Rroxscaffold_3G00253620

Catalyzes the formation of phosphatidylethanolamine (PtdEtn) from phosphatidylserine (PtdSer). Plays a central role in phospholipid metabolism and in the interorganelle trafficking of phosphatidylserine

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
Physical Location & Seq
Forward (+)
47710357 .. 47714642
4286 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00253620.1

Sequence Viewer

Length: 1284 bp
ATGAAACTTAGGGTTGTACATGGAGTCCCCATATTCCCTCACTCCACACATCTCAATCACCTCCACCACCAGCGTCGCTGCTTCACTTCTCTTCTGAAGAAACTCCAAAAGACCACTCAGGTCCGCGCTTCTCTCAATGGCGGAAGTGGAAGTTCCAAAGGAAATGGTGAGTGGTTTCTGTTGCCCGGCGCAACGGTGGCTACACTACTGATGCTGGGTGCTCTACATGCTCGTCGGATGTATGAGGACATGAAGGTTGTGGAGGCACATGAGAAGGGAACTGAATTTGAGTTCCAGCCTGATGTTGCTGCCTCTGCGCTCCATTTCAAGATGTTGGGGAGTGTTGACAAGTGTGGTAAGATCTTCCTGTTTCTTGATCTAGACTTAGAAGAAGCAGCTCTGCCTCTGGATGAATATGCATCATTACGAGATTTCTTTGTACGCACCTTGAAAGAAGGTTCCAGGCCTATTGACCCCGATCCCCAATGTCTGGTTAGTCCTGTCGATGGTACTGTACTAAGATTTGGGGAGATTAAAGGAGCAGGTGCTATGATTGAGCAAGTCAAAGGGTTTTCTTATTCAGTCTTTTCTCTTCTTGGTGCAAGCTCGTTTCTTCCTACTATAGCTAAAGGAGATATGCATGATGAGAGTAGTGAAGCAGAAAATGCTTCTGGGGAGAAGAGTAGGAAGTCATGGTGGAGTATATCATTTGCATCTCCTAAAGTTTGGAACCCTTACTCAGCACGTCCTACGAAAGGCCTTTTTTACTGTGTAATTTACTTGAAGCCTGGAGATTATCATCGTATACATGCACCTGCTGATTGGAATATTCTTGTCCGCCGGCATTTTTCTGGTCGTCTATATCCTGTAAATGAACGTGCTACAAGAACAATCAGAAATCTTTATGTTGAGAATGAACGGGTTGTTCTGGAAGGTCTATGGCAAGAAGGATTTATGGCACTTGCTGCTGTTGGTGCAACAAATATTGGATCAATTGAGCTTTCCATTGAACCTGAACTTCGGACGAACCAGGCAAAAAAGAAGTTACTGCACTCCGATCGTCCAGAAGAACGGTTGTATGAACCTGATGGTGTTGGTAGGACGCTCAAGAAAGGCGATGAGGTAGCTGCATTCAATATGGGGTCAACGGTTGTGCTTGTTTTCCAGGCTCCCATATCACTTTCACCAGAAAATGGGGAGTCCTCATCAGATTTCAAGTTTTTGGTCCAACGTGGAGATAGAGTCCGTGTTGGAGAAGCCCTTGGGAGGTGCCAAGATCAGTAA

Protein Analysis

427

Amino Acids

47.58

Weight (kDa)

8.17

Isoelectric Point (pI)

35.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PS_Dcarbxylase PF02666 142 - 422 5.1e-53 Phosphatidylserine decarboxylase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0013544)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 533, 823
Acc36I ACCTGC 2 cut(s) 533, 823
AccB1I GGYRCC 1 cut(s) 1269
AccB7I CCANNNNNTGG 2 cut(s) 490, 1193
AccI GTMKAC 1 cut(s) 805
AccII CGCG 1 cut(s) 126
AciI CCGC 3 cut(s) 124, 141, 838
AclWI GGATC 2 cut(s) 473, 997
AcsI RAATTY 1 cut(s) 284
AcuI CTGAAG 1 cut(s) 116
AfaI GTAC 4 cut(s) 18, 441, 511, 516
AfiI CCNNNNNNNGG 5 cut(s) 490, 506, 755, 1193, 1266
AgsI TTSAA 6 cut(s) 328, 451, 784, 1010, 1135, 1216
AjiI CACGTC 1 cut(s) 746
AjnI CCWGG 4 cut(s) 461, 787, 1029, 1164
AluBI AGCT 5 cut(s) 398, 606, 626, 1000, 1127
AluI AGCT 5 cut(s) 398, 606, 626, 1000, 1127
Alw21I GWGCWC 1 cut(s) 223
AlwI GGATC 2 cut(s) 473, 997
AoxI GGCC 2 cut(s) 464, 757
ApeKI GCWGC 5 cut(s) 78, 308, 395, 965, 1127
ApoI RAATTY 1 cut(s) 284
AspLEI GCGC 3 cut(s) 128, 191, 319
AspS9I GGNCC 2 cut(s) 121, 1225
AsuC2I CCSGG 1 cut(s) 186
AsuHPI GGTGA 3 cut(s) 50, 179, 1176
AvaII GGWCC 2 cut(s) 121, 1225
BanI GGYRCC 1 cut(s) 1269
Bbv12I GWGCWC 1 cut(s) 223
BbvI GCAGC 5 cut(s) 65, 295, 407, 952, 1114
BccI CCATC 2 cut(s) 500, 1082
BcgI CGANNNNNNTGC 2 cut(s) 1040, 1074
BciT130I CCWGG 4 cut(s) 463, 789, 1031, 1166
BcnI CCSGG 1 cut(s) 186
BfaI CTAG 1 cut(s) 380
BfmI CTRYAG 1 cut(s) 621
BfuAI ACCTGC 2 cut(s) 533, 823
BglII AGATCT 1 cut(s) 360
BisI GCNGC 5 cut(s) 79, 309, 396, 966, 1128
BlsI GCNGC 5 cut(s) 80, 310, 397, 967, 1129
Bme1390I CCNGG 5 cut(s) 186, 463, 789, 1031, 1166
Bme18I GGWCC 2 cut(s) 121, 1225
BmgBI CACGTC 1 cut(s) 746
BmgT120I GGNCC 2 cut(s) 121, 1225
BmiI GGNNCC 4 cut(s) 460, 731, 1170, 1271
BmrFI CCNGG 5 cut(s) 186, 463, 789, 1031, 1166
BmsI GCATC 3 cut(s) 201, 428, 722
BpmI CTGGAG 1 cut(s) 810
BpuEI CTTGAG 1 cut(s) 1091
BpuMI CCSGG 1 cut(s) 186
BsaBI GATNNNNATC 1 cut(s) 798
BsaJI CCNNGG 1 cut(s) 1261
BsaXI ACNNNNNCTCC 2 cut(s) 1227, 1257
Bsc4I CCNNNNNNNGG 5 cut(s) 490, 506, 755, 1193, 1266
Bse118I RCCGGY 1 cut(s) 840
Bse8I GATNNNNATC 1 cut(s) 798
BseBI CCWGG 4 cut(s) 463, 789, 1031, 1166
BseDI CCNNGG 1 cut(s) 1261
BseGI GGATG 2 cut(s) 243, 415
BseJI GATNNNNATC 1 cut(s) 798
BseLI CCNNNNNNNGG 5 cut(s) 490, 506, 755, 1193, 1266
BseMII CTCAG 2 cut(s) 131, 753
BseXI GCAGC 5 cut(s) 65, 295, 407, 952, 1114
BseYI CCCAGC 1 cut(s) 214
BsgI GTGCAG 1 cut(s) 1034
Bsh1236I CGCG 1 cut(s) 126
Bsh1285I CGRYCG 1 cut(s) 1060
BshFI GGCC 2 cut(s) 466, 759
BshNI GGYRCC 1 cut(s) 1269
BsiEI CGRYCG 1 cut(s) 1060
BsiHKAI GWGCWC 1 cut(s) 223
BsiSI CCGG 2 cut(s) 186, 841
BslFI GGGAC 1 cut(s) 11
BslI CCNNNNNNNGG 5 cut(s) 490, 506, 755, 1193, 1266
BsmFI GGGAC 1 cut(s) 11
BsmI GAATGC 1 cut(s) 1130
BsnI GGCC 2 cut(s) 466, 759
Bsp1286I GDGCHC 1 cut(s) 223
Bsp1407I TGTACA 1 cut(s) 16
Bsp143I GATC 6 cut(s) 360, 376, 478, 989, 1057, 1276
BspACI CCGC 3 cut(s) 124, 141, 838
BspANI GGCC 2 cut(s) 466, 759
BspCNI CTCAG 2 cut(s) 130, 752
BspFNI CGCG 1 cut(s) 126
BspLI GGNNCC 4 cut(s) 460, 731, 1170, 1271
BspMI ACCTGC 2 cut(s) 533, 823
BspPI GGATC 2 cut(s) 473, 997
BspT107I GGYRCC 1 cut(s) 1269
BsrFI RCCGGY 1 cut(s) 840
BsrGI TGTACA 1 cut(s) 16
BssAI RCCGGY 1 cut(s) 840
BssECI CCNNGG 1 cut(s) 1261
BssMI GATC 6 cut(s) 360, 376, 478, 989, 1057, 1276
BssNAI GTATAC 1 cut(s) 806
BssT1I CCWWGG 1 cut(s) 1261
Bst1107I GTATAC 1 cut(s) 806
Bst2UI CCWGG 4 cut(s) 463, 789, 1031, 1166
Bst4CI ACNGT 5 cut(s) 196, 514, 770, 1074, 1150
Bst6I CTCTTC 3 cut(s) 96, 597, 674
BstAPI GCANNNNNTGC 2 cut(s) 665, 965
BstAUI TGTACA 1 cut(s) 16
BstC8I GCNNGC 2 cut(s) 604, 842
BstDEI CTNAG 5 cut(s) 8, 117, 385, 518, 739
BstENI CCTNNNNNAGG 1 cut(s) 753
BstF5I GGATG 2 cut(s) 243, 415
BstFNI CGCG 1 cut(s) 126
BstHHI GCGC 3 cut(s) 128, 191, 319
BstKTI GATC 6 cut(s) 363, 379, 481, 992, 1060, 1279
BstMBI GATC 6 cut(s) 360, 376, 478, 989, 1057, 1276
BstMCI CGRYCG 1 cut(s) 1060
BstMWI GCNNNNNNNGC 6 cut(s) 197, 227, 314, 665, 965, 974
BstNI CCWGG 4 cut(s) 463, 789, 1031, 1166
BstNSI RCATGY 2 cut(s) 230, 812
BstSCI CCNGG 5 cut(s) 184, 461, 787, 1029, 1164
BstSFI CTRYAG 1 cut(s) 621
BstUI CGCG 1 cut(s) 126
BstV1I GCAGC 5 cut(s) 65, 295, 407, 952, 1114
BstX2I RGATCY 1 cut(s) 360
BstYI RGATCY 1 cut(s) 360
BstZ17I GTATAC 1 cut(s) 806
BsuRI GGCC 2 cut(s) 466, 759
BtgZI GCGATG 1 cut(s) 1131
BtrI CACGTC 1 cut(s) 746
BtsCI GGATG 2 cut(s) 243, 415
BveI ACCTGC 2 cut(s) 533, 823
Cac8I GCNNGC 2 cut(s) 604, 842
CfoI GCGC 3 cut(s) 128, 191, 319
Cfr10I RCCGGY 1 cut(s) 840
Cfr13I GGNCC 2 cut(s) 121, 1225
CseI GACGC 2 cut(s) 62, 1111
Csp6I GTAC 4 cut(s) 17, 440, 510, 515
CviAII CATG 7 cut(s) 20, 227, 250, 269, 641, 693, 809
CviQI GTAC 4 cut(s) 17, 440, 510, 515
DdeI CTNAG 5 cut(s) 8, 117, 385, 518, 739
DpnI GATC 6 cut(s) 362, 378, 480, 991, 1059, 1278
DpnII GATC 6 cut(s) 360, 376, 478, 989, 1057, 1276
Eam1104I CTCTTC 3 cut(s) 96, 597, 674
EarI CTCTTC 3 cut(s) 96, 597, 674
EciI GGCGGA 2 cut(s) 156, 827
Eco130I CCWWGG 1 cut(s) 1261
Eco147I AGGCCT 2 cut(s) 466, 759
Eco47I GGWCC 2 cut(s) 121, 1225
Eco57I CTGAAG 1 cut(s) 116
EcoNI CCTNNNNNAGG 1 cut(s) 753
EcoRII CCWGG 4 cut(s) 461, 787, 1029, 1164
EcoT14I CCWWGG 1 cut(s) 1261
EcoT22I ATGCAT 2 cut(s) 421, 642
ErhI CCWWGG 1 cut(s) 1261
FaeI CATG 7 cut(s) 23, 230, 253, 272, 644, 696, 812
FaqI GGGAC 1 cut(s) 11
FatI CATG 7 cut(s) 19, 226, 249, 268, 640, 692, 808
FblI GTMKAC 1 cut(s) 805
Fnu4HI GCNGC 5 cut(s) 79, 309, 396, 966, 1128
FokI GGATG 2 cut(s) 250, 422
Fsp4HI GCNGC 5 cut(s) 79, 309, 396, 966, 1128
FspBI CTAG 1 cut(s) 380
GlaI GCGC 3 cut(s) 127, 190, 318
GluI GCNGC 5 cut(s) 79, 309, 396, 966, 1128
GsaI CCCAGC 1 cut(s) 218
GsuI CTGGAG 1 cut(s) 810
HaeIII GGCC 2 cut(s) 466, 759
HapII CCGG 2 cut(s) 186, 841
HgaI GACGC 2 cut(s) 62, 1111
HhaI GCGC 3 cut(s) 128, 191, 319
Hin1II CATG 7 cut(s) 23, 230, 253, 272, 644, 696, 812
Hin6I GCGC 3 cut(s) 126, 189, 317
HinP1I GCGC 3 cut(s) 126, 189, 317
HincII GTYRAC 2 cut(s) 346, 1146
HindII GTYRAC 2 cut(s) 346, 1146
HinfI GANTC 3 cut(s) 24, 1199, 1242
HpaII CCGG 2 cut(s) 186, 841
HphI GGTGA 3 cut(s) 50, 179, 1176
Hpy166II GTNNAC 3 cut(s) 346, 806, 1146
Hpy188I TCNGA 6 cut(s) 96, 237, 896, 1023, 1057, 1210
Hpy188III TCNNGA 7 cut(s) 328, 374, 380, 407, 929, 1064, 1108
Hpy8I GTNNAC 3 cut(s) 346, 806, 1146
Hpy99I CGWCG 2 cut(s) 78, 237
HpyAV CCTTC 5 cut(s) 247, 268, 449, 926, 941
HpyCH4III ACNGT 5 cut(s) 196, 514, 770, 1074, 1150
HpyCH4IV ACGT 3 cut(s) 745, 877, 1231
HpyCH4V TGCA 8 cut(s) 419, 602, 640, 713, 812, 977, 1051, 1130
HpyF10VI GCNNNNNNNGC 6 cut(s) 197, 227, 314, 665, 965, 974
HpyF3I CTNAG 5 cut(s) 8, 117, 385, 518, 739
HpySE526I ACGT 3 cut(s) 745, 877, 1231
Hsp92II CATG 7 cut(s) 23, 230, 253, 272, 644, 696, 812
HspAI GCGC 3 cut(s) 126, 189, 317
KroI GCCGGC 1 cut(s) 840
KroNI GCCGGC 1 cut(s) 842
Kzo9I GATC 6 cut(s) 360, 376, 478, 989, 1057, 1276
LmnI GCTCC 3 cut(s) 324, 539, 1174
Lsp1109I GCAGC 5 cut(s) 65, 295, 407, 952, 1114
LweI GCATC 3 cut(s) 201, 428, 722
MaeI CTAG 1 cut(s) 380
MaeII ACGT 3 cut(s) 745, 877, 1231
MaeIII GTNAC 1 cut(s) 1044
MalI GATC 6 cut(s) 362, 378, 480, 991, 1059, 1278
MboI GATC 6 cut(s) 360, 376, 478, 989, 1057, 1276
MboII GAAGA 8 cut(s) 83, 109, 355, 401, 584, 605, 691, 1079
MfeI CAATTG 1 cut(s) 993
MflI RGATCY 1 cut(s) 360
MhlI GDGCHC 1 cut(s) 223
MluCI AATT 3 cut(s) 284, 774, 993
MlyI GAGTC 3 cut(s) 33, 1208, 1251
MmeI TCCRAC 3 cut(s) 215, 1231, 1252
MnlI CCTC 9 cut(s) 48, 71, 238, 256, 322, 414, 1114, 1213, 1260
Mph1103I ATGCAT 2 cut(s) 421, 642
MroNI GCCGGC 1 cut(s) 840
MseI TTAA 1 cut(s) 534
MspI CCGG 2 cut(s) 186, 841
MspR9I CCNGG 5 cut(s) 186, 463, 789, 1031, 1166
MunI CAATTG 1 cut(s) 993
Mva1269I GAATGC 1 cut(s) 1130
MvaI CCWGG 4 cut(s) 463, 789, 1031, 1166
MvnI CGCG 1 cut(s) 126
MwoI GCNNNNNNNGC 6 cut(s) 197, 227, 314, 665, 965, 974
NaeI GCCGGC 1 cut(s) 842
NciI CCSGG 1 cut(s) 186
NdeII GATC 6 cut(s) 360, 376, 478, 989, 1057, 1276
NgoMIV GCCGGC 1 cut(s) 840
NlaIII CATG 7 cut(s) 23, 230, 253, 272, 644, 696, 812
NlaIV GGNNCC 4 cut(s) 460, 731, 1170, 1271
NsiI ATGCAT 2 cut(s) 421, 642
NspI RCATGY 2 cut(s) 230, 812
PaqCI CACCTGC 2 cut(s) 533, 823
PceI AGGCCT 2 cut(s) 466, 759
PctI GAATGC 1 cut(s) 1130
PdiI GCCGGC 1 cut(s) 842
PflMI CCANNNNNTGG 2 cut(s) 490, 1193
PkrI GCNGC 5 cut(s) 80, 310, 397, 967, 1129
Ple19I CGATCG 1 cut(s) 1060
PleI GAGTC 3 cut(s) 32, 1207, 1250
PpsI GAGTC 3 cut(s) 32, 1207, 1250
Psp6I CCWGG 4 cut(s) 461, 787, 1029, 1164
PspFI CCCAGC 1 cut(s) 214
PspGI CCWGG 4 cut(s) 461, 787, 1029, 1164
PspN4I GGNNCC 4 cut(s) 460, 731, 1170, 1271
PspPI GGNCC 2 cut(s) 121, 1225
PsuI RGATCY 1 cut(s) 360
PvuI CGATCG 1 cut(s) 1060
RsaI GTAC 4 cut(s) 18, 441, 511, 516
RsaNI GTAC 4 cut(s) 17, 440, 510, 515
SaqAI TTAA 1 cut(s) 534
SatI GCNGC 5 cut(s) 79, 309, 396, 966, 1128
Sau3AI GATC 6 cut(s) 360, 376, 478, 989, 1057, 1276
Sau96I GGNCC 2 cut(s) 121, 1225
SchI GAGTC 3 cut(s) 33, 1208, 1251
ScrFI CCNGG 5 cut(s) 186, 463, 789, 1031, 1166
SduI GDGCHC 1 cut(s) 223
SfaNI GCATC 3 cut(s) 201, 428, 722
SfcI CTRYAG 1 cut(s) 621
SinI GGWCC 2 cut(s) 121, 1225
SmlI CTYRAG 1 cut(s) 1106
SmoI CTYRAG 1 cut(s) 1106
Sse9I AATT 3 cut(s) 284, 774, 993
SseBI AGGCCT 2 cut(s) 466, 759
SsiI CCGC 3 cut(s) 124, 141, 838
SspI AATATT 2 cut(s) 829, 985
SspMI CTAG 1 cut(s) 380
StuI AGGCCT 2 cut(s) 466, 759
StyD4I CCNGG 5 cut(s) 184, 461, 787, 1029, 1164
StyI CCWWGG 1 cut(s) 1261
TaaI ACNGT 5 cut(s) 196, 514, 770, 1074, 1150
TaiI ACGT 3 cut(s) 748, 880, 1234
TaqI TCGA 1 cut(s) 504
TasI AATT 3 cut(s) 284, 774, 993
TatI WGTACW 2 cut(s) 16, 514
Tru1I TTAA 1 cut(s) 534
Tru9I TTAA 1 cut(s) 534
TseI GCWGC 5 cut(s) 78, 308, 395, 965, 1127
TspDTI ATGAA 6 cut(s) 17, 266, 426, 888, 930, 1095
TspGWI ACGGA 1 cut(s) 1235
Van91I CCANNNNNTGG 2 cut(s) 490, 1193
VpaK11BI GGWCC 2 cut(s) 121, 1225
XagI CCTNNNNNAGG 1 cut(s) 753
XapI RAATTY 1 cut(s) 284
XbaI TCTAGA 1 cut(s) 379
XceI RCATGY 2 cut(s) 230, 812
XmiI GTMKAC 1 cut(s) 805
XspI CTAG 1 cut(s) 380
Zsp2I ATGCAT 2 cut(s) 421, 642
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.