MD06G1055900.v1.1

Catalyzes the formation of phosphatidylethanolamine (PtdEtn) from phosphatidylserine (PtdSer). Plays a central role in phospholipid metabolism and in the interorganelle trafficking of phosphatidylserine

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr06
Physical Location & Seq
Forward (+)
8353606 .. 8358349
4744 bp
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UTR
Exon/CDS
Intron
MD06G1055900.v1.1.491

Sequence Viewer

Length: 1329 bp
ATGGAATTTAGGGTTTCACATGGAATCCCTATGTTCTCTGGCTCCTCACACCTCGCTTACCTCCATAACCAGCGTCACTGCTTCTCATCCCTCAAGAAACTCCATAAAACCGCTCAAGCCCGCGCTTTTGTCAATGGCGGAGGCGGTGGTTCTAAAGGTGATTCTTTTTTGTTGCCTGGTGCAACGGTGGCTACATTACTTATGCTCGGTGTTCTACATGGTCGTCGGATGTATGAAGACCGGAAGGCCGAGGAGGCACGAGAGAATGGAGCTGAACTTGAGTTTCAACCAGATGTAAAATCTAAATTTTTAAGGTTGCTGCCTCTGCGCTCCATTTCCAGATGTTGGGGATTATTGACAAGTGTGGAAATTCCAGTCTCTCTCCGCTCGCATGTTTATGGAGCGTGGGCTCGGGCATTCCATTCAAACTTGGAAGAAGCAGCTCTGCCACTGGATGAATACGCATCTTTACGAGAGTTCTTTGTTCGAACCTTGAAAGAGGGTTCCAGGCCTATTGACCCCGACCCACGATGTCTGGTTAGTCCTGTGGATGGTACAGTGTTAAGATTTGGGGAGCTTAGAGAAGCAGGAGCAATGATTGAACAAGTAAAAGGTTTTTCTTATTCTGTTTTTTCTCTGCTCGGTGCAAACTCATTTCTTCCTATGATAGCTAAAGGAGATATGCATGAGGAGAGTAGTGAACCAGAAAATACTTCCAGGGAGAAGAATAAAAAGTCATGGTTGAGAGTTTCATTGGCTTCCCCTAAAGTTTGGGACCCTGTGTCAGAACGTCCTATGAATGGCCTATTTTACTGTGTAATTTACTTGAAGCCTGGAGACTATCATCGTATTCATGCACCCGCTGATTGGAATGTTCTTGTCCGCCGTCACTTTTCGGGTCGTCTATTTCCTGTAAATGAACGTGCTACAAGAACAATCAGAAACCTTTATGTTGAAAATGAACGGGTTGTTCTTGAAGGTCTATGGAAAGAAGGATTTATGGCACTTGCTGCTATTGGAGCAACAAATATTGGTTCGATTGAGCTTTCCATTGAACCAGAACTTCAGACAAACCAGGCCAGAAAGAAGTTACTGCCCTCAGGGCCTCCAGAAGAACAGTTATACGAGCCTGATGGTATTGGTAGGATGCTCAAGAAAGGGGATGAGGTAGCCGCATTCAACATGGGATCAACTGTGGTGCTTGTCTTCCAGGCCCCCATATCACTATCACAAGAAAAACGGGATTCCTCATCAGAGTTCAAGTTTTTGGTGCAACGTGGGGATAGAGTCCGCGTCGGAGAAGCATTAGGGAGGTGGTATGATCAGTAA

Protein Analysis

443

Amino Acids

49.62

Weight (kDa)

8.87

Isoelectric Point (pI)

46.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PS_Dcarbxylase PF02666 158 - 437 8.7e-52 Phosphatidylserine decarboxylase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0013544)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 345
AccBSI CCGCTC 2 cut(s) 113, 387
AccII CGCG 2 cut(s) 123, 1293
AciI CCGC 9 cut(s) 111, 121, 138, 144, 385, 861, 883, 1173, 1291
AclWI GGATC 1 cut(s) 1195
AcsI RAATTY 3 cut(s) 5, 305, 369
AcuI CTGAAG 1 cut(s) 1049
AfaI GTAC 1 cut(s) 556
AfiI CCNNNNNNNGG 4 cut(s) 345, 551, 800, 867
AhdI GACNNNNNGTC 1 cut(s) 781
AjnI CCWGG 6 cut(s) 175, 506, 716, 832, 1074, 1209
AluBI AGCT 5 cut(s) 272, 443, 577, 671, 1045
AluI AGCT 5 cut(s) 272, 443, 577, 671, 1045
Alw26I GTCTC 2 cut(s) 382, 831
AlwI GGATC 1 cut(s) 1195
Ama87I CYCGRG 1 cut(s) 411
AoxI GGCC 6 cut(s) 246, 509, 802, 1077, 1103, 1212
ApeKI GCWGC 3 cut(s) 319, 440, 1010
ApoI RAATTY 3 cut(s) 5, 305, 369
AspLEI GCGC 2 cut(s) 125, 330
AspS9I GGNCC 3 cut(s) 775, 1103, 1213
AsuHPI GGTGA 1 cut(s) 170
AsuII TTCGAA 1 cut(s) 487
AvaI CYCGRG 1 cut(s) 411
AvaII GGWCC 1 cut(s) 775
AxyI CCTNAGG 1 cut(s) 1099
BanII GRGCYC 1 cut(s) 412
BauI CACGAG 1 cut(s) 258
BbsI GAAGAC 2 cut(s) 243, 1198
BbvI GCAGC 3 cut(s) 306, 452, 997
BccI CCATC 2 cut(s) 545, 1127
BceAI ACGGC 1 cut(s) 870
BciT130I CCWGG 6 cut(s) 177, 508, 718, 834, 1076, 1211
BclI TGATCA 1 cut(s) 1321
BcoDI GTCTC 2 cut(s) 382, 831
BglI GCCNNNNNGGC 2 cut(s) 254, 1102
BisI GCNGC 4 cut(s) 320, 441, 1011, 1173
BlsI GCNGC 4 cut(s) 321, 442, 1012, 1174
Bme1390I CCNGG 6 cut(s) 177, 508, 718, 834, 1076, 1211
Bme18I GGWCC 1 cut(s) 775
BmeRI GACNNNNNGTC 1 cut(s) 781
BmeT110I CYCGRG 1 cut(s) 411
BmgT120I GGNCC 3 cut(s) 775, 1103, 1213
BmiI GGNNCC 5 cut(s) 43, 505, 776, 777, 1215
BmrFI CCNGG 6 cut(s) 177, 508, 718, 834, 1076, 1211
BmsI GCATC 2 cut(s) 473, 1137
BpiI GAAGAC 2 cut(s) 243, 1198
BpmI CTGGAG 2 cut(s) 855, 1092
Bpu14I TTCGAA 1 cut(s) 487
BpuEI CTTGAG 4 cut(s) 77, 99, 299, 1136
BsaJI CCNNGG 2 cut(s) 249, 717
BsaWI WCCGGW 1 cut(s) 240
Bsc4I CCNNNNNNNGG 4 cut(s) 345, 551, 800, 867
Bse1I ACTGG 2 cut(s) 374, 456
Bse21I CCTNAGG 1 cut(s) 1099
Bse3DI GCAATG 1 cut(s) 600
BseBI CCWGG 6 cut(s) 177, 508, 718, 834, 1076, 1211
BseDI CCNNGG 2 cut(s) 249, 717
BseGI GGATG 6 cut(s) 86, 234, 460, 556, 1152, 1168
BseLI CCNNNNNNNGG 4 cut(s) 345, 551, 800, 867
BseMI GCAATG 1 cut(s) 600
BseMII CTCAG 1 cut(s) 1113
BseNI ACTGG 2 cut(s) 374, 456
BseRI GAGGAG 3 cut(s) 34, 266, 704
BseXI GCAGC 3 cut(s) 306, 452, 997
Bsh1236I CGCG 2 cut(s) 123, 1293
BshFI GGCC 6 cut(s) 248, 511, 804, 1079, 1105, 1214
BsiHKCI CYCGRG 1 cut(s) 411
BsiSI CCGG 1 cut(s) 241
BslFI GGGAC 1 cut(s) 788
BslI CCNNNNNNNGG 4 cut(s) 345, 551, 800, 867
BsmAI GTCTC 2 cut(s) 382, 831
BsmFI GGGAC 1 cut(s) 788
BsmI GAATGC 2 cut(s) 416, 1175
BsnI GGCC 6 cut(s) 248, 511, 804, 1079, 1105, 1214
BsoBI CYCGRG 1 cut(s) 411
Bsp119I TTCGAA 1 cut(s) 487
Bsp1286I GDGCHC 1 cut(s) 412
Bsp143I GATC 2 cut(s) 1187, 1321
BspACI CCGC 9 cut(s) 111, 121, 138, 144, 385, 861, 883, 1173, 1291
BspANI GGCC 6 cut(s) 248, 511, 804, 1079, 1105, 1214
BspCNI CTCAG 1 cut(s) 1112
BspFNI CGCG 2 cut(s) 123, 1293
BspLI GGNNCC 5 cut(s) 43, 505, 776, 777, 1215
BspPI GGATC 1 cut(s) 1195
BspT104I TTCGAA 1 cut(s) 487
BsrBI CCGCTC 2 cut(s) 113, 387
BsrDI GCAATG 1 cut(s) 600
BsrI ACTGG 2 cut(s) 374, 456
BssECI CCNNGG 2 cut(s) 249, 717
BssMI GATC 2 cut(s) 1187, 1321
BssSI CACGAG 1 cut(s) 258
Bst2BI CACGAG 1 cut(s) 258
Bst2UI CCWGG 6 cut(s) 177, 508, 718, 834, 1076, 1211
Bst4CI ACNGT 5 cut(s) 187, 559, 815, 1119, 1195
BstAPI GCANNNNNTGC 1 cut(s) 1010
BstBI TTCGAA 1 cut(s) 487
BstC8I GCNNGC 2 cut(s) 121, 389
BstDEI CTNAG 2 cut(s) 578, 1099
BstF5I GGATG 6 cut(s) 86, 234, 460, 556, 1152, 1168
BstFNI CGCG 2 cut(s) 123, 1293
BstHHI GCGC 2 cut(s) 125, 330
BstKTI GATC 2 cut(s) 1190, 1324
BstMAI GTCTC 2 cut(s) 382, 831
BstMBI GATC 2 cut(s) 1187, 1321
BstMWI GCNNNNNNNGC 6 cut(s) 188, 254, 325, 1010, 1019, 1102
BstNI CCWGG 6 cut(s) 177, 508, 718, 834, 1076, 1211
BstNSI RCATGY 1 cut(s) 395
BstSCI CCNGG 6 cut(s) 175, 506, 716, 832, 1074, 1209
BstUI CGCG 2 cut(s) 123, 1293
BstV1I GCAGC 3 cut(s) 306, 452, 997
BstV2I GAAGAC 2 cut(s) 243, 1198
Bsu36I CCTNAGG 1 cut(s) 1099
BsuRI GGCC 6 cut(s) 248, 511, 804, 1079, 1105, 1214
BtsCI GGATG 6 cut(s) 86, 234, 460, 556, 1152, 1168
BtsI GCAGTG 1 cut(s) 76
BtsIMutI CAGTG 3 cut(s) 76, 449, 564
Cac8I GCNNGC 2 cut(s) 121, 389
CfoI GCGC 2 cut(s) 125, 330
Cfr13I GGNCC 3 cut(s) 775, 1103, 1213
CseI GACGC 2 cut(s) 62, 1282
Csp6I GTAC 1 cut(s) 555
CviAII CATG 7 cut(s) 20, 218, 392, 686, 738, 854, 1183
CviQI GTAC 1 cut(s) 555
DdeI CTNAG 2 cut(s) 578, 1099
DpnI GATC 2 cut(s) 1189, 1323
DpnII GATC 2 cut(s) 1187, 1321
DriI GACNNNNNGTC 1 cut(s) 781
Eam1105I GACNNNNNGTC 1 cut(s) 781
EciI GGCGGA 2 cut(s) 153, 872
Eco147I AGGCCT 1 cut(s) 511
Eco24I GRGCYC 1 cut(s) 412
Eco47I GGWCC 1 cut(s) 775
Eco57I CTGAAG 1 cut(s) 1049
Eco81I CCTNAGG 1 cut(s) 1099
Eco88I CYCGRG 1 cut(s) 411
EcoO109I RGGNCCY 3 cut(s) 775, 1103, 1213
EcoRII CCWGG 6 cut(s) 175, 506, 716, 832, 1074, 1209
EcoT22I ATGCAT 1 cut(s) 687
EcoT38I GRGCYC 1 cut(s) 412
FaeI CATG 7 cut(s) 23, 221, 395, 689, 741, 857, 1186
FaqI GGGAC 1 cut(s) 788
FatI CATG 7 cut(s) 19, 217, 391, 685, 737, 853, 1182
FauI CCCGC 2 cut(s) 128, 868
FbaI TGATCA 1 cut(s) 1321
Fnu4HI GCNGC 4 cut(s) 320, 441, 1011, 1173
FokI GGATG 6 cut(s) 73, 241, 467, 563, 1159, 1175
FriOI GRGCYC 1 cut(s) 412
Fsp4HI GCNGC 4 cut(s) 320, 441, 1011, 1173
GlaI GCGC 2 cut(s) 124, 329
GluI GCNGC 4 cut(s) 320, 441, 1011, 1173
GsuI CTGGAG 2 cut(s) 855, 1092
HaeIII GGCC 6 cut(s) 248, 511, 804, 1079, 1105, 1214
HapII CCGG 1 cut(s) 241
HgaI GACGC 2 cut(s) 62, 1282
HhaI GCGC 2 cut(s) 125, 330
Hin1II CATG 7 cut(s) 23, 221, 395, 689, 741, 857, 1186
Hin6I GCGC 2 cut(s) 123, 328
HinP1I GCGC 2 cut(s) 123, 328
HinfI GANTC 4 cut(s) 24, 161, 1244, 1287
HpaII CCGG 1 cut(s) 241
HphI GGTGA 1 cut(s) 170
Hpy166II GTNNAC 1 cut(s) 701
Hpy188I TCNGA 6 cut(s) 228, 787, 941, 1068, 1255, 1298
Hpy188III TCNNGA 5 cut(s) 94, 339, 974, 1109, 1153
Hpy8I GTNNAC 1 cut(s) 701
Hpy99I CGWCG 2 cut(s) 228, 1298
HpyAV CCTTC 3 cut(s) 238, 971, 986
HpyCH4III ACNGT 5 cut(s) 187, 559, 815, 1119, 1195
HpyCH4IV ACGT 3 cut(s) 790, 922, 1276
HpyCH4V TGCA 5 cut(s) 182, 647, 685, 857, 1273
HpyF10VI GCNNNNNNNGC 6 cut(s) 188, 254, 325, 1010, 1019, 1102
HpyF3I CTNAG 2 cut(s) 578, 1099
HpySE526I ACGT 3 cut(s) 790, 922, 1276
Hsp92II CATG 7 cut(s) 23, 221, 395, 689, 741, 857, 1186
HspAI GCGC 2 cut(s) 123, 328
KflI GGGWCCC 1 cut(s) 775
Ksp22I TGATCA 1 cut(s) 1321
Kzo9I GATC 2 cut(s) 1187, 1321
LmnI GCTCC 7 cut(s) 47, 269, 335, 401, 574, 590, 1019
Lsp1109I GCAGC 3 cut(s) 306, 452, 997
LweI GCATC 2 cut(s) 473, 1137
MaeII ACGT 3 cut(s) 790, 922, 1276
MaeIII GTNAC 3 cut(s) 74, 887, 1089
MalI GATC 2 cut(s) 1189, 1323
MbiI CCGCTC 2 cut(s) 113, 387
MboI GATC 2 cut(s) 1187, 1321
MboII GAAGA 6 cut(s) 248, 446, 650, 736, 1124, 1198
MhlI GDGCHC 1 cut(s) 412
MluCI AATT 4 cut(s) 5, 305, 369, 819
MlyI GAGTC 1 cut(s) 1296
MmeI TCCRAC 2 cut(s) 206, 1276
Mph1103I ATGCAT 1 cut(s) 687
MseI TTAA 2 cut(s) 311, 563
MslI CAYNNNNRTG 1 cut(s) 396
MspA1I CMGCKG 1 cut(s) 863
MspI CCGG 1 cut(s) 241
MspR9I CCNGG 6 cut(s) 177, 508, 718, 834, 1076, 1211
Mva1269I GAATGC 2 cut(s) 416, 1175
MvaI CCWGG 6 cut(s) 177, 508, 718, 834, 1076, 1211
MvnI CGCG 2 cut(s) 123, 1293
MwoI GCNNNNNNNGC 6 cut(s) 188, 254, 325, 1010, 1019, 1102
NdeII GATC 2 cut(s) 1187, 1321
NlaIII CATG 7 cut(s) 23, 221, 395, 689, 741, 857, 1186
NlaIV GGNNCC 5 cut(s) 43, 505, 776, 777, 1215
NmeAIII GCCGAG 1 cut(s) 274
NmuCI GTSAC 2 cut(s) 74, 887
NsiI ATGCAT 1 cut(s) 687
NspI RCATGY 1 cut(s) 395
NspV TTCGAA 1 cut(s) 487
PceI AGGCCT 1 cut(s) 511
PctI GAATGC 2 cut(s) 416, 1175
PfeI GAWTC 3 cut(s) 24, 161, 1244
PflMI CCANNNNNTGG 1 cut(s) 345
PkrI GCNGC 4 cut(s) 321, 442, 1012, 1174
PleI GAGTC 1 cut(s) 1295
PpsI GAGTC 1 cut(s) 1295
PpuMI RGGWCCY 1 cut(s) 775
Psp5II RGGWCCY 1 cut(s) 775
Psp6I CCWGG 6 cut(s) 175, 506, 716, 832, 1074, 1209
PspGI CCWGG 6 cut(s) 175, 506, 716, 832, 1074, 1209
PspN4I GGNNCC 5 cut(s) 43, 505, 776, 777, 1215
PspPI GGNCC 3 cut(s) 775, 1103, 1213
PspPPI RGGWCCY 1 cut(s) 775
RsaI GTAC 1 cut(s) 556
RsaNI GTAC 1 cut(s) 555
RseI CAYNNNNRTG 1 cut(s) 396
SaqAI TTAA 2 cut(s) 311, 563
SatI GCNGC 4 cut(s) 320, 441, 1011, 1173
Sau3AI GATC 2 cut(s) 1187, 1321
Sau96I GGNCC 3 cut(s) 775, 1103, 1213
SchI GAGTC 1 cut(s) 1296
ScrFI CCNGG 6 cut(s) 177, 508, 718, 834, 1076, 1211
SduI GDGCHC 1 cut(s) 412
SfaNI GCATC 2 cut(s) 473, 1137
SfuI TTCGAA 1 cut(s) 487
SinI GGWCC 1 cut(s) 775
SmiMI CAYNNNNRTG 1 cut(s) 396
SmlI CTYRAG 4 cut(s) 92, 114, 278, 1151
SmoI CTYRAG 4 cut(s) 92, 114, 278, 1151
Sse9I AATT 4 cut(s) 5, 305, 369, 819
SseBI AGGCCT 1 cut(s) 511
SsiI CCGC 9 cut(s) 111, 121, 138, 144, 385, 861, 883, 1173, 1291
SspI AATATT 1 cut(s) 1030
StuI AGGCCT 1 cut(s) 511
StyD4I CCNGG 6 cut(s) 175, 506, 716, 832, 1074, 1209
TaaI ACNGT 5 cut(s) 187, 559, 815, 1119, 1195
TaiI ACGT 3 cut(s) 793, 925, 1279
TaqI TCGA 2 cut(s) 487, 1037
TasI AATT 4 cut(s) 5, 305, 369, 819
TauI GCSGC 1 cut(s) 1175
TfiI GAWTC 3 cut(s) 24, 161, 1244
Tru1I TTAA 2 cut(s) 311, 563
Tru9I TTAA 2 cut(s) 311, 563
TscAI CASTG 3 cut(s) 83, 456, 564
TseFI GTSAC 2 cut(s) 74, 887
TseI GCWGC 3 cut(s) 319, 440, 1010
Tsp45I GTSAC 2 cut(s) 74, 887
TspDTI ATGAA 7 cut(s) 249, 471, 741, 812, 842, 933, 975
TspRI CASTG 3 cut(s) 83, 456, 564
Van91I CCANNNNNTGG 1 cut(s) 345
VpaK11BI GGWCC 1 cut(s) 775
XapI RAATTY 3 cut(s) 5, 305, 369
XceI RCATGY 1 cut(s) 395
Zsp2I ATGCAT 1 cut(s) 687
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.