MwoI GCNNNNNNNGC 4 cut(s) 75, 138, 147, 261
NdeII GATC 5 cut(s) 10, 16, 221, 274, 460
NlaIII CATG 4 cut(s) 17, 62, 245, 253
NmeAIII GCCGAG 2 cut(s) 51, 290
NmuCI GTSAC 1 cut(s) 178
NsiI ATGCAT 2 cut(s) 534, 586
PagI TCATGA 2 cut(s) 13, 249
PdmI GAANNNNTTC 1 cut(s) 377
PkrI GCNGC 8 cut(s) 64, 77, 131, 190, 208, 257, 365, 450
PleI GAGTC 1 cut(s) 185
PpsI GAGTC 1 cut(s) 185
Psp6I CCWGG 1 cut(s) 124
PspGI CCWGG 1 cut(s) 124
PstI CTGCAG 2 cut(s) 211, 260
PsuI RGATCY 2 cut(s) 274, 460
SatI GCNGC 8 cut(s) 63, 76, 130, 189, 207, 256, 364, 449
Sau3AI GATC 5 cut(s) 10, 16, 221, 274, 460
SchI GAGTC 1 cut(s) 186
ScrFI CCNGG 1 cut(s) 126
SfaNI GCATC 6 cut(s) 128, 143, 405, 519, 578, 593
SfcI CTRYAG 2 cut(s) 207, 256
SmlI CTYRAG 1 cut(s) 49
SmoI CTYRAG 1 cut(s) 49
SspMI CTAG 1 cut(s) 464
StyD4I CCNGG 1 cut(s) 124
TaiI ACGT 1 cut(s) 197
TaqI TCGA 1 cut(s) 271
TauI GCSGC 1 cut(s) 132
TseFI GTSAC 1 cut(s) 178
TseI GCWGC 7 cut(s) 62, 75, 188, 206, 255, 363, 448
Tsp45I GTSAC 1 cut(s) 178
TspDTI ATGAA 1 cut(s) 540
XbaI TCTAGA 1 cut(s) 463
XmiI GTMKAC 1 cut(s) 36
XmnI GAANNNNTTC 1 cut(s) 377
XspI CTAG 1 cut(s) 464
Zsp2I ATGCAT 2 cut(s) 534, 586
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.