Rh7CG009100

Zinc-finger homeodomain protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0016344
Physical Location & Seq
Forward (+)
721967 .. 725147
3181 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG009100.1

Sequence Viewer

Length: 699 bp
ATGCGCCTCTGCTTCTGTACACTGGTATATCATCAAGCACATAGCTATCTGAGGCTGAGAGAACCAGAGAAAAGAGAGATGGAAGGAGAGAACTCATCAAACGATGTATACAGAGAGTGCCTCAGAAACCATGCAGCCAGCCTCGGCAGCTATGCCACCGACGGGTGTGGAGAGTTTACACTCGACGACACCTCGTCCCCAGGCGGACTACAATGCGCCGCCTGCGGCTGCCACCGTAACTTCCACCGCCGAGTCACCTACGCACCCGGCGTAGGCAGATCATCCGGCGGTGGCACTGCTCATCATCGCGTCATCAGCTGCAGCAGCCGAGGAGATCTTCACCACGAGATGATGACGTCACAGGAACTGATTGACTACAATGTCGGCGGGGGAGGGGGAGCAGCGGCGCGGCAGATGATGGTGGTGGAGTCACCGGACAGCGGGGACAGGAGCGGCAGCGGGAGGAAGCGGTTCAGGTCCAAGTTCACGGTGGAGCAGAAGGAGAAGATGCTGGCGTTTGCGGAGAAGCTGGGGTGGAAGCTGCAGAGGAAAGATCTAGAAGATGAGATTGAGAGGTTCTGCAGAAGTATTGGGGTCAGCAGACAGGTTTTCAAAGTGTGGATGCATAACCACAAGAACCTCTCCTCTTCTTCTTCTGCATCTACAACTGCCAATGCCTCCTCTCTCACAACCCAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ZF-HD_dimer

Protein Analysis

232

Amino Acids

25.69

Weight (kDa)

8.74

Isoelectric Point (pI)

66.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ZF-HD_dimer PF04770 36 - 86 5.4e-24 ZF-HD protein dimerisation region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016344)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g17830
malus_domestica MD06G1234500.v1.1 MD14G1241400.v1.1
prunus_persica Prupe.5G239000_v2.0.a1
pyrus_communis pycom06g20920
rosa_chinensis RchiOBHm_Chr7g0177751
rosa_laevigata RLG00000005507
rosa_multiflora Rmu_sc0006214.1_g000016
rosa_roxburghii Rroxscaffold_3G00275590
rosa_rugosa Rorug06G0409200
rosa_samantha Rh7AG008700 Rh7BG008900 Rh7CG009100 Rh7DG008900
rosa_wichuraiana Rw7G000720

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 380
AatII GACGTC 1 cut(s) 359
AccBSI CCGCTC 1 cut(s) 453
AccI GTMKAC 1 cut(s) 108
AccII CGCG 2 cut(s) 309, 409
AcyI GRCGYC 1 cut(s) 356
AfaI GTAC 1 cut(s) 19
AfiI CCNNNNNNNGG 3 cut(s) 162, 272, 440
AgsI TTSAA 1 cut(s) 613
AhdI GACNNNNNGTC 1 cut(s) 193
AjnI CCWGG 1 cut(s) 199
AluBI AGCT 5 cut(s) 45, 150, 318, 529, 541
AluI AGCT 5 cut(s) 45, 150, 318, 529, 541
AlwNI CAGNNNCTG 1 cut(s) 367
ApeKI GCWGC 9 cut(s) 134, 147, 228, 318, 321, 324, 401, 456, 541
Asp700I GAANNNNTTC 1 cut(s) 470
AspLEI GCGC 3 cut(s) 6, 218, 409
AspS9I GGNCC 1 cut(s) 477
AsuC2I CCSGG 1 cut(s) 267
AsuHPI GGTGA 3 cut(s) 247, 332, 423
AvaII GGWCC 1 cut(s) 477
BauI CACGAG 1 cut(s) 344
BbvI GCAGC 9 cut(s) 146, 159, 215, 305, 333, 336, 413, 468, 528
BccI CCATC 2 cut(s) 73, 412
BciT130I CCWGG 1 cut(s) 201
BcnI CCSGG 1 cut(s) 267
BfaI CTAG 1 cut(s) 557
BfmI CTRYAG 3 cut(s) 319, 542, 580
BglII AGATCT 2 cut(s) 334, 553
Bme1390I CCNGG 2 cut(s) 201, 267
Bme18I GGWCC 1 cut(s) 477
BmeRI GACNNNNNGTC 1 cut(s) 193
BmgT120I GGNCC 1 cut(s) 477
BmrFI CCNGG 2 cut(s) 201, 267
BmrI ACTGGG 1 cut(s) 688
BmsI GCATC 3 cut(s) 498, 612, 668
BmuI ACTGGG 1 cut(s) 688
BplI GAGNNNNNCTC 2 cut(s) 105, 137
BpuMI CCSGG 1 cut(s) 267
BsaHI GRCGYC 1 cut(s) 356
BsaJI CCNNGG 3 cut(s) 142, 199, 328
BsaWI WCCGGW 1 cut(s) 433
Bsc4I CCNNNNNNNGG 3 cut(s) 162, 272, 440
Bse1I ACTGG 2 cut(s) 27, 694
BseBI CCWGG 1 cut(s) 201
BseDI CCNNGG 3 cut(s) 142, 199, 328
BseGI GGATG 2 cut(s) 281, 627
BseLI CCNNNNNNNGG 3 cut(s) 162, 272, 440
BseMII CTCAG 3 cut(s) 41, 47, 136
BseNI ACTGG 2 cut(s) 27, 694
BseRI GAGGAG 3 cut(s) 345, 634, 670
BseXI GCAGC 9 cut(s) 146, 159, 215, 305, 333, 336, 413, 468, 528
BseYI CCCAGC 1 cut(s) 529
Bsh1236I CGCG 2 cut(s) 309, 409
BsiSI CCGG 3 cut(s) 267, 285, 434
BslFI GGGAC 2 cut(s) 181, 458
BslI CCNNNNNNNGG 3 cut(s) 162, 272, 440
BsmFI GGGAC 2 cut(s) 181, 458
Bsp1407I TGTACA 1 cut(s) 17
Bsp143I GATC 3 cut(s) 278, 334, 553
BspCNI CTCAG 3 cut(s) 42, 48, 135
BspFNI CGCG 2 cut(s) 309, 409
BspMAI CTGCAG 3 cut(s) 323, 546, 584
BsrBI CCGCTC 1 cut(s) 453
BsrGI TGTACA 1 cut(s) 17
BsrI ACTGG 2 cut(s) 27, 694
BssECI CCNNGG 3 cut(s) 142, 199, 328
BssMI GATC 3 cut(s) 278, 334, 553
BssNAI GTATAC 1 cut(s) 109
BssNI GRCGYC 1 cut(s) 356
BssSI CACGAG 1 cut(s) 344
Bst1107I GTATAC 1 cut(s) 109
Bst2BI CACGAG 1 cut(s) 344
Bst2UI CCWGG 1 cut(s) 201
Bst4CI ACNGT 2 cut(s) 236, 490
Bst6I CTCTTC 1 cut(s) 652
BstACI GRCGYC 1 cut(s) 356
BstAUI TGTACA 1 cut(s) 17
BstC8I GCNNGC 3 cut(s) 139, 223, 513
BstDEI CTNAG 3 cut(s) 50, 56, 122
BstF5I GGATG 2 cut(s) 281, 627
BstFNI CGCG 2 cut(s) 309, 409
BstHHI GCGC 3 cut(s) 6, 218, 409
BstKTI GATC 3 cut(s) 281, 337, 556
BstMBI GATC 3 cut(s) 278, 334, 553
BstMWI GCNNNNNNNGC 4 cut(s) 147, 222, 315, 324
BstNI CCWGG 1 cut(s) 201
BstSCI CCNGG 2 cut(s) 199, 265
BstSFI CTRYAG 3 cut(s) 319, 542, 580
BstUI CGCG 2 cut(s) 309, 409
BstV1I GCAGC 9 cut(s) 146, 159, 215, 305, 333, 336, 413, 468, 528
BstX2I RGATCY 2 cut(s) 334, 553
BstYI RGATCY 2 cut(s) 334, 553
BstZ17I GTATAC 1 cut(s) 109
BtgZI GCGATG 1 cut(s) 290
BtsCI GGATG 2 cut(s) 281, 627
BtsI GCAGTG 1 cut(s) 294
BtsIMutI CAGTG 2 cut(s) 20, 294
Cac8I GCNNGC 3 cut(s) 139, 223, 513
CaiI CAGNNNCTG 1 cut(s) 367
CfoI GCGC 3 cut(s) 6, 218, 409
Cfr13I GGNCC 1 cut(s) 477
CseI GACGC 1 cut(s) 298
Csp6I GTAC 1 cut(s) 18
CviAII CATG 1 cut(s) 131
CviQI GTAC 1 cut(s) 18
DdeI CTNAG 3 cut(s) 50, 56, 122
DpnI GATC 3 cut(s) 280, 336, 555
DpnII GATC 3 cut(s) 278, 334, 553
DrdI GACNNNNNNGTC 1 cut(s) 380
DriI GACNNNNNGTC 1 cut(s) 193
DseDI GACNNNNNNGTC 1 cut(s) 380
Eam1104I CTCTTC 1 cut(s) 652
Eam1105I GACNNNNNGTC 1 cut(s) 193
EarI CTCTTC 1 cut(s) 652
EciI GGCGGA 1 cut(s) 219
Eco47I GGWCC 1 cut(s) 477
EcoRII CCWGG 1 cut(s) 199
EcoT22I ATGCAT 1 cut(s) 627
FaeI CATG 1 cut(s) 134
FaiI YATR 6 cut(s) 28, 42, 109, 132, 153, 627
FaqI GGGAC 2 cut(s) 181, 458
FatI CATG 1 cut(s) 130
FauI CCCGC 3 cut(s) 380, 434, 452
FblI GTMKAC 1 cut(s) 108
FokI GGATG 2 cut(s) 268, 634
FspBI CTAG 1 cut(s) 557
GlaI GCGC 3 cut(s) 5, 217, 408
GsaI CCCAGC 1 cut(s) 533
HapII CCGG 3 cut(s) 267, 285, 434
HgaI GACGC 1 cut(s) 298
HhaI GCGC 3 cut(s) 6, 218, 409
Hin1I GRCGYC 1 cut(s) 356
Hin1II CATG 1 cut(s) 134
Hin6I GCGC 3 cut(s) 4, 216, 407
HinP1I GCGC 3 cut(s) 4, 216, 407
HinfI GANTC 2 cut(s) 252, 428
HpaII CCGG 3 cut(s) 267, 285, 434
HphI GGTGA 3 cut(s) 247, 332, 423
Hpy166II GTNNAC 4 cut(s) 20, 109, 177, 486
Hpy188I TCNGA 2 cut(s) 51, 125
Hpy188III TCNNGA 1 cut(s) 557
Hpy8I GTNNAC 4 cut(s) 20, 109, 177, 486
Hpy99I CGWCG 2 cut(s) 164, 188
HpyAV CCTTC 2 cut(s) 77, 493
HpyCH4III ACNGT 2 cut(s) 236, 490
HpyCH4IV ACGT 1 cut(s) 356
HpyCH4V TGCA 6 cut(s) 134, 321, 544, 582, 625, 659
HpyF10VI GCNNNNNNNGC 4 cut(s) 147, 222, 315, 324
HpyF3I CTNAG 3 cut(s) 50, 56, 122
HpySE526I ACGT 1 cut(s) 356
Hsp92I GRCGYC 1 cut(s) 356
Hsp92II CATG 1 cut(s) 134
HspAI GCGC 3 cut(s) 4, 216, 407
Kzo9I GATC 3 cut(s) 278, 334, 553
LmnI GCTCC 3 cut(s) 398, 450, 493
Lsp1109I GCAGC 9 cut(s) 146, 159, 215, 305, 333, 336, 413, 468, 528
LweI GCATC 3 cut(s) 498, 612, 668
MaeI CTAG 1 cut(s) 557
MaeII ACGT 1 cut(s) 356
MaeIII GTNAC 4 cut(s) 236, 253, 357, 429
MalI GATC 3 cut(s) 280, 336, 555
MbiI CCGCTC 1 cut(s) 453
MboI GATC 3 cut(s) 278, 334, 553
MboII GAAGA 6 cut(s) 329, 517, 572, 639, 642, 645
MflI RGATCY 2 cut(s) 334, 553
MlyI GAGTC 2 cut(s) 261, 437
Mph1103I ATGCAT 1 cut(s) 627
MroXI GAANNNNTTC 1 cut(s) 470
MspA1I CMGCKG 4 cut(s) 318, 404, 441, 459
MspI CCGG 3 cut(s) 267, 285, 434
MspR9I CCNGG 2 cut(s) 201, 267
MvaI CCWGG 1 cut(s) 201
MvnI CGCG 2 cut(s) 309, 409
MwoI GCNNNNNNNGC 4 cut(s) 147, 222, 315, 324
NciI CCSGG 1 cut(s) 267
NdeII GATC 3 cut(s) 278, 334, 553
NlaIII CATG 1 cut(s) 134
NmeAIII GCCGAG 3 cut(s) 123, 275, 353
NmuCI GTSAC 3 cut(s) 253, 357, 429
NsiI ATGCAT 1 cut(s) 627
PcsI WCGNNNNNNNCGW 1 cut(s) 267
PdmI GAANNNNTTC 1 cut(s) 470
PleI GAGTC 2 cut(s) 260, 436
PpsI GAGTC 2 cut(s) 260, 436
Psp6I CCWGG 1 cut(s) 199
PspFI CCCAGC 1 cut(s) 529
PspGI CCWGG 1 cut(s) 199
PspPI GGNCC 1 cut(s) 477
PstI CTGCAG 3 cut(s) 323, 546, 584
PstNI CAGNNNCTG 1 cut(s) 367
PsuI RGATCY 2 cut(s) 334, 553
PvuII CAGCTG 1 cut(s) 318
RsaI GTAC 1 cut(s) 19
RsaNI GTAC 1 cut(s) 18
Sau3AI GATC 3 cut(s) 278, 334, 553
Sau96I GGNCC 1 cut(s) 477
SchI GAGTC 2 cut(s) 261, 437
ScrFI CCNGG 2 cut(s) 201, 267
SfaNI GCATC 3 cut(s) 498, 612, 668
SfcI CTRYAG 3 cut(s) 319, 542, 580
SinI GGWCC 1 cut(s) 477
SspMI CTAG 1 cut(s) 557
StyD4I CCNGG 2 cut(s) 199, 265
TaaI ACNGT 2 cut(s) 236, 490
TaiI ACGT 1 cut(s) 359
TaqI TCGA 1 cut(s) 183
TatI WGTACW 1 cut(s) 17
TauI GCSGC 5 cut(s) 221, 228, 407, 412, 456
TscAI CASTG 2 cut(s) 27, 301
TseFI GTSAC 3 cut(s) 253, 357, 429
TseI GCWGC 9 cut(s) 134, 147, 228, 318, 321, 324, 401, 456, 541
Tsp45I GTSAC 3 cut(s) 253, 357, 429
TspRI CASTG 2 cut(s) 27, 301
VpaK11BI GGWCC 1 cut(s) 477
XbaI TCTAGA 1 cut(s) 556
XcmI CCANNNNNNNNNTGG 1 cut(s) 487
XmiI GTMKAC 1 cut(s) 108
XmnI GAANNNNTTC 1 cut(s) 470
XspI CTAG 1 cut(s) 557
ZraI GACGTC 1 cut(s) 357
Zsp2I ATGCAT 1 cut(s) 627
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.