RLG00000005507

Zinc-finger homeodomain protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0016344
Physical Location & Seq
Reverse (-)
68150079 .. 68150708
630 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000005507

Sequence Viewer

Length: 630 bp
ATGGAGGGAGAGAACTCATCAAACGATGTATACAGAGAGTGCCTCAGAAACCATGCAGCCAGCCTCGGCAGCTATGCCACCGACGGGTGTGGAGAGTTTACACTCGACGACACCTCGTCCCCAGGCGGACTACAATGCGCCGCCTGCGGCTGCCACCGCAACTTCCACCGCCGAGTCACCTACGCACCCGGCGTAGGCAGATCATCCGGCGGCGGCACTGCTCATCATCGCGTCATCAGCTGCAGCAGCCGAGGAGGCCGAGGAGATCTTCACCACGAGATGATGACGTCACAGGAACTGATTGACTACAATGTCGGCGGTGGAGGGGGAGCAGTGGCGCGGCAGATGATGGTGGTGGAGTCACCGGACAGCGGGGACAGGAGCGGCAGCGGGAGGAAGCGGTTCAGGTCCAAGTTCACGGTGGAGCAGAAGGAGAAGATGCTGGCATTTGCGGAGAAGCTGGGGTGGAAGCTGCAGAGGAAAGATCTAGAAGATGAGATTGAGAGGTTCTGCAGAAGTATTGGGGTCAGCAGACAGGTTTTCAAAGTGTGGATGCATAACCACAAGAACCTCTCCTCTTCTTCTTCTGCATCAACAACTGCCAATGCCTCCTCTCTCACAACTCAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ZF-HD_dimer

Protein Analysis

210

Amino Acids

22.73

Weight (kDa)

8.71

Isoelectric Point (pI)

66.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ZF-HD_dimer PF04770 10 - 60 4.5e-24 ZF-HD protein dimerisation region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016344)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g17830
malus_domestica MD06G1234500.v1.1 MD14G1241400.v1.1
prunus_persica Prupe.5G239000_v2.0.a1
pyrus_communis pycom06g20920
rosa_chinensis RchiOBHm_Chr7g0177751
rosa_laevigata RLG00000005507
rosa_multiflora Rmu_sc0006214.1_g000016
rosa_roxburghii Rroxscaffold_3G00275590
rosa_rugosa Rorug06G0409200
rosa_samantha Rh7AG008700 Rh7BG008900 Rh7CG009100 Rh7DG008900
rosa_wichuraiana Rw7G000720

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 311
AatII GACGTC 1 cut(s) 290
AccBSI CCGCTC 1 cut(s) 384
AccI GTMKAC 1 cut(s) 30
AccII CGCG 2 cut(s) 231, 340
AcyI GRCGYC 1 cut(s) 287
AfiI CCNNNNNNNGG 3 cut(s) 84, 194, 371
AgsI TTSAA 1 cut(s) 544
AhdI GACNNNNNGTC 1 cut(s) 115
AjnI CCWGG 1 cut(s) 121
AluBI AGCT 4 cut(s) 72, 240, 460, 472
AluI AGCT 4 cut(s) 72, 240, 460, 472
AlwNI CAGNNNCTG 1 cut(s) 298
AoxI GGCC 1 cut(s) 256
ApeKI GCWGC 8 cut(s) 56, 69, 150, 240, 243, 246, 387, 472
Asp700I GAANNNNTTC 1 cut(s) 401
AspLEI GCGC 2 cut(s) 140, 340
AspS9I GGNCC 1 cut(s) 408
AsuC2I CCSGG 1 cut(s) 189
AsuHPI GGTGA 3 cut(s) 169, 263, 354
AvaII GGWCC 1 cut(s) 408
BauI CACGAG 1 cut(s) 275
BbvI GCAGC 8 cut(s) 68, 81, 137, 227, 255, 258, 399, 459
BccI CCATC 1 cut(s) 343
BciT130I CCWGG 1 cut(s) 123
BcnI CCSGG 1 cut(s) 189
BfaI CTAG 1 cut(s) 488
BfmI CTRYAG 3 cut(s) 241, 473, 511
BglI GCCNNNNNGGC 1 cut(s) 255
BglII AGATCT 2 cut(s) 265, 484
Bme1390I CCNGG 2 cut(s) 123, 189
Bme18I GGWCC 1 cut(s) 408
BmeRI GACNNNNNGTC 1 cut(s) 115
BmgT120I GGNCC 1 cut(s) 408
BmrFI CCNGG 2 cut(s) 123, 189
BmsI GCATC 3 cut(s) 429, 543, 599
BplI GAGNNNNNCTC 2 cut(s) 27, 59
BpuMI CCSGG 1 cut(s) 189
BsaHI GRCGYC 1 cut(s) 287
BsaJI CCNNGG 4 cut(s) 64, 121, 250, 259
BsaWI WCCGGW 1 cut(s) 364
Bsc4I CCNNNNNNNGG 3 cut(s) 84, 194, 371
BseBI CCWGG 1 cut(s) 123
BseDI CCNNGG 4 cut(s) 64, 121, 250, 259
BseGI GGATG 2 cut(s) 203, 558
BseLI CCNNNNNNNGG 3 cut(s) 84, 194, 371
BseMII CTCAG 1 cut(s) 58
BseRI GAGGAG 4 cut(s) 267, 276, 565, 601
BseXI GCAGC 8 cut(s) 68, 81, 137, 227, 255, 258, 399, 459
BseYI CCCAGC 1 cut(s) 460
Bsh1236I CGCG 2 cut(s) 231, 340
BshFI GGCC 1 cut(s) 258
BsiSI CCGG 3 cut(s) 189, 207, 365
BslFI GGGAC 2 cut(s) 103, 389
BslI CCNNNNNNNGG 3 cut(s) 84, 194, 371
BsmFI GGGAC 2 cut(s) 103, 389
BsnI GGCC 1 cut(s) 258
Bsp143I GATC 3 cut(s) 200, 265, 484
BspANI GGCC 1 cut(s) 258
BspCNI CTCAG 1 cut(s) 57
BspFNI CGCG 2 cut(s) 231, 340
BspMAI CTGCAG 3 cut(s) 245, 477, 515
BsrBI CCGCTC 1 cut(s) 384
BssECI CCNNGG 4 cut(s) 64, 121, 250, 259
BssMI GATC 3 cut(s) 200, 265, 484
BssNAI GTATAC 1 cut(s) 31
BssNI GRCGYC 1 cut(s) 287
BssSI CACGAG 1 cut(s) 275
Bst1107I GTATAC 1 cut(s) 31
Bst2BI CACGAG 1 cut(s) 275
Bst2UI CCWGG 1 cut(s) 123
Bst4CI ACNGT 1 cut(s) 421
Bst6I CTCTTC 1 cut(s) 583
BstACI GRCGYC 1 cut(s) 287
BstC8I GCNNGC 3 cut(s) 61, 145, 444
BstDEI CTNAG 2 cut(s) 44, 624
BstF5I GGATG 2 cut(s) 203, 558
BstFNI CGCG 2 cut(s) 231, 340
BstHHI GCGC 2 cut(s) 140, 340
BstKTI GATC 3 cut(s) 203, 268, 487
BstMBI GATC 3 cut(s) 200, 265, 484
BstMWI GCNNNNNNNGC 6 cut(s) 69, 144, 156, 237, 246, 255
BstNI CCWGG 1 cut(s) 123
BstSCI CCNGG 2 cut(s) 121, 187
BstSFI CTRYAG 3 cut(s) 241, 473, 511
BstUI CGCG 2 cut(s) 231, 340
BstV1I GCAGC 8 cut(s) 68, 81, 137, 227, 255, 258, 399, 459
BstX2I RGATCY 2 cut(s) 265, 484
BstYI RGATCY 2 cut(s) 265, 484
BstZ17I GTATAC 1 cut(s) 31
BsuRI GGCC 1 cut(s) 258
BtgZI GCGATG 1 cut(s) 212
BtsCI GGATG 2 cut(s) 203, 558
BtsI GCAGTG 2 cut(s) 216, 339
BtsIMutI CAGTG 2 cut(s) 216, 339
Cac8I GCNNGC 3 cut(s) 61, 145, 444
CaiI CAGNNNCTG 1 cut(s) 298
CfoI GCGC 2 cut(s) 140, 340
Cfr13I GGNCC 1 cut(s) 408
CseI GACGC 1 cut(s) 220
CviAII CATG 1 cut(s) 53
CviJI RGCY 9 cut(s) 59, 63, 72, 150, 240, 249, 258, 460, 472
CviKI_1 RGCY 9 cut(s) 59, 63, 72, 150, 240, 249, 258, 460, 472
DdeI CTNAG 2 cut(s) 44, 624
DpnI GATC 3 cut(s) 202, 267, 486
DpnII GATC 3 cut(s) 200, 265, 484
DrdI GACNNNNNNGTC 1 cut(s) 311
DriI GACNNNNNGTC 1 cut(s) 115
DseDI GACNNNNNNGTC 1 cut(s) 311
Eam1104I CTCTTC 1 cut(s) 583
Eam1105I GACNNNNNGTC 1 cut(s) 115
EarI CTCTTC 1 cut(s) 583
EciI GGCGGA 1 cut(s) 141
Eco47I GGWCC 1 cut(s) 408
EcoRII CCWGG 1 cut(s) 121
EcoT22I ATGCAT 1 cut(s) 558
FaeI CATG 1 cut(s) 56
FaiI YATR 4 cut(s) 31, 54, 75, 558
FaqI GGGAC 2 cut(s) 103, 389
FatI CATG 1 cut(s) 52
FauI CCCGC 2 cut(s) 365, 383
FblI GTMKAC 1 cut(s) 30
FokI GGATG 2 cut(s) 190, 565
FspBI CTAG 1 cut(s) 488
GlaI GCGC 2 cut(s) 139, 339
GsaI CCCAGC 1 cut(s) 464
HaeIII GGCC 1 cut(s) 258
HapII CCGG 3 cut(s) 189, 207, 365
HgaI GACGC 1 cut(s) 220
HhaI GCGC 2 cut(s) 140, 340
Hin1I GRCGYC 1 cut(s) 287
Hin1II CATG 1 cut(s) 56
Hin6I GCGC 2 cut(s) 138, 338
HinP1I GCGC 2 cut(s) 138, 338
HinfI GANTC 2 cut(s) 174, 359
HpaII CCGG 3 cut(s) 189, 207, 365
HphI GGTGA 3 cut(s) 169, 263, 354
Hpy166II GTNNAC 3 cut(s) 31, 99, 417
Hpy188I TCNGA 1 cut(s) 47
Hpy188III TCNNGA 1 cut(s) 488
Hpy8I GTNNAC 3 cut(s) 31, 99, 417
Hpy99I CGWCG 2 cut(s) 86, 110
HpyAV CCTTC 1 cut(s) 424
HpyCH4III ACNGT 1 cut(s) 421
HpyCH4IV ACGT 1 cut(s) 287
HpyCH4V TGCA 6 cut(s) 56, 243, 475, 513, 556, 590
HpyF10VI GCNNNNNNNGC 6 cut(s) 69, 144, 156, 237, 246, 255
HpyF3I CTNAG 2 cut(s) 44, 624
HpySE526I ACGT 1 cut(s) 287
Hsp92I GRCGYC 1 cut(s) 287
Hsp92II CATG 1 cut(s) 56
HspAI GCGC 2 cut(s) 138, 338
Kzo9I GATC 3 cut(s) 200, 265, 484
LmnI GCTCC 3 cut(s) 329, 381, 424
Lsp1109I GCAGC 8 cut(s) 68, 81, 137, 227, 255, 258, 399, 459
LweI GCATC 3 cut(s) 429, 543, 599
MaeI CTAG 1 cut(s) 488
MaeII ACGT 1 cut(s) 287
MaeIII GTNAC 3 cut(s) 175, 288, 360
MalI GATC 3 cut(s) 202, 267, 486
MbiI CCGCTC 1 cut(s) 384
MboI GATC 3 cut(s) 200, 265, 484
MboII GAAGA 6 cut(s) 260, 448, 503, 570, 573, 576
MflI RGATCY 2 cut(s) 265, 484
MlyI GAGTC 2 cut(s) 183, 368
Mph1103I ATGCAT 1 cut(s) 558
MroXI GAANNNNTTC 1 cut(s) 401
MspA1I CMGCKG 3 cut(s) 240, 372, 390
MspI CCGG 3 cut(s) 189, 207, 365
MspR9I CCNGG 2 cut(s) 123, 189
MvaI CCWGG 1 cut(s) 123
MvnI CGCG 2 cut(s) 231, 340
MwoI GCNNNNNNNGC 6 cut(s) 69, 144, 156, 237, 246, 255
NciI CCSGG 1 cut(s) 189
NdeII GATC 3 cut(s) 200, 265, 484
NlaIII CATG 1 cut(s) 56
NmeAIII GCCGAG 4 cut(s) 45, 197, 275, 284
NmuCI GTSAC 3 cut(s) 175, 288, 360
NsiI ATGCAT 1 cut(s) 558
PcsI WCGNNNNNNNCGW 1 cut(s) 189
PdmI GAANNNNTTC 1 cut(s) 401
PleI GAGTC 2 cut(s) 182, 367
PpsI GAGTC 2 cut(s) 182, 367
Psp6I CCWGG 1 cut(s) 121
PspFI CCCAGC 1 cut(s) 460
PspGI CCWGG 1 cut(s) 121
PspPI GGNCC 1 cut(s) 408
PstI CTGCAG 3 cut(s) 245, 477, 515
PstNI CAGNNNCTG 1 cut(s) 298
PsuI RGATCY 2 cut(s) 265, 484
PvuII CAGCTG 1 cut(s) 240
Sau3AI GATC 3 cut(s) 200, 265, 484
Sau96I GGNCC 1 cut(s) 408
SchI GAGTC 2 cut(s) 183, 368
ScrFI CCNGG 2 cut(s) 123, 189
SfaNI GCATC 3 cut(s) 429, 543, 599
SfcI CTRYAG 3 cut(s) 241, 473, 511
SinI GGWCC 1 cut(s) 408
SspMI CTAG 1 cut(s) 488
StyD4I CCNGG 2 cut(s) 121, 187
TaaI ACNGT 1 cut(s) 421
TaiI ACGT 1 cut(s) 290
TaqI TCGA 1 cut(s) 105
TauI GCSGC 6 cut(s) 143, 150, 213, 216, 343, 387
TscAI CASTG 2 cut(s) 223, 339
TseFI GTSAC 3 cut(s) 175, 288, 360
TseI GCWGC 8 cut(s) 56, 69, 150, 240, 243, 246, 387, 472
Tsp45I GTSAC 3 cut(s) 175, 288, 360
TspRI CASTG 2 cut(s) 223, 339
VpaK11BI GGWCC 1 cut(s) 408
XbaI TCTAGA 1 cut(s) 487
XcmI CCANNNNNNNNNTGG 1 cut(s) 418
XmiI GTMKAC 1 cut(s) 30
XmnI GAANNNNTTC 1 cut(s) 401
XspI CTAG 1 cut(s) 488
ZraI GACGTC 1 cut(s) 288
Zsp2I ATGCAT 1 cut(s) 558
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.