FvH4_5g19150

Catalyzes the formation of phosphatidylethanolamine (PtdEtn) from phosphatidylserine (PtdSer). Plays a central role in phospholipid metabolism and in the interorganelle trafficking of phosphatidylserine

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
Physical Location & Seq
Reverse (-)
11046360 .. 11050623
4264 bp
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UTR
Exon/CDS
Intron
FvH4_5g19150.t1

Sequence Viewer

Length: 1338 bp
ATGAAATTTAGGGCTGTACATGGAGTCCCCATATTCTCTCCCTCCACGCACCTCAATCACCTCCATAACCAGCGTCGCTGCTTCACTTCGCTTCTCAAGAAACTCCAAAAGACCACTCAGGTTCGCGCTTCCCTCAACAGCGCAAGTGGCAGTTCCAAAGGAAATGGTGATTGGTTTCTGTTGCCGGGCGCAACGGTGGCTACATTACTGATGCTGGGTGTTCTACACGGCCGGCGGATGTATGAGGACATGAAGGTCGGGGAGGCGCATGAGAAGGGAATTGAATTTGAGTTCCAGCCTGATGCAAAATCTGCATTCTTAAGGTTACTGCCTCTGCGCTCCATTTCAAGATGTTGGGGGGTGTTGACAAGTGTGGAAATTCCAGTCTCACTGCGTTCACGTGTTTATGGAGCCTGGGCTCGGGCATTCCATTCAAACTTAGAAGAAGCAGCTCTGCCTCTGGAAGAATATGCAACATTACAAGATTTCTTTGTACGCACCTTGAAAGAAGGTTCCAGGCCTATTGACCCTGATCCCCAATGTCTGGTTAGTCCTGTTGATGGTACTGTACTAAGATTTGGGGAGATTAAAGGAGCAGGTGCCATGATTGAGCAAGTCAAAGGGTTCTCTTATTCAGTCTTTTCTCTTCTTGGTGCAACCTCGTTTCTTCCTACGATAGCTAAAGGAGACATGCAAGATGAGAGTAGTGAACCAGAAAATGTTTCTGGGGAGAAGAGTAGGAAATCATGGTGGAGCATATCATTTGCATCTCCGAAAGTTTGGAACCCTTACTCATCACGTCCCATGAAAGGCCTTTTTTACTGTGTAATTTACTTGAAGCCCGGAGACTATCATCGTGTACATGCACCTGCTGATTGGAATATTCTTGCCCGCCGGCATTTTTCTGGTCGTCTATATCCTGTAAATGAACGTGCAACCAGAACAATCAGGAATCTTTACGTTGAGAATGAACGGGTTGTTCTGGAAGGTCTATGGCAAGAAGGATTTATGGCACTTGCTGCTGTTGGTGCAACAAATATTGGATCAATTGAGCTTTCAATTGAACCTGAACTTCGGACAAACCAGGCAAAAAAGAAGTTCCTGCACTCCGAGCGTCCAGAAGAACGGTTGTATGAACCTGATGGTGTTGGTAGGACGCTCAAGAAAGGCGATGAGGTAGCTGCATTCAACATGGGGTCAACGGTTGTGCTTGTTTTCCAGGCACCCTTATCACGTTCACCAGAAAATGGGGAGTCCTCATCAGATTTCAAGTTTTTGGTCCAACGTGGGGATAGAGTCCGTGCAGGAGAAGCCCTAGGGAGGTGCCAAGATGAGTAA

Protein Analysis

446

Amino Acids

49.78

Weight (kDa)

9.04

Isoelectric Point (pI)

45.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PS_Dcarbxylase PF02666 160 - 440 4.3e-53 Phosphatidylserine decarboxylase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0013544)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 587, 877
AasI GACNNNNNNGTC 1 cut(s) 254
Acc36I ACCTGC 2 cut(s) 587, 877
AccB1I GGYRCC 3 cut(s) 599, 1222, 1323
AccB7I CCANNNNNTGG 2 cut(s) 544, 1247
AccII CGCG 1 cut(s) 126
AciI CCGC 2 cut(s) 235, 892
AclWI GGATC 2 cut(s) 527, 1051
AcoI YGGCCR 1 cut(s) 229
AcsI RAATTY 3 cut(s) 5, 284, 378
AcvI CACGTG 1 cut(s) 401
AfaI GTAC 5 cut(s) 18, 495, 565, 570, 861
AfiI CCNNNNNNNGG 7 cut(s) 420, 544, 560, 809, 1247, 1288, 1320
AflII CTTAAG 1 cut(s) 319
AflIII ACRYGT 1 cut(s) 400
AgsI TTSAA 9 cut(s) 284, 348, 435, 505, 838, 1059, 1064, 1189, 1270
AjiI CACGTC 1 cut(s) 800
AjnI CCWGG 4 cut(s) 413, 515, 1083, 1218
AjuI GAANNNNNNNTTGG 2 cut(s) 154, 186
AluBI AGCT 4 cut(s) 452, 680, 1054, 1181
AluI AGCT 4 cut(s) 452, 680, 1054, 1181
Alw26I GTCTC 3 cut(s) 391, 681, 840
AlwI GGATC 2 cut(s) 527, 1051
Ama87I CYCGRG 1 cut(s) 420
AoxI GGCC 3 cut(s) 229, 518, 811
ApeKI GCWGC 4 cut(s) 78, 449, 1019, 1181
ApoI RAATTY 3 cut(s) 5, 284, 378
AspA2I CCTAGG 1 cut(s) 1315
AspLEI GCGC 5 cut(s) 128, 143, 191, 268, 339
AspS9I GGNCC 1 cut(s) 1279
AsuC2I CCSGG 2 cut(s) 186, 843
AsuHPI GGTGA 3 cut(s) 50, 179, 1230
AvaI CYCGRG 1 cut(s) 420
AvaII GGWCC 1 cut(s) 1279
AvrII CCTAGG 1 cut(s) 1315
BanI GGYRCC 3 cut(s) 599, 1222, 1323
BanII GRGCYC 1 cut(s) 421
BbrPI CACGTG 1 cut(s) 401
BbvI GCAGC 4 cut(s) 65, 461, 1006, 1168
BccI CCATC 2 cut(s) 554, 1136
BceAI ACGGC 1 cut(s) 244
BciT130I CCWGG 4 cut(s) 415, 517, 1085, 1220
BcnI CCSGG 2 cut(s) 186, 843
BcoDI GTCTC 3 cut(s) 391, 681, 840
BfaI CTAG 1 cut(s) 1316
BfrI CTTAAG 1 cut(s) 319
BfuAI ACCTGC 2 cut(s) 587, 877
BisI GCNGC 4 cut(s) 79, 450, 1020, 1182
BlnI CCTAGG 1 cut(s) 1315
BlsI GCNGC 4 cut(s) 80, 451, 1021, 1183
Bme1390I CCNGG 6 cut(s) 186, 415, 517, 843, 1085, 1220
Bme18I GGWCC 1 cut(s) 1279
BmeT110I CYCGRG 1 cut(s) 420
BmgBI CACGTC 1 cut(s) 800
BmgT120I GGNCC 1 cut(s) 1279
BmiI GGNNCC 6 cut(s) 412, 514, 601, 785, 1224, 1325
BmrFI CCNGG 6 cut(s) 186, 415, 517, 843, 1085, 1220
BmsI GCATC 3 cut(s) 201, 292, 776
BpuEI CTTGAG 2 cut(s) 80, 1145
BpuMI CCSGG 2 cut(s) 186, 843
BsaAI YACGTR 1 cut(s) 401
BsaJI CCNNGG 2 cut(s) 414, 1315
Bsc4I CCNNNNNNNGG 7 cut(s) 420, 544, 560, 809, 1247, 1288, 1320
Bse118I RCCGGY 2 cut(s) 231, 894
Bse1I ACTGG 1 cut(s) 383
BseBI CCWGG 4 cut(s) 415, 517, 1085, 1220
BseDI CCNNGG 2 cut(s) 414, 1315
BseGI GGATG 1 cut(s) 243
BseLI CCNNNNNNNGG 7 cut(s) 420, 544, 560, 809, 1247, 1288, 1320
BseMII CTCAG 1 cut(s) 131
BseNI ACTGG 1 cut(s) 383
BseX3I CGGCCG 1 cut(s) 229
BseXI GCAGC 4 cut(s) 65, 461, 1006, 1168
BseYI CCCAGC 1 cut(s) 214
BsgI GTGCAG 2 cut(s) 1088, 1323
Bsh1236I CGCG 1 cut(s) 126
Bsh1285I CGRYCG 1 cut(s) 232
BshFI GGCC 3 cut(s) 231, 520, 813
BshNI GGYRCC 3 cut(s) 599, 1222, 1323
BsiEI CGRYCG 1 cut(s) 232
BsiHKCI CYCGRG 1 cut(s) 420
BsiSI CCGG 4 cut(s) 185, 232, 843, 895
BslFI GGGAC 2 cut(s) 11, 786
BslI CCNNNNNNNGG 7 cut(s) 420, 544, 560, 809, 1247, 1288, 1320
BsmAI GTCTC 3 cut(s) 391, 681, 840
BsmFI GGGAC 2 cut(s) 11, 786
BsmI GAATGC 3 cut(s) 314, 425, 1184
BsnI GGCC 3 cut(s) 231, 520, 813
BsoBI CYCGRG 1 cut(s) 420
Bsp1286I GDGCHC 1 cut(s) 421
Bsp1407I TGTACA 2 cut(s) 16, 859
Bsp143I GATC 2 cut(s) 532, 1043
BspACI CCGC 2 cut(s) 235, 892
BspANI GGCC 3 cut(s) 231, 520, 813
BspCNI CTCAG 1 cut(s) 130
BspFNI CGCG 1 cut(s) 126
BspLI GGNNCC 6 cut(s) 412, 514, 601, 785, 1224, 1325
BspMI ACCTGC 2 cut(s) 587, 877
BspPI GGATC 2 cut(s) 527, 1051
BspT107I GGYRCC 3 cut(s) 599, 1222, 1323
BspTI CTTAAG 1 cut(s) 319
BsrFI RCCGGY 2 cut(s) 231, 894
BsrGI TGTACA 2 cut(s) 16, 859
BsrI ACTGG 1 cut(s) 383
BssAI RCCGGY 2 cut(s) 231, 894
BssECI CCNNGG 2 cut(s) 414, 1315
BssMI GATC 2 cut(s) 532, 1043
BssT1I CCWWGG 1 cut(s) 1315
Bst2UI CCWGG 4 cut(s) 415, 517, 1085, 1220
Bst4CI ACNGT 5 cut(s) 196, 568, 824, 1128, 1204
Bst6I CTCTTC 2 cut(s) 651, 728
BstAFI CTTAAG 1 cut(s) 319
BstAPI GCANNNNNTGC 2 cut(s) 311, 1019
BstAUI TGTACA 2 cut(s) 16, 859
BstBAI YACGTR 1 cut(s) 401
BstC8I GCNNGC 3 cut(s) 233, 892, 896
BstDEI CTNAG 3 cut(s) 117, 439, 572
BstF5I GGATG 1 cut(s) 243
BstFNI CGCG 1 cut(s) 126
BstHHI GCGC 5 cut(s) 128, 143, 191, 268, 339
BstKTI GATC 2 cut(s) 535, 1046
BstMAI GTCTC 3 cut(s) 391, 681, 840
BstMBI GATC 2 cut(s) 532, 1043
BstMCI CGRYCG 1 cut(s) 232
BstMWI GCNNNNNNNGC 7 cut(s) 147, 197, 311, 1019, 1028, 1111, 1310
BstNI CCWGG 4 cut(s) 415, 517, 1085, 1220
BstNSI RCATGY 2 cut(s) 694, 866
BstSCI CCNGG 6 cut(s) 184, 413, 515, 841, 1083, 1218
BstUI CGCG 1 cut(s) 126
BstV1I GCAGC 4 cut(s) 65, 461, 1006, 1168
BstZI CGGCCG 1 cut(s) 229
BsuRI GGCC 3 cut(s) 231, 520, 813
BtgZI GCGATG 1 cut(s) 1185
BtrI CACGTC 1 cut(s) 800
BtsCI GGATG 1 cut(s) 243
BtsI GCAGTG 1 cut(s) 389
BtsIMutI CAGTG 1 cut(s) 389
BveI ACCTGC 2 cut(s) 587, 877
Cac8I GCNNGC 3 cut(s) 233, 892, 896
CfoI GCGC 5 cut(s) 128, 143, 191, 268, 339
Cfr10I RCCGGY 2 cut(s) 231, 894
Cfr13I GGNCC 1 cut(s) 1279
CseI GACGC 3 cut(s) 62, 1103, 1165
Csp6I GTAC 5 cut(s) 17, 494, 564, 569, 860
CviAII CATG 9 cut(s) 20, 250, 269, 604, 691, 747, 805, 863, 1192
CviQI GTAC 5 cut(s) 17, 494, 564, 569, 860
DdeI CTNAG 3 cut(s) 117, 439, 572
DpnI GATC 2 cut(s) 534, 1045
DpnII GATC 2 cut(s) 532, 1043
DrdI GACNNNNNNGTC 1 cut(s) 254
DseDI GACNNNNNNGTC 1 cut(s) 254
EaeI YGGCCR 1 cut(s) 229
EagI CGGCCG 1 cut(s) 229
Eam1104I CTCTTC 2 cut(s) 651, 728
EarI CTCTTC 2 cut(s) 651, 728
EciI GGCGGA 1 cut(s) 250
EclXI CGGCCG 1 cut(s) 229
Eco130I CCWWGG 1 cut(s) 1315
Eco147I AGGCCT 2 cut(s) 520, 813
Eco24I GRGCYC 1 cut(s) 421
Eco47I GGWCC 1 cut(s) 1279
Eco52I CGGCCG 1 cut(s) 229
Eco72I CACGTG 1 cut(s) 401
Eco88I CYCGRG 1 cut(s) 420
EcoRII CCWGG 4 cut(s) 413, 515, 1083, 1218
EcoT14I CCWWGG 1 cut(s) 1315
EcoT38I GRGCYC 1 cut(s) 421
ErhI CCWWGG 1 cut(s) 1315
FaeI CATG 9 cut(s) 23, 253, 272, 607, 694, 750, 808, 866, 1195
FaqI GGGAC 2 cut(s) 11, 786
FatI CATG 9 cut(s) 19, 249, 268, 603, 690, 746, 804, 862, 1191
FauI CCCGC 1 cut(s) 899
Fnu4HI GCNGC 4 cut(s) 79, 450, 1020, 1182
FokI GGATG 1 cut(s) 250
FriOI GRGCYC 1 cut(s) 421
Fsp4HI GCNGC 4 cut(s) 79, 450, 1020, 1182
FspBI CTAG 1 cut(s) 1316
GlaI GCGC 5 cut(s) 127, 142, 190, 267, 338
GluI GCNGC 4 cut(s) 79, 450, 1020, 1182
GsaI CCCAGC 1 cut(s) 218
HaeIII GGCC 3 cut(s) 231, 520, 813
HapII CCGG 4 cut(s) 185, 232, 843, 895
HgaI GACGC 3 cut(s) 62, 1103, 1165
HhaI GCGC 5 cut(s) 128, 143, 191, 268, 339
Hin1II CATG 9 cut(s) 23, 253, 272, 607, 694, 750, 808, 866, 1195
Hin6I GCGC 5 cut(s) 126, 141, 189, 266, 337
HinP1I GCGC 5 cut(s) 126, 141, 189, 266, 337
HincII GTYRAC 2 cut(s) 366, 1200
HindII GTYRAC 2 cut(s) 366, 1200
HinfI GANTC 4 cut(s) 24, 952, 1253, 1296
HpaII CCGG 4 cut(s) 185, 232, 843, 895
HphI GGTGA 3 cut(s) 50, 179, 1230
Hpy166II GTNNAC 6 cut(s) 366, 398, 710, 860, 1200, 1238
Hpy188I TCNGA 4 cut(s) 774, 1077, 1111, 1264
Hpy188III TCNNGA 7 cut(s) 97, 348, 461, 949, 983, 1118, 1162
Hpy8I GTNNAC 6 cut(s) 366, 398, 710, 860, 1200, 1238
Hpy99I CGWCG 1 cut(s) 78
HpyAV CCTTC 5 cut(s) 247, 268, 503, 980, 995
HpyCH4III ACNGT 5 cut(s) 196, 568, 824, 1128, 1204
HpyCH4IV ACGT 6 cut(s) 400, 799, 931, 960, 1234, 1285
HpyF10VI GCNNNNNNNGC 7 cut(s) 147, 197, 311, 1019, 1028, 1111, 1310
HpyF3I CTNAG 3 cut(s) 117, 439, 572
HpySE526I ACGT 6 cut(s) 400, 799, 931, 960, 1234, 1285
Hsp92II CATG 9 cut(s) 23, 253, 272, 607, 694, 750, 808, 866, 1195
HspAI GCGC 5 cut(s) 126, 141, 189, 266, 337
KroI GCCGGC 2 cut(s) 231, 894
KroNI GCCGGC 2 cut(s) 233, 896
Kzo9I GATC 2 cut(s) 532, 1043
LmnI GCTCC 4 cut(s) 344, 410, 593, 753
Lsp1109I GCAGC 4 cut(s) 65, 461, 1006, 1168
LweI GCATC 3 cut(s) 201, 292, 776
MaeI CTAG 1 cut(s) 1316
MaeII ACGT 6 cut(s) 400, 799, 931, 960, 1234, 1285
MaeIII GTNAC 1 cut(s) 324
MalI GATC 2 cut(s) 534, 1045
MboI GATC 2 cut(s) 532, 1043
MboII GAAGA 6 cut(s) 455, 476, 638, 659, 745, 1133
MfeI CAATTG 2 cut(s) 1047, 1059
MhlI GDGCHC 1 cut(s) 421
MluCI AATT 7 cut(s) 5, 279, 284, 378, 828, 1047, 1059
MlyI GAGTC 3 cut(s) 33, 1262, 1305
MmeI TCCRAC 1 cut(s) 1306
MroNI GCCGGC 2 cut(s) 231, 894
MseI TTAA 2 cut(s) 320, 588
MspCI CTTAAG 1 cut(s) 319
MspI CCGG 4 cut(s) 185, 232, 843, 895
MspR9I CCNGG 6 cut(s) 186, 415, 517, 843, 1085, 1220
MunI CAATTG 2 cut(s) 1047, 1059
Mva1269I GAATGC 3 cut(s) 314, 425, 1184
MvaI CCWGG 4 cut(s) 415, 517, 1085, 1220
MvnI CGCG 1 cut(s) 126
MwoI GCNNNNNNNGC 7 cut(s) 147, 197, 311, 1019, 1028, 1111, 1310
NaeI GCCGGC 2 cut(s) 233, 896
NciI CCSGG 2 cut(s) 186, 843
NdeII GATC 2 cut(s) 532, 1043
NgoMIV GCCGGC 2 cut(s) 231, 894
NlaIII CATG 9 cut(s) 23, 253, 272, 607, 694, 750, 808, 866, 1195
NlaIV GGNNCC 6 cut(s) 412, 514, 601, 785, 1224, 1325
NspI RCATGY 2 cut(s) 694, 866
PaqCI CACCTGC 2 cut(s) 587, 877
PceI AGGCCT 2 cut(s) 520, 813
PctI GAATGC 3 cut(s) 314, 425, 1184
PdiI GCCGGC 2 cut(s) 233, 896
PfeI GAWTC 1 cut(s) 952
PflMI CCANNNNNTGG 2 cut(s) 544, 1247
PkrI GCNGC 4 cut(s) 80, 451, 1021, 1183
PleI GAGTC 3 cut(s) 32, 1261, 1304
PmaCI CACGTG 1 cut(s) 401
PmlI CACGTG 1 cut(s) 401
PpsI GAGTC 3 cut(s) 32, 1261, 1304
Ppu21I YACGTR 1 cut(s) 401
Psp6I CCWGG 4 cut(s) 413, 515, 1083, 1218
PspCI CACGTG 1 cut(s) 401
PspFI CCCAGC 1 cut(s) 214
PspGI CCWGG 4 cut(s) 413, 515, 1083, 1218
PspN4I GGNNCC 6 cut(s) 412, 514, 601, 785, 1224, 1325
PspPI GGNCC 1 cut(s) 1279
RsaI GTAC 5 cut(s) 18, 495, 565, 570, 861
RsaNI GTAC 5 cut(s) 17, 494, 564, 569, 860
SaqAI TTAA 2 cut(s) 320, 588
SatI GCNGC 4 cut(s) 79, 450, 1020, 1182
Sau3AI GATC 2 cut(s) 532, 1043
Sau96I GGNCC 1 cut(s) 1279
SchI GAGTC 3 cut(s) 33, 1262, 1305
ScrFI CCNGG 6 cut(s) 186, 415, 517, 843, 1085, 1220
SduI GDGCHC 1 cut(s) 421
SfaNI GCATC 3 cut(s) 201, 292, 776
SinI GGWCC 1 cut(s) 1279
SmlI CTYRAG 3 cut(s) 95, 319, 1160
SmoI CTYRAG 3 cut(s) 95, 319, 1160
Sse9I AATT 7 cut(s) 5, 279, 284, 378, 828, 1047, 1059
SseBI AGGCCT 2 cut(s) 520, 813
SsiI CCGC 2 cut(s) 235, 892
SspI AATATT 2 cut(s) 883, 1039
SspMI CTAG 1 cut(s) 1316
StuI AGGCCT 2 cut(s) 520, 813
StyD4I CCNGG 6 cut(s) 184, 413, 515, 841, 1083, 1218
StyI CCWWGG 1 cut(s) 1315
TaaI ACNGT 5 cut(s) 196, 568, 824, 1128, 1204
TaiI ACGT 6 cut(s) 403, 802, 934, 963, 1237, 1288
TasI AATT 7 cut(s) 5, 279, 284, 378, 828, 1047, 1059
TatI WGTACW 3 cut(s) 16, 568, 859
TfiI GAWTC 1 cut(s) 952
Tru1I TTAA 2 cut(s) 320, 588
Tru9I TTAA 2 cut(s) 320, 588
TscAI CASTG 1 cut(s) 396
TseI GCWGC 4 cut(s) 78, 449, 1019, 1181
TspDTI ATGAA 6 cut(s) 17, 266, 821, 942, 984, 1149
TspGWI ACGGA 1 cut(s) 1289
TspRI CASTG 1 cut(s) 396
Van91I CCANNNNNTGG 2 cut(s) 544, 1247
Vha464I CTTAAG 1 cut(s) 319
VpaK11BI GGWCC 1 cut(s) 1279
XapI RAATTY 3 cut(s) 5, 284, 378
XceI RCATGY 2 cut(s) 694, 866
XmaJI CCTAGG 1 cut(s) 1315
XspI CTAG 1 cut(s) 1316
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.