Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0013544

Physical Location & Seq

Genomic Coordinates Reverse (-)

17338685 .. 17349017

Gene Structure 10333 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG206800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 945 bp

ATGGCCATAGCAAAGCAGGATCCTGAAGAAAACATGAGGGAAGCTGTTGTGCCACAGCACACGGTCCGCGCTTCTCTCAATGGCGGAAGTGGAAGTTCCAAAGGAAATGGTGATTGGTTTCTGTTGCCCGGCGCAACGGTGGCTACACTACTGATGCTGGGTGCTCTACATGCTCGTCGGATGTATGAGGACATGAAGGTTGTGGAGGCACATGAGAAGGGAACTGAATTTGAGTTCCAGCCTGATGTAAAATCTACATTCTTAAGGTTGCTGCCTCTGCGCTCCATTTCAAGATGTTGGGGAGTGTTGACAAGTGTGGAAATTCCAGTCTCGTTGCGTTCACATGTTTATGGAGCCTGGGCTCGAGCATTCCATTCAAACTTAGAAGAAGCAGCTCTGCCTCTGGATGAATATGTATCATTACGAGATTTCTTTGTACGCACCTTGAAAGAAGGTTCCAGGCCTATTGACCCCGATCCCCAATGTCTGGTTAGTCCTGTCGATGGTACTGTACTAAGATTTGGGGAGATTAAAGGAGCAGGTGCTATGATTGAGCAAGTCAAAGGGTTTTCTTATTCAGTCTTTTCTCTTCTTGGTGCAACCTCGTTTCTTCCTACTATAGCTAAAGGAGATATGCATGATGAGAGTAGTGAAGCAGAAAATGCTTCTGGGGAGAAGAGTAGGAAGTCATGGTGGAGTATATCATTCGCATCTCCTAAAGTTTGGAACCCTTACTCAGCACGTCCTATGAAAGGCCTTTTTTACTGTGTAATTTACTTGAAGCCTGGAGATTATCATCGTATACATGCACCTGCTGATTGGAATATTCTTGTCCGCCGGCATTTTTCTGGTCGTCTATATCCTGTAAATGAACGTGCTACAAGAACAATCAGAAATCTTTATGTTGAGAATGAACGGGTAAGTTGTTTCTTATTGGCCCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004609 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006508 GO:0006629 GO:0006644 GO:0006650 GO:0006656 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008610 GO:0008654 GO:0009058 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010604 GO:0010628 GO:0010635 GO:0010636 GO:0010638 GO:0010821 GO:0010822 GO:0010954 GO:0016020 GO:0016021 GO:0016485 GO:0016540 GO:0016829 GO:0016830 GO:0016831 GO:0019222 GO:0019538 GO:0019637 GO:0019866 GO:0022603 GO:0030162 GO:0031090 GO:0031224 GO:0031300 GO:0031301 GO:0031304 GO:0031305 GO:0031323 GO:0031325 GO:0031966 GO:0031967 GO:0031975 GO:0032268 GO:0032270 GO:0032592 GO:0033043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045017 GO:0045862 GO:0046470 GO:0046474 GO:0046486 GO:0048518 GO:0048522 GO:0050789 GO:0050793 GO:0050794 GO:0051094 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051604 GO:0060255 GO:0065007 GO:0070613 GO:0071704 GO:0080090 GO:0090407 GO:0097164 GO:0098573 GO:1901564 GO:1901566 GO:1901576 GO:1903317 GO:1903319

KEGG Pathways

Metabolic & Signaling

ko00564 ko01100 ko01110 map00564 map01100 map01110

Pfam Domains

Protein Families

PS_Dcarbxylase

Protein Analysis

314

Amino Acids

35.2

Weight (kDa)

8.28

Isoelectric Point (pI)

43.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PS_Dcarbxylase	PF02666	141 - 310	1.1e-31	Phosphatidylserine decarboxylase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013544)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16700 AT4G16700
fragaria_vesca	FvH4_5g19150
malus_domestica	MD06G1055900.v1.1
prunus_persica	Prupe.5G066800_v2.0.a1 Prupe.5G066800_v2.0.a1 Prupe.5G066800_v2.0.a1
pyrus_communis	pycom06g04690
rosa_chinensis	RchiOBHm_Chr7g0203641
rosa_laevigata	RLG00000003513
rosa_multiflora	Rmu_sc0019220.1_g000001
rosa_roxburghii	Rroxscaffold_3G00253620
rosa_rugosa	Rorug07G0077900
rosa_samantha	Rh5CG208900 Rh7BG206800 Rh7CG219800 Rh7DG214400
rosa_wichuraiana	Rw7G018090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	530, 820
Acc36I	ACCTGC	2 cut(s)	530, 820
AccB7I	CCANNNNNTGG	1 cut(s)	487
AccI	GTMKAC	1 cut(s)	802
AccII	CGCG	1 cut(s)	69
AciI	CCGC	3 cut(s)	67, 84, 835
AclWI	GGATC	3 cut(s)	14, 27, 470
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	2 cut(s)	227, 321
AcuI	CTGAAG	1 cut(s)	45
AfaI	GTAC	3 cut(s)	438, 508, 513
AfiI	CCNNNNNNNGG	3 cut(s)	487, 503, 752
AflII	CTTAAG	1 cut(s)	262
AflIII	ACRYGT	1 cut(s)	343
AgsI	TTSAA	4 cut(s)	291, 378, 448, 781
AjiI	CACGTC	1 cut(s)	743
AjnI	CCWGG	3 cut(s)	356, 458, 784
AjuI	GAANNNNNNNTTGG	2 cut(s)	97, 129
AluBI	AGCT	3 cut(s)	44, 395, 623
AluI	AGCT	3 cut(s)	44, 395, 623
Alw21I	GWGCWC	1 cut(s)	166
Alw26I	GTCTC	1 cut(s)	334
AlwI	GGATC	3 cut(s)	14, 27, 470
Ama87I	CYCGRG	1 cut(s)	363
AoxI	GGCC	4 cut(s)	3, 461, 754, 936
ApeKI	GCWGC	2 cut(s)	271, 392
ApoI	RAATTY	2 cut(s)	227, 321
AspLEI	GCGC	3 cut(s)	71, 134, 282
AspS9I	GGNCC	2 cut(s)	64, 937
AsuC2I	CCSGG	1 cut(s)	129
AsuHPI	GGTGA	1 cut(s)	122
AvaI	CYCGRG	1 cut(s)	363
AvaII	GGWCC	1 cut(s)	64
BalI	TGGCCA	1 cut(s)	5
BamHI	GGATCC	1 cut(s)	19
BanII	GRGCYC	1 cut(s)	364
Bbv12I	GWGCWC	1 cut(s)	166
BbvI	GCAGC	2 cut(s)	258, 404
BccI	CCATC	1 cut(s)	497
BciT130I	CCWGG	3 cut(s)	358, 460, 786
BcnI	CCSGG	1 cut(s)	129
BcoDI	GTCTC	1 cut(s)	334
BfmI	CTRYAG	1 cut(s)	618
BfrI	CTTAAG	1 cut(s)	262
BfuAI	ACCTGC	2 cut(s)	530, 820
BisI	GCNGC	2 cut(s)	272, 393
BlsI	GCNGC	2 cut(s)	273, 394
Bme1390I	CCNGG	4 cut(s)	129, 358, 460, 786
Bme18I	GGWCC	1 cut(s)	64
BmeT110I	CYCGRG	1 cut(s)	363
BmgBI	CACGTC	1 cut(s)	743
BmgT120I	GGNCC	2 cut(s)	64, 937
BmiI	GGNNCC	4 cut(s)	21, 355, 457, 728
BmrFI	CCNGG	4 cut(s)	129, 358, 460, 786
BmsI	GCATC	2 cut(s)	144, 719
BpmI	CTGGAG	1 cut(s)	807
BpuMI	CCSGG	1 cut(s)	129
BsaBI	GATNNNNATC	1 cut(s)	795
BsaJI	CCNNGG	1 cut(s)	357
Bsc4I	CCNNNNNNNGG	3 cut(s)	487, 503, 752
Bse118I	RCCGGY	1 cut(s)	837
Bse1I	ACTGG	1 cut(s)	326
Bse8I	GATNNNNATC	1 cut(s)	795
BseBI	CCWGG	3 cut(s)	358, 460, 786
BseDI	CCNNGG	1 cut(s)	357
BseGI	GGATG	2 cut(s)	186, 412
BseJI	GATNNNNATC	1 cut(s)	795
BseLI	CCNNNNNNNGG	3 cut(s)	487, 503, 752
BseMII	CTCAG	1 cut(s)	750
BseNI	ACTGG	1 cut(s)	326
BseXI	GCAGC	2 cut(s)	258, 404
BseYI	CCCAGC	1 cut(s)	157
Bsh1236I	CGCG	1 cut(s)	69
BshFI	GGCC	4 cut(s)	5, 463, 756, 938
BsiHKAI	GWGCWC	1 cut(s)	166
BsiHKCI	CYCGRG	1 cut(s)	363
BsiSI	CCGG	2 cut(s)	129, 838
BslI	CCNNNNNNNGG	3 cut(s)	487, 503, 752
BsmAI	GTCTC	1 cut(s)	334
BsmI	GAATGC	1 cut(s)	368
BsnI	GGCC	4 cut(s)	5, 463, 756, 938
BsoBI	CYCGRG	1 cut(s)	363
Bsp1286I	GDGCHC	2 cut(s)	166, 364
Bsp143I	GATC	2 cut(s)	19, 475
BspACI	CCGC	3 cut(s)	67, 84, 835
BspANI	GGCC	4 cut(s)	5, 463, 756, 938
BspCNI	CTCAG	1 cut(s)	749
BspFNI	CGCG	1 cut(s)	69
BspLI	GGNNCC	4 cut(s)	21, 355, 457, 728
BspMI	ACCTGC	2 cut(s)	530, 820
BspPI	GGATC	3 cut(s)	14, 27, 470
BspTI	CTTAAG	1 cut(s)	262
BsrFI	RCCGGY	1 cut(s)	837
BsrI	ACTGG	1 cut(s)	326
BssAI	RCCGGY	1 cut(s)	837
BssECI	CCNNGG	1 cut(s)	357
BssMI	GATC	2 cut(s)	19, 475
BssNAI	GTATAC	1 cut(s)	803
Bst1107I	GTATAC	1 cut(s)	803
Bst2UI	CCWGG	3 cut(s)	358, 460, 786
Bst4CI	ACNGT	4 cut(s)	64, 139, 511, 767
Bst6I	CTCTTC	2 cut(s)	594, 671
BstAFI	CTTAAG	1 cut(s)	262
BstAPI	GCANNNNNTGC	1 cut(s)	662
BstC8I	GCNNGC	1 cut(s)	839
BstDEI	CTNAG	3 cut(s)	382, 515, 736
BstENI	CCTNNNNNAGG	1 cut(s)	750
BstF5I	GGATG	2 cut(s)	186, 412
BstFNI	CGCG	1 cut(s)	69
BstHHI	GCGC	3 cut(s)	71, 134, 282
BstKTI	GATC	2 cut(s)	22, 478
BstMAI	GTCTC	1 cut(s)	334
BstMBI	GATC	2 cut(s)	19, 475
BstMWI	GCNNNNNNNGC	4 cut(s)	140, 170, 277, 662
BstNI	CCWGG	3 cut(s)	358, 460, 786
BstNSI	RCATGY	3 cut(s)	173, 347, 809
BstSCI	CCNGG	4 cut(s)	127, 356, 458, 784
BstSFI	CTRYAG	1 cut(s)	618
BstUI	CGCG	1 cut(s)	69
BstV1I	GCAGC	2 cut(s)	258, 404
BstX2I	RGATCY	1 cut(s)	19
BstYI	RGATCY	1 cut(s)	19
BstZ17I	GTATAC	1 cut(s)	803
BsuRI	GGCC	4 cut(s)	5, 463, 756, 938
BtrI	CACGTC	1 cut(s)	743
BtsCI	GGATG	2 cut(s)	186, 412
BveI	ACCTGC	2 cut(s)	530, 820
Cac8I	GCNNGC	1 cut(s)	839
CfoI	GCGC	3 cut(s)	71, 134, 282
Cfr10I	RCCGGY	1 cut(s)	837
Cfr13I	GGNCC	2 cut(s)	64, 937
CpoI	CGGWCCG	1 cut(s)	64
Csp6I	GTAC	3 cut(s)	437, 507, 512
CspI	CGGWCCG	1 cut(s)	64
CviAII	CATG	8 cut(s)	34, 170, 193, 212, 344, 638, 690, 806
CviQI	GTAC	3 cut(s)	437, 507, 512
DdeI	CTNAG	3 cut(s)	382, 515, 736
DpnI	GATC	2 cut(s)	21, 477
DpnII	GATC	2 cut(s)	19, 475
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	2 cut(s)	594, 671
EarI	CTCTTC	2 cut(s)	594, 671
EciI	GGCGGA	2 cut(s)	99, 824
Eco147I	AGGCCT	2 cut(s)	463, 756
Eco24I	GRGCYC	1 cut(s)	364
Eco47I	GGWCC	1 cut(s)	64
Eco57I	CTGAAG	1 cut(s)	45
Eco88I	CYCGRG	1 cut(s)	363
EcoNI	CCTNNNNNAGG	1 cut(s)	750
EcoRII	CCWGG	3 cut(s)	356, 458, 784
EcoT22I	ATGCAT	1 cut(s)	639
EcoT38I	GRGCYC	1 cut(s)	364
FaeI	CATG	8 cut(s)	37, 173, 196, 215, 347, 641, 693, 809
FatI	CATG	8 cut(s)	33, 169, 192, 211, 343, 637, 689, 805
FblI	GTMKAC	1 cut(s)	802
Fnu4HI	GCNGC	2 cut(s)	272, 393
FokI	GGATG	2 cut(s)	193, 419
FriOI	GRGCYC	1 cut(s)	364
Fsp4HI	GCNGC	2 cut(s)	272, 393
GlaI	GCGC	3 cut(s)	70, 133, 281
GluI	GCNGC	2 cut(s)	272, 393
GsaI	CCCAGC	1 cut(s)	161
GsuI	CTGGAG	1 cut(s)	807
HaeIII	GGCC	4 cut(s)	5, 463, 756, 938
HapII	CCGG	2 cut(s)	129, 838
HhaI	GCGC	3 cut(s)	71, 134, 282
Hin1II	CATG	8 cut(s)	37, 173, 196, 215, 347, 641, 693, 809
Hin6I	GCGC	3 cut(s)	69, 132, 280
HinP1I	GCGC	3 cut(s)	69, 132, 280
HincII	GTYRAC	1 cut(s)	309
HindII	GTYRAC	1 cut(s)	309
HpaII	CCGG	2 cut(s)	129, 838
HphI	GGTGA	1 cut(s)	122
Hpy166II	GTNNAC	3 cut(s)	309, 341, 803
Hpy188I	TCNGA	2 cut(s)	180, 893
Hpy188III	TCNNGA	3 cut(s)	23, 291, 404
Hpy8I	GTNNAC	3 cut(s)	309, 341, 803
Hpy99I	CGWCG	1 cut(s)	180
HpyAV	CCTTC	3 cut(s)	190, 211, 446
HpyCH4III	ACNGT	4 cut(s)	64, 139, 511, 767
HpyCH4IV	ACGT	2 cut(s)	742, 874
HpyCH4V	TGCA	3 cut(s)	599, 637, 809
HpyF10VI	GCNNNNNNNGC	4 cut(s)	140, 170, 277, 662
HpyF3I	CTNAG	3 cut(s)	382, 515, 736
HpySE526I	ACGT	2 cut(s)	742, 874
Hsp92II	CATG	8 cut(s)	37, 173, 196, 215, 347, 641, 693, 809
HspAI	GCGC	3 cut(s)	69, 132, 280
KroI	GCCGGC	1 cut(s)	837
KroNI	GCCGGC	1 cut(s)	839
Kzo9I	GATC	2 cut(s)	19, 475
LmnI	GCTCC	3 cut(s)	287, 353, 536
Lsp1109I	GCAGC	2 cut(s)	258, 404
LweI	GCATC	2 cut(s)	144, 719
MaeII	ACGT	2 cut(s)	742, 874
MalI	GATC	2 cut(s)	21, 477
MboI	GATC	2 cut(s)	19, 475
MboII	GAAGA	5 cut(s)	38, 398, 581, 602, 688
MflI	RGATCY	1 cut(s)	19
MhlI	GDGCHC	2 cut(s)	166, 364
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	3 cut(s)	227, 321, 771
MluNI	TGGCCA	1 cut(s)	5
MmeI	TCCRAC	1 cut(s)	158
MnlI	CCTC	6 cut(s)	30, 181, 199, 285, 411, 613
Mox20I	TGGCCA	1 cut(s)	5
Mph1103I	ATGCAT	1 cut(s)	639
MroNI	GCCGGC	1 cut(s)	837
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	2 cut(s)	263, 531
MslI	CAYNNNNRTG	1 cut(s)	348
Msp20I	TGGCCA	1 cut(s)	5
MspCI	CTTAAG	1 cut(s)	262
MspI	CCGG	2 cut(s)	129, 838
MspR9I	CCNGG	4 cut(s)	129, 358, 460, 786
Mva1269I	GAATGC	1 cut(s)	368
MvaI	CCWGG	3 cut(s)	358, 460, 786
MvnI	CGCG	1 cut(s)	69
MwoI	GCNNNNNNNGC	4 cut(s)	140, 170, 277, 662
NaeI	GCCGGC	1 cut(s)	839
NciI	CCSGG	1 cut(s)	129
NdeII	GATC	2 cut(s)	19, 475
NgoMIV	GCCGGC	1 cut(s)	837
NlaIII	CATG	8 cut(s)	37, 173, 196, 215, 347, 641, 693, 809
NlaIV	GGNNCC	4 cut(s)	21, 355, 457, 728
NsiI	ATGCAT	1 cut(s)	639
NspI	RCATGY	3 cut(s)	173, 347, 809
PaeR7I	CTCGAG	1 cut(s)	363
PaqCI	CACCTGC	2 cut(s)	530, 820
PceI	AGGCCT	2 cut(s)	463, 756
PciI	ACATGT	1 cut(s)	343
PctI	GAATGC	1 cut(s)	368
PdiI	GCCGGC	1 cut(s)	839
PflMI	CCANNNNNTGG	1 cut(s)	487
PkrI	GCNGC	2 cut(s)	273, 394
PscI	ACATGT	1 cut(s)	343
Psp6I	CCWGG	3 cut(s)	356, 458, 784
PspFI	CCCAGC	1 cut(s)	157
PspGI	CCWGG	3 cut(s)	356, 458, 784
PspN4I	GGNNCC	4 cut(s)	21, 355, 457, 728
PspPI	GGNCC	2 cut(s)	64, 937
PspXI	VCTCGAGB	1 cut(s)	363
PsuI	RGATCY	1 cut(s)	19
RsaI	GTAC	3 cut(s)	438, 508, 513
RsaNI	GTAC	3 cut(s)	437, 507, 512
RseI	CAYNNNNRTG	1 cut(s)	348
Rsr2I	CGGWCCG	1 cut(s)	64
RsrII	CGGWCCG	1 cut(s)	64
SaqAI	TTAA	2 cut(s)	263, 531
SatI	GCNGC	2 cut(s)	272, 393
Sau3AI	GATC	2 cut(s)	19, 475
Sau96I	GGNCC	2 cut(s)	64, 937
ScrFI	CCNGG	4 cut(s)	129, 358, 460, 786
SduI	GDGCHC	2 cut(s)	166, 364
SfaNI	GCATC	2 cut(s)	144, 719
SfcI	CTRYAG	1 cut(s)	618
Sfr274I	CTCGAG	1 cut(s)	363
SinI	GGWCC	1 cut(s)	64
SlaI	CTCGAG	1 cut(s)	363
SmiMI	CAYNNNNRTG	1 cut(s)	348
SmlI	CTYRAG	2 cut(s)	262, 363
SmoI	CTYRAG	2 cut(s)	262, 363
Sse9I	AATT	3 cut(s)	227, 321, 771
SseBI	AGGCCT	2 cut(s)	463, 756
SsiI	CCGC	3 cut(s)	67, 84, 835
SspI	AATATT	1 cut(s)	826
StuI	AGGCCT	2 cut(s)	463, 756
StyD4I	CCNGG	4 cut(s)	127, 356, 458, 784
TaaI	ACNGT	4 cut(s)	64, 139, 511, 767
TaiI	ACGT	2 cut(s)	745, 877
TaqI	TCGA	2 cut(s)	364, 501
TasI	AATT	3 cut(s)	227, 321, 771
TatI	WGTACW	1 cut(s)	511
Tru1I	TTAA	2 cut(s)	263, 531
Tru9I	TTAA	2 cut(s)	263, 531
TseI	GCWGC	2 cut(s)	271, 392
TspDTI	ATGAA	5 cut(s)	209, 423, 764, 885, 927
Van91I	CCANNNNNTGG	1 cut(s)	487
Vha464I	CTTAAG	1 cut(s)	262
VpaK11BI	GGWCC	1 cut(s)	64
XagI	CCTNNNNNAGG	1 cut(s)	750
XapI	RAATTY	2 cut(s)	227, 321
XceI	RCATGY	3 cut(s)	173, 347, 809
XhoI	CTCGAG	1 cut(s)	363
XmiI	GTMKAC	1 cut(s)	802
Zsp2I	ATGCAT	1 cut(s)	639

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.