Rh5CG208900

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
Physical Location & Seq
Reverse (-)
21082164 .. 21083782
1619 bp
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UTR
Exon/CDS
Intron
Rh5CG208900.1

Sequence Viewer

Length: 153 bp
ATGGCCATAGCAAAGCAGGATCCTGAAGAAAACATGAGGGAAGCTGTTGTGCAGCAGCACACGATTGACATATCATTGAAGGAAACTCACCTTCTCAGCGTTGGCAGCAGCTTGGCAGTTTCCAAATGTAATTCTTCTCTAACAGCTAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

50

Amino Acids

5.37

Weight (kDa)

5.43

Isoelectric Point (pI)

35.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0013544)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 14, 27
AcoI YGGCCR 1 cut(s) 3
AcuI CTGAAG 1 cut(s) 45
AgsI TTSAA 1 cut(s) 79
AluBI AGCT 3 cut(s) 44, 111, 146
AluI AGCT 3 cut(s) 44, 111, 146
AlwI GGATC 2 cut(s) 14, 27
AoxI GGCC 1 cut(s) 3
ApeKI GCWGC 4 cut(s) 52, 55, 105, 108
AsuHPI GGTGA 1 cut(s) 80
BalI TGGCCA 1 cut(s) 5
BamHI GGATCC 1 cut(s) 19
BbvI GCAGC 4 cut(s) 64, 67, 117, 120
BfaI CTAG 1 cut(s) 147
BisI GCNGC 4 cut(s) 53, 56, 106, 109
BlsI GCNGC 4 cut(s) 54, 57, 107, 110
BmiI GGNNCC 1 cut(s) 21
BseMII CTCAG 1 cut(s) 109
BseXI GCAGC 4 cut(s) 64, 67, 117, 120
BsgI GTGCAG 1 cut(s) 71
BshFI GGCC 1 cut(s) 5
BsnI GGCC 1 cut(s) 5
Bsp143I GATC 1 cut(s) 19
BspANI GGCC 1 cut(s) 5
BspCNI CTCAG 1 cut(s) 108
BspLI GGNNCC 1 cut(s) 21
BspPI GGATC 2 cut(s) 14, 27
BssMI GATC 1 cut(s) 19
BstDEI CTNAG 1 cut(s) 95
BstKTI GATC 1 cut(s) 22
BstMBI GATC 1 cut(s) 19
BstMWI GCNNNNNNNGC 1 cut(s) 105
BstV1I GCAGC 4 cut(s) 64, 67, 117, 120
BstX2I RGATCY 1 cut(s) 19
BstYI RGATCY 1 cut(s) 19
BsuRI GGCC 1 cut(s) 5
CviAII CATG 1 cut(s) 34
CviJI RGCY 4 cut(s) 5, 44, 111, 146
CviKI_1 RGCY 4 cut(s) 5, 44, 111, 146
DdeI CTNAG 1 cut(s) 95
DpnI GATC 1 cut(s) 21
DpnII GATC 1 cut(s) 19
EaeI YGGCCR 1 cut(s) 3
Eco57I CTGAAG 1 cut(s) 45
FaeI CATG 1 cut(s) 37
FaiI YATR 3 cut(s) 8, 35, 71
FatI CATG 1 cut(s) 33
Fnu4HI GCNGC 4 cut(s) 53, 56, 106, 109
Fsp4HI GCNGC 4 cut(s) 53, 56, 106, 109
FspBI CTAG 1 cut(s) 147
GluI GCNGC 4 cut(s) 53, 56, 106, 109
HaeIII GGCC 1 cut(s) 5
Hin1II CATG 1 cut(s) 37
HphI GGTGA 1 cut(s) 80
Hpy188III TCNNGA 1 cut(s) 23
HpyAV CCTTC 2 cut(s) 73, 101
HpyCH4V TGCA 1 cut(s) 52
HpyF10VI GCNNNNNNNGC 1 cut(s) 105
HpyF3I CTNAG 1 cut(s) 95
Hsp92II CATG 1 cut(s) 37
Kzo9I GATC 1 cut(s) 19
LpnPI CCDG 2 cut(s) 2, 36
Lsp1109I GCAGC 4 cut(s) 64, 67, 117, 120
MaeI CTAG 1 cut(s) 147
MalI GATC 1 cut(s) 21
MboI GATC 1 cut(s) 19
MboII GAAGA 2 cut(s) 38, 126
MflI RGATCY 1 cut(s) 19
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 1 cut(s) 130
MluNI TGGCCA 1 cut(s) 5
MnlI CCTC 1 cut(s) 30
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
MseI TTAA 1 cut(s) 151
Msp20I TGGCCA 1 cut(s) 5
MwoI GCNNNNNNNGC 1 cut(s) 105
NdeII GATC 1 cut(s) 19
NlaIII CATG 1 cut(s) 37
NlaIV GGNNCC 1 cut(s) 21
PkrI GCNGC 4 cut(s) 54, 57, 107, 110
PspN4I GGNNCC 1 cut(s) 21
PsuI RGATCY 1 cut(s) 19
SaqAI TTAA 1 cut(s) 151
SatI GCNGC 4 cut(s) 53, 56, 106, 109
Sau3AI GATC 1 cut(s) 19
SetI ASST 4 cut(s) 46, 93, 113, 148
SgeI CNNG 5 cut(s) 29, 35, 46, 73, 124
Sse9I AATT 1 cut(s) 130
SspMI CTAG 1 cut(s) 147
TasI AATT 1 cut(s) 130
Tru1I TTAA 1 cut(s) 151
Tru9I TTAA 1 cut(s) 151
TseI GCWGC 4 cut(s) 52, 55, 105, 108
XspI CTAG 1 cut(s) 147
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.