Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0013544

Physical Location & Seq

Genomic Coordinates Forward (+)

6005388 .. 6005618

Gene Structure 231 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0077900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 231 bp

ATGCAAATACCGCTGAATTCCAATGCTGGGAGTAGTGGGAATGGCGACAAGGGGAAGTTAGTCCCTCAAACAAATGATACAGCAGGAGAAACAGGGGTGGACGAGCAAAACCAAAACCTGAACGAGGTCATTAAGTCTACCGAGAAAACATTAGCCCTCATTCACCAGCTCTACCTCACTGTCTCTTCATTCACTATCGGTTCTCAGCTCCCCCTCCTCAAGCGCCTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004609 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006508 GO:0006629 GO:0006644 GO:0006650 GO:0006656 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008610 GO:0008654 GO:0009058 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010604 GO:0010628 GO:0010635 GO:0010636 GO:0010638 GO:0010821 GO:0010822 GO:0010954 GO:0016020 GO:0016021 GO:0016485 GO:0016540 GO:0016829 GO:0016830 GO:0016831 GO:0019222 GO:0019538 GO:0019637 GO:0019866 GO:0022603 GO:0030162 GO:0031090 GO:0031224 GO:0031300 GO:0031301 GO:0031304 GO:0031305 GO:0031323 GO:0031325 GO:0031966 GO:0031967 GO:0031975 GO:0032268 GO:0032270 GO:0032592 GO:0033043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045017 GO:0045862 GO:0046470 GO:0046474 GO:0046486 GO:0048518 GO:0048522 GO:0050789 GO:0050793 GO:0050794 GO:0051094 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051604 GO:0060255 GO:0065007 GO:0070613 GO:0071704 GO:0080090 GO:0090407 GO:0097164 GO:0098573 GO:1901564 GO:1901566 GO:1901576 GO:1903317 GO:1903319

KEGG Pathways

Metabolic & Signaling

ko00564 ko01100 ko01110 map00564 map01100 map01110

Pfam Domains

Protein Families

PS_Dcarbxylase

Protein Analysis

76

Amino Acids

8.14

Weight (kDa)

5.62

Isoelectric Point (pI)

15.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013544)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16700 AT4G16700
fragaria_vesca	FvH4_5g19150
malus_domestica	MD06G1055900.v1.1
prunus_persica	Prupe.5G066800_v2.0.a1 Prupe.5G066800_v2.0.a1 Prupe.5G066800_v2.0.a1
pyrus_communis	pycom06g04690
rosa_chinensis	RchiOBHm_Chr7g0203641
rosa_laevigata	RLG00000003513
rosa_multiflora	Rmu_sc0019220.1_g000001
rosa_roxburghii	Rroxscaffold_3G00253620
rosa_rugosa	Rorug07G0077900
rosa_samantha	Rh5CG208900 Rh7BG206800 Rh7CG219800 Rh7DG214400
rosa_wichuraiana	Rw7G018090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	137
AciI	CCGC	1 cut(s)	11
AcsI	RAATTY	1 cut(s)	16
AfiI	CCNNNNNNNGG	2 cut(s)	27, 124
AluBI	AGCT	2 cut(s)	169, 208
AluI	AGCT	2 cut(s)	169, 208
Alw26I	GTCTC	1 cut(s)	187
ApoI	RAATTY	1 cut(s)	16
AspLEI	GCGC	1 cut(s)	225
AsuHPI	GGTGA	1 cut(s)	155
BcoDI	GTCTC	1 cut(s)	187
BfoI	RGCGCY	1 cut(s)	226
BpuEI	CTTGAG	1 cut(s)	203
Bsc4I	CCNNNNNNNGG	2 cut(s)	27, 124
BseLI	CCNNNNNNNGG	2 cut(s)	27, 124
BseMII	CTCAG	1 cut(s)	218
BseRI	GAGGAG	1 cut(s)	206
BseYI	CCCAGC	1 cut(s)	26
BslFI	GGGAC	1 cut(s)	47
BslI	CCNNNNNNNGG	2 cut(s)	27, 124
BsmAI	GTCTC	1 cut(s)	187
BsmFI	GGGAC	1 cut(s)	47
BspACI	CCGC	1 cut(s)	11
BspCNI	CTCAG	1 cut(s)	217
Bst4CI	ACNGT	1 cut(s)	181
Bst6I	CTCTTC	1 cut(s)	190
BstDEI	CTNAG	1 cut(s)	204
BstENI	CCTNNNNNAGG	1 cut(s)	122
BstH2I	RGCGCY	1 cut(s)	226
BstHHI	GCGC	1 cut(s)	225
BstMAI	GTCTC	1 cut(s)	187
BstMWI	GCNNNNNNNGC	1 cut(s)	10
BtsIMutI	CAGTG	1 cut(s)	177
CfoI	GCGC	1 cut(s)	225
CviJI	RGCY	3 cut(s)	155, 169, 208
CviKI_1	RGCY	3 cut(s)	155, 169, 208
DdeI	CTNAG	1 cut(s)	204
Eam1104I	CTCTTC	1 cut(s)	190
EarI	CTCTTC	1 cut(s)	190
EcoNI	CCTNNNNNAGG	1 cut(s)	122
EcoRI	GAATTC	1 cut(s)	16
FaiI	YATR	1 cut(s)	229
FaqI	GGGAC	1 cut(s)	47
FblI	GTMKAC	1 cut(s)	137
GlaI	GCGC	1 cut(s)	224
GsaI	CCCAGC	1 cut(s)	30
HaeII	RGCGCY	1 cut(s)	226
HhaI	GCGC	1 cut(s)	225
Hin6I	GCGC	1 cut(s)	223
HinP1I	GCGC	1 cut(s)	223
HphI	GGTGA	1 cut(s)	155
Hpy166II	GTNNAC	2 cut(s)	100, 138
Hpy8I	GTNNAC	2 cut(s)	100, 138
HpyCH4III	ACNGT	1 cut(s)	181
HpyCH4V	TGCA	1 cut(s)	4
HpyF10VI	GCNNNNNNNGC	1 cut(s)	10
HpyF3I	CTNAG	1 cut(s)	204
HspAI	GCGC	1 cut(s)	223
LmnI	GCTCC	1 cut(s)	213
LpnPI	CCDG	5 cut(s)	12, 69, 78, 131, 179
MboII	GAAGA	1 cut(s)	177
MluCI	AATT	1 cut(s)	16
MnlI	CCTC	6 cut(s)	75, 118, 167, 185, 224, 227
MseI	TTAA	1 cut(s)	132
MspA1I	CMGCKG	1 cut(s)	13
MwoI	GCNNNNNNNGC	1 cut(s)	10
PspFI	CCCAGC	1 cut(s)	26
SaqAI	TTAA	1 cut(s)	132
SetI	ASST	5 cut(s)	120, 129, 171, 177, 210
SgeI	CNNG	9 cut(s)	39, 61, 96, 105, 115, 130, 136, 154, 178
SmlI	CTYRAG	1 cut(s)	218
SmoI	CTYRAG	1 cut(s)	218
Sse9I	AATT	1 cut(s)	16
SsiI	CCGC	1 cut(s)	11
TaaI	ACNGT	1 cut(s)	181
TasI	AATT	1 cut(s)	16
Tru1I	TTAA	1 cut(s)	132
Tru9I	TTAA	1 cut(s)	132
TscAI	CASTG	1 cut(s)	184
TspDTI	ATGAA	1 cut(s)	177
TspRI	CASTG	1 cut(s)	184
XagI	CCTNNNNNAGG	1 cut(s)	122
XapI	RAATTY	1 cut(s)	16
XmiI	GTMKAC	1 cut(s)	137

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.