Rroxscaffold_3G00275590

Zinc-finger homeodomain protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0016344
Physical Location & Seq
Reverse (-)
66978306 .. 66979584
1279 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00275590.1

Sequence Viewer

Length: 765 bp
ATGGGCACTAGTGTAATTATTCCAACCAAACAGTACCATATTCAAAACCCCTATCTAATGCGCCTCGGCTTCTGTACACTGGTATATCATCAAGCACATAGCTATCAGAGGCTGAGAGAACCAGAGAAAAGAGAGATGGAGGGAGAGAACTCATCAAACGATGTATACAGAGAGTGCCTCAGAAACCATGCAGCCAGCCTCGGCAGCTATGCCACCGACGGGTGTGGAGAGTTTACACTCGACGACACCTCGTCCCCAGGCGGACTACAATGCGCCGCCTGCGGCTGCCACCGCAACTTCCACCGCCGAGTCACCTACGCACCCGGCCTAGGCAGATCATCCGGCGGCGGCACTGCTCATCATCGCGTCATCAGCTGCAGCAGCCGAGGAGGCCGAGGAGATCTTCACCACGAGATGATGACGTCACAGGAACTGATTGACTACAATGTCGGCGGTGGAGGGGGAGCAGCGGCGCGGCAGATGATGGTGGTGGAGTCACCGGACAGCGGGGACAGGAGCGGCAGCGGGAGGAAGCGGTTCAGGTCCAAGTTCACGGTGGAGCAGAAGGAGAAGATGCTGGCGTTTGCGGAGAAGCTGGGGTGGAAGCTGCAGAGGAAAGATCTGGAAGATGAGATTGAGAGGTTCTGCAGAAGTATTGGGGTCAGCAGACAGGTTTTCAAAGTGTGGATGCATAACCACAAGAACCTCTCGTCTTCTTCTTCTGCATCTACAACTGCCAATGCCTCCTCTCTCACAACCCAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ZF-HD_dimer

Protein Analysis

254

Amino Acids

28.13

Weight (kDa)

9.03

Isoelectric Point (pI)

63.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ZF-HD_dimer PF04770 55 - 105 6.2e-24 ZF-HD protein dimerisation region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016344)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g17830
malus_domestica MD06G1234500.v1.1 MD14G1241400.v1.1
prunus_persica Prupe.5G239000_v2.0.a1
pyrus_communis pycom06g20920
rosa_chinensis RchiOBHm_Chr7g0177751
rosa_laevigata RLG00000005507
rosa_multiflora Rmu_sc0006214.1_g000016
rosa_roxburghii Rroxscaffold_3G00275590
rosa_rugosa Rorug06G0409200
rosa_samantha Rh7AG008700 Rh7BG008900 Rh7CG009100 Rh7DG008900
rosa_wichuraiana Rw7G000720

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 446
AatII GACGTC 1 cut(s) 425
AccBSI CCGCTC 1 cut(s) 519
AccI GTMKAC 1 cut(s) 165
AccII CGCG 2 cut(s) 366, 475
AcyI GRCGYC 1 cut(s) 422
AfaI GTAC 2 cut(s) 35, 76
AfiI CCNNNNNNNGG 3 cut(s) 219, 329, 506
AgsI TTSAA 2 cut(s) 44, 679
AhdI GACNNNNNGTC 1 cut(s) 250
AhlI ACTAGT 1 cut(s) 8
AjnI CCWGG 1 cut(s) 256
AluBI AGCT 5 cut(s) 102, 207, 375, 595, 607
AluI AGCT 5 cut(s) 102, 207, 375, 595, 607
AlwNI CAGNNNCTG 2 cut(s) 112, 433
AoxI GGCC 2 cut(s) 325, 391
ApeKI GCWGC 9 cut(s) 191, 204, 285, 375, 378, 381, 467, 522, 607
Asp700I GAANNNNTTC 1 cut(s) 536
AspA2I CCTAGG 1 cut(s) 328
AspLEI GCGC 3 cut(s) 63, 275, 475
AspS9I GGNCC 1 cut(s) 543
AsuC2I CCSGG 1 cut(s) 324
AsuHPI GGTGA 3 cut(s) 304, 398, 489
AvaII GGWCC 1 cut(s) 543
AvrII CCTAGG 1 cut(s) 328
BaeGI GKGCMC 1 cut(s) 8
BauI CACGAG 1 cut(s) 410
BbsI GAAGAC 1 cut(s) 705
BbvI GCAGC 9 cut(s) 203, 216, 272, 362, 390, 393, 479, 534, 594
BccI CCATC 2 cut(s) 130, 478
BciT130I CCWGG 1 cut(s) 258
BcnI CCSGG 1 cut(s) 324
BcuI ACTAGT 1 cut(s) 8
BfaI CTAG 2 cut(s) 9, 329
BfmI CTRYAG 3 cut(s) 376, 608, 646
BglI GCCNNNNNGGC 1 cut(s) 390
BglII AGATCT 2 cut(s) 400, 619
BlnI CCTAGG 1 cut(s) 328
Bme1390I CCNGG 2 cut(s) 258, 324
Bme18I GGWCC 1 cut(s) 543
BmeRI GACNNNNNGTC 1 cut(s) 250
BmgT120I GGNCC 1 cut(s) 543
BmrFI CCNGG 2 cut(s) 258, 324
BmrI ACTGGG 1 cut(s) 754
BmsI GCATC 3 cut(s) 564, 678, 734
BmuI ACTGGG 1 cut(s) 754
BpiI GAAGAC 1 cut(s) 705
BplI GAGNNNNNCTC 2 cut(s) 162, 194
BpuMI CCSGG 1 cut(s) 324
BsaHI GRCGYC 1 cut(s) 422
BsaJI CCNNGG 6 cut(s) 64, 199, 256, 328, 385, 394
BsaWI WCCGGW 1 cut(s) 499
Bsc4I CCNNNNNNNGG 3 cut(s) 219, 329, 506
Bse1I ACTGG 2 cut(s) 84, 760
BseBI CCWGG 1 cut(s) 258
BseDI CCNNGG 6 cut(s) 64, 199, 256, 328, 385, 394
BseGI GGATG 2 cut(s) 338, 693
BseLI CCNNNNNNNGG 3 cut(s) 219, 329, 506
BseMII CTCAG 2 cut(s) 104, 193
BseNI ACTGG 2 cut(s) 84, 760
BseRI GAGGAG 3 cut(s) 402, 411, 736
BseSI GKGCMC 1 cut(s) 8
BseXI GCAGC 9 cut(s) 203, 216, 272, 362, 390, 393, 479, 534, 594
BseYI CCCAGC 1 cut(s) 595
Bsh1236I CGCG 2 cut(s) 366, 475
BshFI GGCC 2 cut(s) 327, 393
BsiSI CCGG 3 cut(s) 324, 342, 500
BslFI GGGAC 2 cut(s) 238, 524
BslI CCNNNNNNNGG 3 cut(s) 219, 329, 506
BsmFI GGGAC 2 cut(s) 238, 524
BsnI GGCC 2 cut(s) 327, 393
Bsp1286I GDGCHC 1 cut(s) 8
Bsp1407I TGTACA 1 cut(s) 74
Bsp143I GATC 3 cut(s) 335, 400, 619
BspANI GGCC 2 cut(s) 327, 393
BspCNI CTCAG 2 cut(s) 105, 192
BspFNI CGCG 2 cut(s) 366, 475
BspMAI CTGCAG 3 cut(s) 380, 612, 650
BsrBI CCGCTC 1 cut(s) 519
BsrGI TGTACA 1 cut(s) 74
BsrI ACTGG 2 cut(s) 84, 760
BssECI CCNNGG 6 cut(s) 64, 199, 256, 328, 385, 394
BssMI GATC 3 cut(s) 335, 400, 619
BssNAI GTATAC 1 cut(s) 166
BssNI GRCGYC 1 cut(s) 422
BssSI CACGAG 1 cut(s) 410
BssT1I CCWWGG 1 cut(s) 328
Bst1107I GTATAC 1 cut(s) 166
Bst2BI CACGAG 1 cut(s) 410
Bst2UI CCWGG 1 cut(s) 258
Bst4CI ACNGT 2 cut(s) 33, 556
BstACI GRCGYC 1 cut(s) 422
BstAUI TGTACA 1 cut(s) 74
BstC8I GCNNGC 3 cut(s) 196, 280, 579
BstDEI CTNAG 2 cut(s) 113, 179
BstF5I GGATG 2 cut(s) 338, 693
BstFNI CGCG 2 cut(s) 366, 475
BstHHI GCGC 3 cut(s) 63, 275, 475
BstKTI GATC 3 cut(s) 338, 403, 622
BstMBI GATC 3 cut(s) 335, 400, 619
BstMWI GCNNNNNNNGC 6 cut(s) 204, 279, 291, 372, 381, 390
BstNI CCWGG 1 cut(s) 258
BstSCI CCNGG 2 cut(s) 256, 322
BstSFI CTRYAG 3 cut(s) 376, 608, 646
BstSLI GKGCMC 1 cut(s) 8
BstUI CGCG 2 cut(s) 366, 475
BstV1I GCAGC 9 cut(s) 203, 216, 272, 362, 390, 393, 479, 534, 594
BstV2I GAAGAC 1 cut(s) 705
BstX2I RGATCY 2 cut(s) 400, 619
BstYI RGATCY 2 cut(s) 400, 619
BstZ17I GTATAC 1 cut(s) 166
BsuRI GGCC 2 cut(s) 327, 393
BtgZI GCGATG 1 cut(s) 347
BtsCI GGATG 2 cut(s) 338, 693
BtsI GCAGTG 1 cut(s) 351
BtsIMutI CAGTG 2 cut(s) 77, 351
Cac8I GCNNGC 3 cut(s) 196, 280, 579
CaiI CAGNNNCTG 2 cut(s) 112, 433
CfoI GCGC 3 cut(s) 63, 275, 475
Cfr13I GGNCC 1 cut(s) 543
CseI GACGC 1 cut(s) 355
Csp6I GTAC 2 cut(s) 34, 75
CviAII CATG 1 cut(s) 188
CviQI GTAC 2 cut(s) 34, 75
DdeI CTNAG 2 cut(s) 113, 179
DpnI GATC 3 cut(s) 337, 402, 621
DpnII GATC 3 cut(s) 335, 400, 619
DrdI GACNNNNNNGTC 1 cut(s) 446
DriI GACNNNNNGTC 1 cut(s) 250
DseDI GACNNNNNNGTC 1 cut(s) 446
Eam1105I GACNNNNNGTC 1 cut(s) 250
EciI GGCGGA 1 cut(s) 276
Eco130I CCWWGG 1 cut(s) 328
Eco47I GGWCC 1 cut(s) 543
EcoRII CCWGG 1 cut(s) 256
EcoT14I CCWWGG 1 cut(s) 328
EcoT22I ATGCAT 1 cut(s) 693
ErhI CCWWGG 1 cut(s) 328
FaeI CATG 1 cut(s) 191
FaiI YATR 7 cut(s) 39, 85, 99, 166, 189, 210, 693
FaqI GGGAC 2 cut(s) 238, 524
FatI CATG 1 cut(s) 187
FauI CCCGC 2 cut(s) 500, 518
FblI GTMKAC 1 cut(s) 165
FokI GGATG 2 cut(s) 325, 700
FspBI CTAG 2 cut(s) 9, 329
GlaI GCGC 3 cut(s) 62, 274, 474
GsaI CCCAGC 1 cut(s) 599
HaeIII GGCC 2 cut(s) 327, 393
HapII CCGG 3 cut(s) 324, 342, 500
HgaI GACGC 1 cut(s) 355
HhaI GCGC 3 cut(s) 63, 275, 475
Hin1I GRCGYC 1 cut(s) 422
Hin1II CATG 1 cut(s) 191
Hin6I GCGC 3 cut(s) 61, 273, 473
HinP1I GCGC 3 cut(s) 61, 273, 473
HinfI GANTC 2 cut(s) 309, 494
HpaII CCGG 3 cut(s) 324, 342, 500
HphI GGTGA 3 cut(s) 304, 398, 489
Hpy166II GTNNAC 4 cut(s) 77, 166, 234, 552
Hpy188I TCNGA 2 cut(s) 108, 182
Hpy188III TCNNGA 1 cut(s) 623
Hpy8I GTNNAC 4 cut(s) 77, 166, 234, 552
Hpy99I CGWCG 2 cut(s) 221, 245
HpyAV CCTTC 1 cut(s) 559
HpyCH4III ACNGT 2 cut(s) 33, 556
HpyCH4IV ACGT 1 cut(s) 422
HpyCH4V TGCA 6 cut(s) 191, 378, 610, 648, 691, 725
HpyF10VI GCNNNNNNNGC 6 cut(s) 204, 279, 291, 372, 381, 390
HpyF3I CTNAG 2 cut(s) 113, 179
HpySE526I ACGT 1 cut(s) 422
Hsp92I GRCGYC 1 cut(s) 422
Hsp92II CATG 1 cut(s) 191
HspAI GCGC 3 cut(s) 61, 273, 473
Kzo9I GATC 3 cut(s) 335, 400, 619
LmnI GCTCC 3 cut(s) 464, 516, 559
Lsp1109I GCAGC 9 cut(s) 203, 216, 272, 362, 390, 393, 479, 534, 594
LweI GCATC 3 cut(s) 564, 678, 734
MaeI CTAG 2 cut(s) 9, 329
MaeII ACGT 1 cut(s) 422
MaeIII GTNAC 3 cut(s) 310, 423, 495
MalI GATC 3 cut(s) 337, 402, 621
MbiI CCGCTC 1 cut(s) 519
MboI GATC 3 cut(s) 335, 400, 619
MboII GAAGA 6 cut(s) 395, 583, 638, 705, 708, 711
MflI RGATCY 2 cut(s) 400, 619
MhlI GDGCHC 1 cut(s) 8
MluCI AATT 1 cut(s) 15
MlyI GAGTC 2 cut(s) 318, 503
MmeI TCCRAC 1 cut(s) 47
Mph1103I ATGCAT 1 cut(s) 693
MroXI GAANNNNTTC 1 cut(s) 536
MspA1I CMGCKG 4 cut(s) 375, 470, 507, 525
MspI CCGG 3 cut(s) 324, 342, 500
MspR9I CCNGG 2 cut(s) 258, 324
MvaI CCWGG 1 cut(s) 258
MvnI CGCG 2 cut(s) 366, 475
MwoI GCNNNNNNNGC 6 cut(s) 204, 279, 291, 372, 381, 390
NciI CCSGG 1 cut(s) 324
NdeII GATC 3 cut(s) 335, 400, 619
NlaIII CATG 1 cut(s) 191
NmeAIII GCCGAG 5 cut(s) 45, 180, 332, 410, 419
NmuCI GTSAC 3 cut(s) 310, 423, 495
NsiI ATGCAT 1 cut(s) 693
PdmI GAANNNNTTC 1 cut(s) 536
PleI GAGTC 2 cut(s) 317, 502
PpsI GAGTC 2 cut(s) 317, 502
Psp6I CCWGG 1 cut(s) 256
PspFI CCCAGC 1 cut(s) 595
PspGI CCWGG 1 cut(s) 256
PspPI GGNCC 1 cut(s) 543
PstI CTGCAG 3 cut(s) 380, 612, 650
PstNI CAGNNNCTG 2 cut(s) 112, 433
PsuI RGATCY 2 cut(s) 400, 619
PvuII CAGCTG 1 cut(s) 375
RsaI GTAC 2 cut(s) 35, 76
RsaNI GTAC 2 cut(s) 34, 75
Sau3AI GATC 3 cut(s) 335, 400, 619
Sau96I GGNCC 1 cut(s) 543
SchI GAGTC 2 cut(s) 318, 503
ScrFI CCNGG 2 cut(s) 258, 324
SduI GDGCHC 1 cut(s) 8
SfaNI GCATC 3 cut(s) 564, 678, 734
SfcI CTRYAG 3 cut(s) 376, 608, 646
SinI GGWCC 1 cut(s) 543
SpeI ACTAGT 1 cut(s) 8
Sse9I AATT 1 cut(s) 15
SspMI CTAG 2 cut(s) 9, 329
StyD4I CCNGG 2 cut(s) 256, 322
StyI CCWWGG 1 cut(s) 328
TaaI ACNGT 2 cut(s) 33, 556
TaiI ACGT 1 cut(s) 425
TaqI TCGA 1 cut(s) 240
TasI AATT 1 cut(s) 15
TatI WGTACW 1 cut(s) 74
TauI GCSGC 7 cut(s) 278, 285, 348, 351, 473, 478, 522
TscAI CASTG 2 cut(s) 84, 358
TseFI GTSAC 3 cut(s) 310, 423, 495
TseI GCWGC 9 cut(s) 191, 204, 285, 375, 378, 381, 467, 522, 607
Tsp45I GTSAC 3 cut(s) 310, 423, 495
TspRI CASTG 2 cut(s) 84, 358
VpaK11BI GGWCC 1 cut(s) 543
XcmI CCANNNNNNNNNTGG 1 cut(s) 553
XmaJI CCTAGG 1 cut(s) 328
XmiI GTMKAC 1 cut(s) 165
XmnI GAANNNNTTC 1 cut(s) 536
XspI CTAG 2 cut(s) 9, 329
ZraI GACGTC 1 cut(s) 423
Zsp2I ATGCAT 1 cut(s) 693
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.