Prupe.5G239000_v2.0.a1

Zinc-finger homeodomain protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
OG0016344
Physical Location & Seq
Reverse (-)
18041295 .. 18042349
1055 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G239000.1

Sequence Viewer

Length: 624 bp
ATGGAAGAAGATCATCATGATCAGAACACAAATGAAGTATACAGAGAGTGCTTGAGGAACCATGCAGCGAGCCTTGGCAGCTACGCCACAGACGGCTGCGGAGAGTTCACACTCGACGACGCATCCCCAGGTGGCCTACAATGCGCCGCCTGCGGATGCCACCGAAACTTCCACCGCAGAGTCACCTATGCAGCCACGTCATCACAAGCTGCAGGAGGCAGCGGCAGATCATCAGGTCATCATCATCATCATCATAATCGTGTGATCATGAGCAGCAGCAGCCGAGGCCGAGATCCGAGCGACAACACTATAGCAACACAAGATCAACTCATGGATTACAATGCTGGCGGTGGTGGGTCCCCGGACAGTGGAGACAGGATGAGCGGGAAGAAGCGGTTCAGGACAAAGTTCACGGCGGAACAGAAGGAGAAGATGCTGGCGTTTGCAGAGAAGCTGGGGTGGAAGCTGCAGAGGAAGGATCTAGAAGATGAGATTGAGAGGTTCTGCAGGAGTATAGGGGTAAGCAGACAGGTATTCAAGGTGTGGATGCATAACCACAAGAACCTTTCCTCATCTTCTACTTCTGCATCTACTGGCAATGCCTCTTCTCTCACTACCCAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ZF-HD_dimer

Protein Analysis

208

Amino Acids

22.76

Weight (kDa)

8.24

Isoelectric Point (pI)

66.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016344)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g17830
malus_domestica MD06G1234500.v1.1 MD14G1241400.v1.1
prunus_persica Prupe.5G239000_v2.0.a1
pyrus_communis pycom06g20920
rosa_chinensis RchiOBHm_Chr7g0177751
rosa_laevigata RLG00000005507
rosa_multiflora Rmu_sc0006214.1_g000016
rosa_roxburghii Rroxscaffold_3G00275590
rosa_rugosa Rorug06G0409200
rosa_samantha Rh7AG008700 Rh7BG008900 Rh7CG009100 Rh7DG008900
rosa_wichuraiana Rw7G000720

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 384
AccI GTMKAC 1 cut(s) 39
AciI CCGC 9 cut(s) 99, 147, 153, 175, 222, 348, 384, 394, 416
AclWI GGATC 2 cut(s) 287, 486
AfiI CCNNNNNNNGG 1 cut(s) 368
AgsI TTSAA 1 cut(s) 538
AjiI CACGTC 1 cut(s) 198
AjnI CCWGG 1 cut(s) 127
AluBI AGCT 4 cut(s) 81, 209, 454, 466
AluI AGCT 4 cut(s) 81, 209, 454, 466
Alw26I GTCTC 1 cut(s) 366
AlwI GGATC 2 cut(s) 287, 486
AoxI GGCC 2 cut(s) 133, 286
Asp700I GAANNNNTTC 1 cut(s) 395
AspLEI GCGC 1 cut(s) 146
AspS9I GGNCC 1 cut(s) 357
AsuC2I CCSGG 1 cut(s) 362
AsuHPI GGTGA 1 cut(s) 175
AvaII GGWCC 1 cut(s) 357
BceAI ACGGC 2 cut(s) 109, 429
BciT130I CCWGG 1 cut(s) 129
BclI TGATCA 2 cut(s) 19, 264
BcnI CCSGG 1 cut(s) 362
BcoDI GTCTC 1 cut(s) 366
BfaI CTAG 1 cut(s) 482
BfmI CTRYAG 4 cut(s) 210, 309, 467, 505
Bme1390I CCNGG 2 cut(s) 129, 362
Bme18I GGWCC 1 cut(s) 357
BmgBI CACGTC 1 cut(s) 198
BmgT120I GGNCC 1 cut(s) 357
BmiI GGNNCC 3 cut(s) 59, 358, 359
BmrFI CCNGG 2 cut(s) 129, 362
BmrI ACTGGG 1 cut(s) 613
BmsI GCATC 5 cut(s) 131, 146, 423, 537, 596
BmuI ACTGGG 1 cut(s) 613
BpuEI CTTGAG 1 cut(s) 73
BpuMI CCSGG 1 cut(s) 362
BsaJI CCNNGG 4 cut(s) 73, 127, 283, 360
Bsc4I CCNNNNNNNGG 1 cut(s) 368
Bse1I ACTGG 2 cut(s) 598, 619
Bse3DI GCAATG 1 cut(s) 604
BseBI CCWGG 1 cut(s) 129
BseDI CCNNGG 4 cut(s) 73, 127, 283, 360
BseGI GGATG 4 cut(s) 122, 161, 384, 552
BseLI CCNNNNNNNGG 1 cut(s) 368
BseMI GCAATG 1 cut(s) 604
BseNI ACTGG 2 cut(s) 598, 619
BseYI CCCAGC 1 cut(s) 454
BshFI GGCC 2 cut(s) 135, 288
BsiSI CCGG 1 cut(s) 362
BslFI GGGAC 1 cut(s) 343
BslI CCNNNNNNNGG 1 cut(s) 368
BsmAI GTCTC 1 cut(s) 366
BsmFI GGGAC 1 cut(s) 343
BsnI GGCC 2 cut(s) 135, 288
Bsp143I GATC 7 cut(s) 10, 19, 227, 264, 292, 322, 478
BspACI CCGC 9 cut(s) 99, 147, 153, 175, 222, 348, 384, 394, 416
BspANI GGCC 2 cut(s) 135, 288
BspHI TCATGA 2 cut(s) 16, 267
BspLI GGNNCC 3 cut(s) 59, 358, 359
BspMAI CTGCAG 3 cut(s) 214, 471, 509
BspPI GGATC 2 cut(s) 287, 486
BsrBI CCGCTC 1 cut(s) 384
BsrDI GCAATG 1 cut(s) 604
BsrI ACTGG 2 cut(s) 598, 619
BssECI CCNNGG 4 cut(s) 73, 127, 283, 360
BssMI GATC 7 cut(s) 10, 19, 227, 264, 292, 322, 478
BssNAI GTATAC 1 cut(s) 40
BssT1I CCWWGG 1 cut(s) 73
Bst1107I GTATAC 1 cut(s) 40
Bst2UI CCWGG 1 cut(s) 129
Bst4CI ACNGT 1 cut(s) 368
Bst6I CTCTTC 1 cut(s) 610
BstC8I GCNNGC 4 cut(s) 70, 151, 346, 438
BstF5I GGATG 4 cut(s) 122, 161, 384, 552
BstHHI GCGC 1 cut(s) 146
BstKTI GATC 7 cut(s) 13, 22, 230, 267, 295, 325, 481
BstMAI GTCTC 1 cut(s) 366
BstMBI GATC 7 cut(s) 10, 19, 227, 264, 292, 322, 478
BstMWI GCNNNNNNNGC 5 cut(s) 78, 141, 150, 279, 285
BstNI CCWGG 1 cut(s) 129
BstSCI CCNGG 2 cut(s) 127, 360
BstSFI CTRYAG 4 cut(s) 210, 309, 467, 505
BstX2I RGATCY 2 cut(s) 292, 478
BstYI RGATCY 2 cut(s) 292, 478
BstZ17I GTATAC 1 cut(s) 40
BsuRI GGCC 2 cut(s) 135, 288
BtrI CACGTC 1 cut(s) 198
BtsCI GGATG 4 cut(s) 122, 161, 384, 552
BtsIMutI CAGTG 1 cut(s) 373
Cac8I GCNNGC 4 cut(s) 70, 151, 346, 438
CciI TCATGA 2 cut(s) 16, 267
CfoI GCGC 1 cut(s) 146
Cfr13I GGNCC 1 cut(s) 357
CseI GACGC 1 cut(s) 128
CviAII CATG 4 cut(s) 17, 62, 268, 331
DpnI GATC 7 cut(s) 12, 21, 229, 266, 294, 324, 480
DpnII GATC 7 cut(s) 10, 19, 227, 264, 292, 322, 478
Eam1104I CTCTTC 1 cut(s) 610
EarI CTCTTC 1 cut(s) 610
EciI GGCGGA 1 cut(s) 431
Eco130I CCWWGG 1 cut(s) 73
Eco47I GGWCC 1 cut(s) 357
EcoO109I RGGNCCY 1 cut(s) 357
EcoRII CCWGG 1 cut(s) 127
EcoT14I CCWWGG 1 cut(s) 73
EcoT22I ATGCAT 1 cut(s) 552
ErhI CCWWGG 1 cut(s) 73
FaeI CATG 4 cut(s) 20, 65, 271, 334
FaqI GGGAC 1 cut(s) 343
FatI CATG 4 cut(s) 16, 61, 267, 330
FauI CCCGC 1 cut(s) 377
FbaI TGATCA 2 cut(s) 19, 264
FblI GTMKAC 1 cut(s) 39
FokI GGATG 4 cut(s) 109, 168, 391, 559
FspBI CTAG 1 cut(s) 482
GlaI GCGC 1 cut(s) 145
GsaI CCCAGC 1 cut(s) 458
HaeIII GGCC 2 cut(s) 135, 288
HapII CCGG 1 cut(s) 362
HgaI GACGC 1 cut(s) 128
HhaI GCGC 1 cut(s) 146
Hin1II CATG 4 cut(s) 20, 65, 271, 334
Hin6I GCGC 1 cut(s) 144
HinP1I GCGC 1 cut(s) 144
HinfI GANTC 1 cut(s) 180
HpaII CCGG 1 cut(s) 362
HphI GGTGA 1 cut(s) 175
Hpy166II GTNNAC 3 cut(s) 40, 108, 411
Hpy188I TCNGA 2 cut(s) 24, 297
Hpy188III TCNNGA 4 cut(s) 17, 268, 400, 482
Hpy8I GTNNAC 3 cut(s) 40, 108, 411
Hpy99I CGWCG 2 cut(s) 119, 122
HpyAV CCTTC 2 cut(s) 418, 469
HpyCH4III ACNGT 1 cut(s) 368
HpyCH4IV ACGT 1 cut(s) 197
HpyCH4V TGCA 8 cut(s) 65, 191, 212, 446, 469, 507, 550, 587
HpyF10VI GCNNNNNNNGC 5 cut(s) 78, 141, 150, 279, 285
HpySE526I ACGT 1 cut(s) 197
Hsp92II CATG 4 cut(s) 20, 65, 271, 334
HspAI GCGC 1 cut(s) 144
KflI GGGWCCC 1 cut(s) 357
Ksp22I TGATCA 2 cut(s) 19, 264
Kzo9I GATC 7 cut(s) 10, 19, 227, 264, 292, 322, 478
LweI GCATC 5 cut(s) 131, 146, 423, 537, 596
MaeI CTAG 1 cut(s) 482
MaeII ACGT 1 cut(s) 197
MaeIII GTNAC 1 cut(s) 181
MalI GATC 7 cut(s) 12, 21, 229, 266, 294, 324, 480
MbiI CCGCTC 1 cut(s) 384
MboI GATC 7 cut(s) 10, 19, 227, 264, 292, 322, 478
MboII GAAGA 7 cut(s) 17, 20, 400, 442, 497, 567, 597
MflI RGATCY 2 cut(s) 292, 478
MlyI GAGTC 1 cut(s) 189
MnlI CCTC 7 cut(s) 48, 209, 278, 465, 492, 580, 613
Mph1103I ATGCAT 1 cut(s) 552
MroXI GAANNNNTTC 1 cut(s) 395
MslI CAYNNNNRTG 1 cut(s) 258
MspA1I CMGCKG 1 cut(s) 222
MspI CCGG 1 cut(s) 362
MspR9I CCNGG 2 cut(s) 129, 362
MvaI CCWGG 1 cut(s) 129
MwoI GCNNNNNNNGC 5 cut(s) 78, 141, 150, 279, 285
NciI CCSGG 1 cut(s) 362
NdeII GATC 7 cut(s) 10, 19, 227, 264, 292, 322, 478
NlaIII CATG 4 cut(s) 20, 65, 271, 334
NlaIV GGNNCC 3 cut(s) 59, 358, 359
NmeAIII GCCGAG 2 cut(s) 308, 314
NmuCI GTSAC 1 cut(s) 181
NsiI ATGCAT 1 cut(s) 552
PagI TCATGA 2 cut(s) 16, 267
PdmI GAANNNNTTC 1 cut(s) 395
PleI GAGTC 1 cut(s) 188
PpsI GAGTC 1 cut(s) 188
PpuMI RGGWCCY 1 cut(s) 357
Psp5II RGGWCCY 1 cut(s) 357
Psp6I CCWGG 1 cut(s) 127
PspFI CCCAGC 1 cut(s) 454
PspGI CCWGG 1 cut(s) 127
PspN4I GGNNCC 3 cut(s) 59, 358, 359
PspPI GGNCC 1 cut(s) 357
PspPPI RGGWCCY 1 cut(s) 357
PstI CTGCAG 3 cut(s) 214, 471, 509
PsuI RGATCY 2 cut(s) 292, 478
RseI CAYNNNNRTG 1 cut(s) 258
Sau3AI GATC 7 cut(s) 10, 19, 227, 264, 292, 322, 478
Sau96I GGNCC 1 cut(s) 357
SchI GAGTC 1 cut(s) 189
ScrFI CCNGG 2 cut(s) 129, 362
SfaNI GCATC 5 cut(s) 131, 146, 423, 537, 596
SfcI CTRYAG 4 cut(s) 210, 309, 467, 505
SinI GGWCC 1 cut(s) 357
SmiMI CAYNNNNRTG 1 cut(s) 258
SmlI CTYRAG 1 cut(s) 52
SmoI CTYRAG 1 cut(s) 52
SsiI CCGC 9 cut(s) 99, 147, 153, 175, 222, 348, 384, 394, 416
SspMI CTAG 1 cut(s) 482
StyD4I CCNGG 2 cut(s) 127, 360
StyI CCWWGG 1 cut(s) 73
TaaI ACNGT 1 cut(s) 368
TaiI ACGT 1 cut(s) 200
TaqI TCGA 1 cut(s) 114
TauI GCSGC 2 cut(s) 149, 225
TscAI CASTG 1 cut(s) 373
TseFI GTSAC 1 cut(s) 181
Tsp45I GTSAC 1 cut(s) 181
TspDTI ATGAA 1 cut(s) 48
TspRI CASTG 1 cut(s) 373
VpaK11BI GGWCC 1 cut(s) 357
XbaI TCTAGA 1 cut(s) 481
XmiI GTMKAC 1 cut(s) 39
XmnI GAANNNNTTC 1 cut(s) 395
XspI CTAG 1 cut(s) 482
Zsp2I ATGCAT 1 cut(s) 552
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.