Rorug06G0409200

Zinc-finger homeodomain protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0016344
Physical Location & Seq
Reverse (-)
55174380 .. 55175600
1221 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0409200.1

Sequence Viewer

Length: 558 bp
ATGGGGGATCGCTGGAGATTCTTTAGAGTGTCTGGACCACGACCACCTCAGATTCCAAATGAGTACTTCACTATGGAGATACACCACGGAGGTTATTTCGACAAGATGCCGGATGGGACAAAGAAGTATAAAATAGCCAAGTTCAATAAGTTGGGTGGAGTCTTGTATTGTGATGCATTGGATCCTGAGAAGCTTGCATGGGTAGAGCTTAATAACATTGCATGGGAATTAGGGTACAGAGAGAAACCAATTTCCTATTGCTACAAGCTGCCGGGGACTTTAAGTTGTGAGGGATGGATTCCTTTGAAGAATGATGCCGATGTTTTCGAGATGACAAAGCAAATATCAAAGAAGAAGAGACAAATCAGCTTGTATATCACAGGCGGTGGTAGAAGGAAGAAAAAGGATGCTGAGTTGGATGATATAGTGCCAAGGCCCTCTAATTGGCATAATCCTTTGAATAATGTTCTGGCAGCAGAGAAAATAAACGTTGATGTGTCTGCTAATTTGGTGGCTAGCCATATAAATAGGTGTTGGATATATTTGTTTGCTCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ZF-HD_dimer

Protein Analysis

185

Amino Acids

21.38

Weight (kDa)

9.18

Isoelectric Point (pI)

38.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PB1-like PF26130 21 - 127 8.3e-14 PB1-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016344)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g17830
malus_domestica MD06G1234500.v1.1 MD14G1241400.v1.1
prunus_persica Prupe.5G239000_v2.0.a1
pyrus_communis pycom06g20920
rosa_chinensis RchiOBHm_Chr7g0177751
rosa_laevigata RLG00000005507
rosa_multiflora Rmu_sc0006214.1_g000016
rosa_roxburghii Rroxscaffold_3G00275590
rosa_rugosa Rorug06G0409200
rosa_samantha Rh7AG008700 Rh7BG008900 Rh7CG009100 Rh7DG008900
rosa_wichuraiana Rw7G000720

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 384
AclI AACGTT 1 cut(s) 489
AclWI GGATC 3 cut(s) 15, 176, 189
AfaI GTAC 2 cut(s) 65, 236
AfiI CCNNNNNNNGG 1 cut(s) 444
AgsI TTSAA 3 cut(s) 145, 307, 460
AluBI AGCT 4 cut(s) 193, 208, 268, 369
AluI AGCT 4 cut(s) 193, 208, 268, 369
Alw26I GTCTC 1 cut(s) 352
AlwI GGATC 3 cut(s) 15, 176, 189
AoxI GGCC 1 cut(s) 434
ApeKI GCWGC 2 cut(s) 268, 473
AspS9I GGNCC 2 cut(s) 35, 435
AsuC2I CCSGG 1 cut(s) 273
AsuNHI GCTAGC 1 cut(s) 515
AvaII GGWCC 1 cut(s) 35
BamHI GGATCC 1 cut(s) 181
BbvI GCAGC 2 cut(s) 255, 485
BccI CCATC 2 cut(s) 107, 288
BcnI CCSGG 1 cut(s) 273
BcoDI GTCTC 1 cut(s) 352
BfaI CTAG 1 cut(s) 516
BisI GCNGC 2 cut(s) 269, 474
BlsI GCNGC 2 cut(s) 270, 475
BmcAI AGTACT 1 cut(s) 65
Bme1390I CCNGG 1 cut(s) 273
Bme18I GGWCC 1 cut(s) 35
BmgT120I GGNCC 2 cut(s) 35, 435
BmiI GGNNCC 1 cut(s) 183
BmrFI CCNGG 1 cut(s) 273
BmsI GCATC 4 cut(s) 96, 163, 304, 397
BmtI GCTAGC 1 cut(s) 519
BpmI CTGGAG 1 cut(s) 34
BpuMI CCSGG 1 cut(s) 273
BsaJI CCNNGG 3 cut(s) 85, 272, 431
Bsc4I CCNNNNNNNGG 1 cut(s) 444
Bse3DI GCAATG 1 cut(s) 216
BseDI CCNNGG 3 cut(s) 85, 272, 431
BseGI GGATG 4 cut(s) 118, 299, 412, 424
BseLI CCNNNNNNNGG 1 cut(s) 444
BseMI GCAATG 1 cut(s) 216
BseMII CTCAG 3 cut(s) 62, 177, 402
BseXI GCAGC 2 cut(s) 255, 485
BshFI GGCC 1 cut(s) 436
BsiSI CCGG 2 cut(s) 110, 272
BslFI GGGAC 2 cut(s) 130, 289
BslI CCNNNNNNNGG 1 cut(s) 444
BsmAI GTCTC 1 cut(s) 352
BsmFI GGGAC 2 cut(s) 130, 289
BsnI GGCC 1 cut(s) 436
Bsp143I GATC 2 cut(s) 7, 181
BspACI CCGC 1 cut(s) 384
BspANI GGCC 1 cut(s) 436
BspCNI CTCAG 3 cut(s) 61, 178, 403
BspLI GGNNCC 1 cut(s) 183
BspOI GCTAGC 1 cut(s) 519
BspPI GGATC 3 cut(s) 15, 176, 189
BsrDI GCAATG 1 cut(s) 216
BssECI CCNNGG 3 cut(s) 85, 272, 431
BssMI GATC 2 cut(s) 7, 181
BssT1I CCWWGG 1 cut(s) 431
Bst6I CTCTTC 1 cut(s) 350
BstC8I GCNNGC 2 cut(s) 195, 517
BstDEI CTNAG 3 cut(s) 48, 186, 411
BstDSI CCRYGG 1 cut(s) 85
BstF5I GGATG 4 cut(s) 118, 299, 412, 424
BstKTI GATC 2 cut(s) 10, 184
BstMAI GTCTC 1 cut(s) 352
BstMBI GATC 2 cut(s) 7, 181
BstSCI CCNGG 1 cut(s) 271
BstV1I GCAGC 2 cut(s) 255, 485
BstX2I RGATCY 1 cut(s) 181
BstYI RGATCY 1 cut(s) 181
BsuRI GGCC 1 cut(s) 436
BtgI CCRYGG 1 cut(s) 85
BtsCI GGATG 4 cut(s) 118, 299, 412, 424
Cac8I GCNNGC 2 cut(s) 195, 517
Cfr13I GGNCC 2 cut(s) 35, 435
Csp6I GTAC 2 cut(s) 64, 235
CviAII CATG 2 cut(s) 198, 222
CviJI RGCY 8 cut(s) 137, 193, 208, 268, 369, 436, 515, 519
CviKI_1 RGCY 8 cut(s) 137, 193, 208, 268, 369, 436, 515, 519
CviQI GTAC 2 cut(s) 64, 235
DdeI CTNAG 3 cut(s) 48, 186, 411
DpnI GATC 2 cut(s) 9, 183
DpnII GATC 2 cut(s) 7, 181
Eam1104I CTCTTC 1 cut(s) 350
EarI CTCTTC 1 cut(s) 350
Eco130I CCWWGG 1 cut(s) 431
Eco47I GGWCC 1 cut(s) 35
EcoO109I RGGNCCY 1 cut(s) 435
EcoT14I CCWWGG 1 cut(s) 431
EcoT22I ATGCAT 1 cut(s) 178
ErhI CCWWGG 1 cut(s) 431
FaeI CATG 2 cut(s) 201, 225
FaqI GGGAC 2 cut(s) 130, 289
FatI CATG 2 cut(s) 197, 221
Fnu4HI GCNGC 2 cut(s) 269, 474
FokI GGATG 4 cut(s) 125, 306, 419, 431
Fsp4HI GCNGC 2 cut(s) 269, 474
FspBI CTAG 1 cut(s) 516
GluI GCNGC 2 cut(s) 269, 474
GsuI CTGGAG 1 cut(s) 34
HaeIII GGCC 1 cut(s) 436
HapII CCGG 2 cut(s) 110, 272
Hin1II CATG 2 cut(s) 201, 225
HindIII AAGCTT 1 cut(s) 191
HinfI GANTC 4 cut(s) 18, 52, 159, 298
HpaII CCGG 2 cut(s) 110, 272
Hpy188I TCNGA 1 cut(s) 51
Hpy188III TCNNGA 3 cut(s) 33, 185, 328
HpyAV CCTTC 1 cut(s) 387
HpyCH4IV ACGT 1 cut(s) 489
HpyCH4V TGCA 3 cut(s) 176, 197, 221
HpyF3I CTNAG 3 cut(s) 48, 186, 411
HpySE526I ACGT 1 cut(s) 489
Hsp92II CATG 2 cut(s) 201, 225
Kzo9I GATC 2 cut(s) 7, 181
LpnPI CCDG 6 cut(s) 18, 123, 198, 285, 366, 455
Lsp1109I GCAGC 2 cut(s) 255, 485
LweI GCATC 4 cut(s) 96, 163, 304, 397
MaeI CTAG 1 cut(s) 516
MaeII ACGT 1 cut(s) 489
MalI GATC 2 cut(s) 9, 183
MboI GATC 2 cut(s) 7, 181
MboII GAAGA 4 cut(s) 319, 364, 367, 409
MflI RGATCY 1 cut(s) 181
MluCI AATT 4 cut(s) 227, 249, 442, 505
MlyI GAGTC 1 cut(s) 168
MmeI TCCRAC 2 cut(s) 396, 515
MnlI CCTC 4 cut(s) 57, 83, 283, 448
Mph1103I ATGCAT 1 cut(s) 178
MseI TTAA 2 cut(s) 210, 281
MspI CCGG 2 cut(s) 110, 272
MspR9I CCNGG 1 cut(s) 273
NciI CCSGG 1 cut(s) 273
NdeII GATC 2 cut(s) 7, 181
NheI GCTAGC 1 cut(s) 515
NlaIII CATG 2 cut(s) 201, 225
NlaIV GGNNCC 1 cut(s) 183
NsiI ATGCAT 1 cut(s) 178
PfeI GAWTC 3 cut(s) 18, 52, 298
PkrI GCNGC 2 cut(s) 270, 475
PleI GAGTC 1 cut(s) 167
PpsI GAGTC 1 cut(s) 167
Psp1406I AACGTT 1 cut(s) 489
PspN4I GGNNCC 1 cut(s) 183
PspPI GGNCC 2 cut(s) 35, 435
PsuI RGATCY 1 cut(s) 181
RsaI GTAC 2 cut(s) 65, 236
RsaNI GTAC 2 cut(s) 64, 235
SaqAI TTAA 2 cut(s) 210, 281
SatI GCNGC 2 cut(s) 269, 474
Sau3AI GATC 2 cut(s) 7, 181
Sau96I GGNCC 2 cut(s) 35, 435
ScaI AGTACT 1 cut(s) 65
SchI GAGTC 1 cut(s) 168
ScrFI CCNGG 1 cut(s) 273
SetI ASST 8 cut(s) 49, 94, 195, 210, 270, 371, 492, 533
SfaNI GCATC 4 cut(s) 96, 163, 304, 397
SinI GGWCC 1 cut(s) 35
Sse9I AATT 4 cut(s) 227, 249, 442, 505
SsiI CCGC 1 cut(s) 384
SspMI CTAG 1 cut(s) 516
StyD4I CCNGG 1 cut(s) 271
StyI CCWWGG 1 cut(s) 431
TaiI ACGT 1 cut(s) 492
TaqI TCGA 2 cut(s) 99, 327
TasI AATT 4 cut(s) 227, 249, 442, 505
TatI WGTACW 1 cut(s) 63
TfiI GAWTC 3 cut(s) 18, 52, 298
Tru1I TTAA 2 cut(s) 210, 281
Tru9I TTAA 2 cut(s) 210, 281
TseI GCWGC 2 cut(s) 268, 473
TspGWI ACGGA 1 cut(s) 102
VpaK11BI GGWCC 1 cut(s) 35
XspI CTAG 1 cut(s) 516
ZrmI AGTACT 1 cut(s) 65
Zsp2I ATGCAT 1 cut(s) 178
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.