Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0012180

Physical Location & Seq

Genomic Coordinates Reverse (-)

12694528 .. 12702196

Gene Structure 7669 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g21130.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2229 bp

ATGCGCGCCTTGTTTTTCAGACCCACCAAGTTTATACTGTTCAAAACTGTAATTAGATTTCGATTCTATGAAACCCAGATAGCAAAACTCAGTTGTGATGATTCAGAGCTGCTTTGGTACTTATCAAAAGGTTTGGTTAAAGATGCACGCCAGGTGCTTGAGAAAATGCCTAGCAGAAGAGATGCTCATGGCCGCGTTGTTGATTGGACTTGTTTGGTTACCAAGTACTCGAGAGGCGGCTGGGTGGATGAGGCTCGGGTGCTGTTTGATATAATGCCGGAGAGGAATGTGGTTAGTTATAATGCGATGCTGTCGGGGTATTTGCGGTCGGGGAGGTTGAGTGAGGGGTGTAGGTTTTTTGAGGAGATGCCGGAGAAGAATGTGGTGTCGTGGACTTTGGTGTTGTGTGGGCTGGCTGATGCGGGGAGGGTTGAAGAGGCGAGGCGGTTGTTTGAGGCAATGCCGGAGAGGAATATTGTGTCGTGGAATTCGATGATTGGTGGGTTGGTTAAGAATGGGGATGTGGAAGGAGCGAGGGAGGTTTTTGAGAGGATGCCGGTGAAGAATGTTGTTTCATGTAATGTGATGATTGGGGGGTATGTGGAGCGGTGTAGGATGGATGAGGCGAGAGGTTTGTTTGATGGGATGGTGGAGAGGAATGTGATAACTTGGACTAGCATGGTATCTGGTTATTGTAGGTCTGGCAATGTGGATGAAGGGTATGCTTTGTTTCGGGAAATGCCTGAGAGGAATGTTGTTTCTTGGACAGCCATGATCGGTGGCTTTTCTTGGAATGGATTTTGTAAAGAAGCTCTATTGCTGTTCCTTGAAATGAAGGGGGACTATGGGACAAAACCAAACGGTGAGACCTTCATATCGCTTGTGTATGCTTGTGCCGGTATTGGGGTGCCTCAGCTTGGAATGCAACTGCATGCTCAGTTGATTGTCAACAATTGGGACCATGATGATTATGGTGGCAGGCTGTCAAAGGGCCTGATTCACATGTACTCGGCCTATGGTATCATGGATTATGCAGACTTTCTGTTTATGAAGCACTCAAATACTCATAGTGTTCAGTCTTGTAATTCTATGATCAATGGTTACATACATATTGGGAAACTAGAACAGGCTCAGAACCTCTTTGACAGACTACCAATCCGAGACAAGATCTCTTGGACTTCTATGATCACAGGGTATTTTAGTGTTGGGGAAGTATCAAAGGCTTGTTATCTGTTCCAAATTATGCCAGATAAGGATGCTATTTCATGGACAGCGATGATTTCAGGGCACATCCAAAATGAGCTTTTTGCAGAAGCCACTGATATCTTCTTTAAAATGCGTTCAGAAGGTGTTTCGCCTCTGAGTTCAACATATTCAGTTCTTCTTGGAGCAGCTGGTGCAATGTCATATCTTGATTCTGGAAGACAGTTCCATGGCCTTCTGACAAAAACACATTATGAACTTGACTTGTTTATTAGTAACTCACTGATCTCAATGTATGCCAAATGTGGGGAAATAGATGATGCTTACCGTGCATTCTCTAACATGAGTTTCCGGGATTTGATTTCTTGGAATTCCATGATCATGGGGTTTTCAGACCATGGGCTTACAGATAAAACTCTGAAGATCTTTGAAGCAATGGTGCAATCTGGAACACAGCCGAACTCAGTAACTTTTCTGGGCATCCTGTCAGCATGTAGCCATGCAGGGCTAGTCCATAAAGGATGGGAGTTTATTAATGCCATGAGTGATGTTTATGGAATTCAGCCAGCTCCGGAGCATTGCATCTGTATGATTAATCTTTTGGGCAGAGCTGGGAAGGTAAAGGAAGCCCAAGAATTGGTTAGGAGGCTACCTTTCAAACCAGATCATGCTGTTTGGGGAGCATTGCTTGGTATTTGTGGGTTCGGTAAAACGAATCCCCAGGTTGCTAAATATGCTGCAAAACAACTCCTGGAGATGGATCCTTTAAATGCACCAGCCCATGTGGTCCTTTGTAACATATATTCAGCAAATGGTCTGCATATTGAGGAAAAAGCTCTGAGAAGGGAGATGGGGTTGAAAGGAGTGAGAAAGGTTCCTGGCTGCAGTTGGATTCTAGTGCAAGGGAGAGTTAATGTATTCCTCTCTGGAGATATATTACACCCAGATGTCGGTGAGATGCTGTTAGTGCTATTTGGCAATATGAGTGAATCACAAAAAGAGTCCAGTACAGTTCTTTATGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR

Protein Analysis

743

Amino Acids

83.29

Weight (kDa)

6.67

Isoelectric Point (pI)

38.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	95 - 128	9.5e-08	PPR repeat family
PPR	PF01535	98 - 128	2.7e-07	PPR repeat
PPR_2	PF13041	157 - 190	6.6e-07	PPR repeat family
PPR	PF01535	160 - 189	2.3e-08	PPR repeat
PPR_2	PF13041	188 - 221	2.7e-06	PPR repeat family
PPR_1	PF12854	217 - 247	1.5e-10	PPR repeat
PPR_2	PF13041	219 - 252	1.2e-07	PPR repeat family
PPR	PF01535	222 - 252	2.5e-09	PPR repeat
PPR_2	PF13041	250 - 299	1.2e-06	PPR repeat family
PPR	PF01535	253 - 280	3.2e-06	PPR repeat
PPR_2	PF13041	419 - 464	2.5e-07	PPR repeat family
PPR_2	PF13041	520 - 567	1.8e-09	PPR repeat family
E_motif	PF20431	642 - 699	1.1e-12	E motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012180)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G32415
fragaria_vesca	FvH4_5g21130 FvH4_5g21130 FvH4_5g21130
malus_domestica	MD06G1040900.v1.1
prunus_persica	Prupe.5G047200_v2.0.a1
pyrus_communis	pycom06g03410
rosa_chinensis	RchiOBHm_Chr7g0208251
rosa_laevigata	RLG00000003235
rosa_multiflora	Rmu_sc0000841.1_g000023 Rmu_sc0000841.1_g000024 Rmu_sc0007869.1_g000019
rosa_roxburghii	Rroxscaffold_3G00250640
rosa_rugosa	Rorug07G0102500
rosa_samantha	Rh7AG236700 Rh7BG232300 Rh7CG252600 Rh7DG242700
rosa_wichuraiana	Rw7G020200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	300
AccB1I	GGYRCC	1 cut(s)	907
AccB7I	CCANNNNNTGG	1 cut(s)	1840
AccBSI	CCGCTC	1 cut(s)	607
AccII	CGCG	2 cut(s)	6, 195
AccIII	TCCGGA	1 cut(s)	1774
AciI	CCGC	6 cut(s)	193, 237, 325, 422, 445, 607
AclWI	GGATC	2 cut(s)	1958, 1971
AcoI	YGGCCR	1 cut(s)	190
AcsI	RAATTY	3 cut(s)	487, 1573, 1761
AcuI	CTGAAG	1 cut(s)	1643
AfaI	GTAC	4 cut(s)	119, 227, 1007, 2212
AfiI	CCNNNNNNNGG	6 cut(s)	903, 917, 1509, 1840, 1960, 2153
AflIII	ACRYGT	1 cut(s)	1002
AgsI	TTSAA	7 cut(s)	43, 434, 830, 1368, 1634, 1861, 2062
AjnI	CCWGG	4 cut(s)	150, 1923, 1953, 2080
AluBI	AGCT	8 cut(s)	109, 812, 916, 1303, 1394, 1772, 1814, 2039
AluI	AGCT	8 cut(s)	109, 812, 916, 1303, 1394, 1772, 1814, 2039
Alw26I	GTCTC	2 cut(s)	860, 1155
AlwI	GGATC	2 cut(s)	1958, 1971
Ama87I	CYCGRG	2 cut(s)	229, 255
Aor13HI	TCCGGA	1 cut(s)	1774
AoxI	GGCC	4 cut(s)	190, 991, 1011, 1435
ApeKI	GCWGC	4 cut(s)	109, 1391, 1940, 2085
ApoI	RAATTY	3 cut(s)	487, 1573, 1761
AseI	ATTAAT	2 cut(s)	1737, 1797
AspLEI	GCGC	2 cut(s)	6, 8
AspS9I	GGNCC	3 cut(s)	958, 991, 1990
AsuC2I	CCSGG	1 cut(s)	1556
AsuHPI	GGTGA	3 cut(s)	571, 875, 2168
AvaI	CYCGRG	2 cut(s)	229, 255
AvaII	GGWCC	2 cut(s)	958, 1990
BaeGI	GKGCMC	1 cut(s)	1290
BamHI	GGATCC	1 cut(s)	1963
BanI	GGYRCC	1 cut(s)	907
BbsI	GAAGAC	1 cut(s)	1429
BbvCI	CCTCAGC	1 cut(s)	912
BbvI	GCAGC	4 cut(s)	96, 1403, 1927, 2072
BccI	CCATC	6 cut(s)	610, 635, 640, 1719, 1954, 2047
BciT130I	CCWGG	4 cut(s)	152, 1925, 1955, 2082
BclI	TGATCA	3 cut(s)	1092, 1185, 1581
BcnI	CCSGG	1 cut(s)	1556
BcoDI	GTCTC	2 cut(s)	860, 1155
BfaI	CTAG	5 cut(s)	171, 675, 1121, 1712, 2099
BfmI	CTRYAG	1 cut(s)	2086
BglII	AGATCT	2 cut(s)	1167, 1626
BisI	GCNGC	6 cut(s)	110, 193, 238, 1392, 1941, 2086
BlsI	GCNGC	6 cut(s)	111, 194, 239, 1393, 1942, 2087
BmcAI	AGTACT	1 cut(s)	227
Bme1390I	CCNGG	5 cut(s)	152, 1556, 1925, 1955, 2082
Bme18I	GGWCC	2 cut(s)	958, 1990
BmeT110I	CYCGRG	2 cut(s)	229, 255
BmgT120I	GGNCC	3 cut(s)	958, 991, 1990
BmiI	GGNNCC	4 cut(s)	909, 959, 1965, 2079
BmrFI	CCNGG	5 cut(s)	152, 1556, 1925, 1955, 2082
BpiI	GAAGAC	1 cut(s)	1429
BpmI	CTGGAG	2 cut(s)	1976, 2151
Bpu10I	CCTNAGC	1 cut(s)	912
BpuEI	CTTGAG	1 cut(s)	179
BpuMI	CCSGG	1 cut(s)	1556
BsaI	GGTCTC	1 cut(s)	860
BsaJI	CCNNGG	3 cut(s)	1432, 1600, 1923
BsaWI	WCCGGW	1 cut(s)	1774
BsaXI	ACNNNNNCTCC	4 cut(s)	325, 355, 2042, 2072
Bsc4I	CCNNNNNNNGG	6 cut(s)	903, 917, 1509, 1840, 1960, 2153
Bse118I	RCCGGY	2 cut(s)	556, 896
Bse1I	ACTGG	1 cut(s)	2208
Bse3DI	GCAATG	6 cut(s)	465, 712, 1407, 1644, 1780, 1886
BseAI	TCCGGA	1 cut(s)	1774
BseBI	CCWGG	4 cut(s)	152, 1925, 1955, 2082
BseDI	CCNNGG	3 cut(s)	1432, 1600, 1923
BseLI	CCNNNNNNNGG	6 cut(s)	903, 917, 1509, 1840, 1960, 2153
BseMI	GCAATG	6 cut(s)	465, 712, 1407, 1644, 1780, 1886
BseMII	CTCAG	8 cut(s)	103, 735, 926, 950, 1145, 1352, 1680, 2033
BseNI	ACTGG	1 cut(s)	2208
BsePI	GCGCGC	1 cut(s)	4
BseRI	GAGGAG	1 cut(s)	377
BseSI	GKGCMC	1 cut(s)	1290
BseXI	GCAGC	4 cut(s)	96, 1403, 1927, 2072
BseYI	CCCAGC	2 cut(s)	240, 1814
Bsh1236I	CGCG	2 cut(s)	6, 195
Bsh1285I	CGRYCG	1 cut(s)	329
BshFI	GGCC	4 cut(s)	192, 993, 1013, 1437
BshNI	GGYRCC	1 cut(s)	907
BsiEI	CGRYCG	1 cut(s)	329
BsiHKCI	CYCGRG	2 cut(s)	229, 255
BsiSI	CCGG	7 cut(s)	278, 371, 464, 557, 897, 1555, 1775
BslFI	GGGAC	3 cut(s)	854, 862, 971
BslI	CCNNNNNNNGG	6 cut(s)	903, 917, 1509, 1840, 1960, 2153
BsmAI	GTCTC	2 cut(s)	860, 1155
BsmFI	GGGAC	3 cut(s)	854, 862, 971
BsmI	GAATGC	2 cut(s)	927, 1535
BsnI	GGCC	4 cut(s)	192, 993, 1013, 1437
Bso31I	GGTCTC	1 cut(s)	860
BsoBI	CYCGRG	2 cut(s)	229, 255
Bsp1286I	GDGCHC	1 cut(s)	1290
Bsp13I	TCCGGA	1 cut(s)	1774
Bsp143I	GATC	9 cut(s)	774, 1092, 1167, 1185, 1488, 1581, 1626, 1867, 1963
Bsp19I	CCATGG	2 cut(s)	1432, 1600
BspACI	CCGC	6 cut(s)	193, 237, 325, 422, 445, 607
BspANI	GGCC	4 cut(s)	192, 993, 1013, 1437
BspCNI	CTCAG	8 cut(s)	102, 736, 925, 949, 1144, 1353, 1679, 2034
BspEI	TCCGGA	1 cut(s)	1774
BspFNI	CGCG	2 cut(s)	6, 195
BspLI	GGNNCC	4 cut(s)	909, 959, 1965, 2079
BspMAI	CTGCAG	1 cut(s)	2090
BspPI	GGATC	2 cut(s)	1958, 1971
BspT107I	GGYRCC	1 cut(s)	907
BspTNI	GGTCTC	1 cut(s)	860
BsrBI	CCGCTC	1 cut(s)	607
BsrDI	GCAATG	6 cut(s)	465, 712, 1407, 1644, 1780, 1886
BsrFI	RCCGGY	2 cut(s)	556, 896
BsrI	ACTGG	1 cut(s)	2208
BssAI	RCCGGY	2 cut(s)	556, 896
BssECI	CCNNGG	3 cut(s)	1432, 1600, 1923
BssHII	GCGCGC	1 cut(s)	4
BssMI	GATC	9 cut(s)	774, 1092, 1167, 1185, 1488, 1581, 1626, 1867, 1963
BssT1I	CCWWGG	2 cut(s)	1432, 1600
Bst2UI	CCWGG	4 cut(s)	152, 1925, 1955, 2082
Bst4CI	ACNGT	6 cut(s)	39, 49, 863, 1428, 1532, 2215
Bst6I	CTCTTC	2 cut(s)	172, 429
BstAPI	GCANNNNNTGC	1 cut(s)	1397
BstC8I	GCNNGC	6 cut(s)	6, 148, 414, 933, 980, 1770
BstDEI	CTNAG	8 cut(s)	89, 744, 912, 936, 1131, 1361, 1666, 2042
BstDSI	CCRYGG	2 cut(s)	1432, 1600
BstEII	GGTNACC	1 cut(s)	217
BstFNI	CGCG	2 cut(s)	6, 195
BstHHI	GCGC	2 cut(s)	6, 8
BstKTI	GATC	9 cut(s)	777, 1095, 1170, 1188, 1491, 1584, 1629, 1870, 1966
BstMAI	GTCTC	2 cut(s)	860, 1155
BstMBI	GATC	9 cut(s)	774, 1092, 1167, 1185, 1488, 1581, 1626, 1867, 1963
BstMCI	CGRYCG	1 cut(s)	329
BstMWI	GCNNNNNNNGC	5 cut(s)	922, 1397, 1532, 1937, 2170
BstNI	CCWGG	4 cut(s)	152, 1925, 1955, 2082
BstNSI	RCATGY	3 cut(s)	935, 1006, 1698
BstPI	GGTNACC	1 cut(s)	217
BstSCI	CCNGG	5 cut(s)	150, 1554, 1923, 1953, 2080
BstSFI	CTRYAG	1 cut(s)	2086
BstSLI	GKGCMC	1 cut(s)	1290
BstUI	CGCG	2 cut(s)	6, 195
BstV1I	GCAGC	4 cut(s)	96, 1403, 1927, 2072
BstV2I	GAAGAC	1 cut(s)	1429
BstX2I	RGATCY	3 cut(s)	1167, 1626, 1963
BstXI	CCANNNNNNTGG	1 cut(s)	1585
BstYI	RGATCY	3 cut(s)	1167, 1626, 1963
BsuRI	GGCC	4 cut(s)	192, 993, 1013, 1437
BtgI	CCRYGG	2 cut(s)	1432, 1600
BtgZI	GCGATG	2 cut(s)	320, 1289
BtsIMutI	CAGTG	2 cut(s)	1317, 1484
Cac8I	GCNNGC	6 cut(s)	6, 148, 414, 933, 980, 1770
CfoI	GCGC	2 cut(s)	6, 8
Cfr10I	RCCGGY	2 cut(s)	556, 896
Cfr13I	GGNCC	3 cut(s)	958, 991, 1990
Csp6I	GTAC	4 cut(s)	118, 226, 1006, 2211
CviQI	GTAC	4 cut(s)	118, 226, 1006, 2211
DdeI	CTNAG	8 cut(s)	89, 744, 912, 936, 1131, 1361, 1666, 2042
DpnI	GATC	9 cut(s)	776, 1094, 1169, 1187, 1490, 1583, 1628, 1869, 1965
DpnII	GATC	9 cut(s)	774, 1092, 1167, 1185, 1488, 1581, 1626, 1867, 1963
DraI	TTTAAA	2 cut(s)	1333, 1971
EaeI	YGGCCR	1 cut(s)	190
Eam1104I	CTCTTC	2 cut(s)	172, 429
EarI	CTCTTC	2 cut(s)	172, 429
Eco130I	CCWWGG	2 cut(s)	1432, 1600
Eco31I	GGTCTC	1 cut(s)	860
Eco32I	GATATC	1 cut(s)	1324
Eco47I	GGWCC	2 cut(s)	958, 1990
Eco57I	CTGAAG	1 cut(s)	1643
Eco88I	CYCGRG	2 cut(s)	229, 255
Eco91I	GGTNACC	1 cut(s)	217
EcoO109I	RGGNCCY	1 cut(s)	991
EcoO65I	GGTNACC	1 cut(s)	217
EcoRI	GAATTC	3 cut(s)	487, 1573, 1761
EcoRII	CCWGG	4 cut(s)	150, 1923, 1953, 2080
EcoRV	GATATC	1 cut(s)	1324
EcoT14I	CCWWGG	2 cut(s)	1432, 1600
ErhI	CCWWGG	2 cut(s)	1432, 1600
FaqI	GGGAC	3 cut(s)	854, 862, 971
FauI	CCCGC	1 cut(s)	415
FbaI	TGATCA	3 cut(s)	1092, 1185, 1581
Fnu4HI	GCNGC	6 cut(s)	110, 193, 238, 1392, 1941, 2086
Fsp4HI	GCNGC	6 cut(s)	110, 193, 238, 1392, 1941, 2086
FspBI	CTAG	5 cut(s)	171, 675, 1121, 1712, 2099
GlaI	GCGC	2 cut(s)	5, 7
GluI	GCNGC	6 cut(s)	110, 193, 238, 1392, 1941, 2086
GsaI	CCCAGC	2 cut(s)	244, 1818
GsuI	CTGGAG	2 cut(s)	1976, 2151
HaeIII	GGCC	4 cut(s)	192, 993, 1013, 1437
HapII	CCGG	7 cut(s)	278, 371, 464, 557, 897, 1555, 1775
HhaI	GCGC	2 cut(s)	6, 8
Hin6I	GCGC	2 cut(s)	4, 6
HinP1I	GCGC	2 cut(s)	4, 6
HincII	GTYRAC	1 cut(s)	949
HindII	GTYRAC	1 cut(s)	949
HinfI	GANTC	8 cut(s)	63, 101, 997, 1415, 1918, 2095, 2192, 2204
HpaII	CCGG	7 cut(s)	278, 371, 464, 557, 897, 1555, 1775
HphI	GGTGA	3 cut(s)	571, 875, 2168
Hpy166II	GTNNAC	2 cut(s)	393, 949
Hpy188III	TCNNGA	7 cut(s)	231, 734, 1412, 1419, 1650, 1775, 2130
Hpy8I	GTNNAC	2 cut(s)	393, 949
HpyAV	CCTTC	8 cut(s)	521, 710, 829, 880, 1340, 1448, 1813, 2040
HpyCH4III	ACNGT	6 cut(s)	39, 49, 863, 1428, 1532, 2215
HpyF10VI	GCNNNNNNNGC	5 cut(s)	922, 1397, 1532, 1937, 2170
HpyF3I	CTNAG	8 cut(s)	89, 744, 912, 936, 1131, 1361, 1666, 2042
HspAI	GCGC	2 cut(s)	4, 6
Kpn2I	TCCGGA	1 cut(s)	1774
Ksp22I	TGATCA	3 cut(s)	1092, 1185, 1581
Kzo9I	GATC	9 cut(s)	774, 1092, 1167, 1185, 1488, 1581, 1626, 1867, 1963
LmnI	GCTCC	6 cut(s)	530, 604, 1388, 1777, 1777, 1883
Lsp1109I	GCAGC	4 cut(s)	96, 1403, 1927, 2072
MaeI	CTAG	5 cut(s)	171, 675, 1121, 1712, 2099
MaeIII	GTNAC	5 cut(s)	217, 1100, 1478, 1669, 1997
MalI	GATC	9 cut(s)	776, 1094, 1169, 1187, 1490, 1583, 1628, 1869, 1965
MbiI	CCGCTC	1 cut(s)	607
MboI	GATC	9 cut(s)	774, 1092, 1167, 1185, 1488, 1581, 1626, 1867, 1963
MboII	GAAGA	8 cut(s)	189, 388, 446, 574, 1318, 1373, 1434, 1636
MfeI	CAATTG	1 cut(s)	952
MflI	RGATCY	3 cut(s)	1167, 1626, 1963
MhlI	GDGCHC	1 cut(s)	1290
MluCI	AATT	8 cut(s)	51, 487, 952, 1084, 1239, 1573, 1761, 1838
MlyI	GAGTC	1 cut(s)	2213
MmeI	TCCRAC	1 cut(s)	2072
MroI	TCCGGA	1 cut(s)	1774
MseI	TTAA	7 cut(s)	138, 510, 1332, 1737, 1797, 1970, 2115
MslI	CAYNNNNRTG	3 cut(s)	1583, 1790, 2148
MspA1I	CMGCKG	1 cut(s)	1394
MspI	CCGG	7 cut(s)	278, 371, 464, 557, 897, 1555, 1775
MspR9I	CCNGG	5 cut(s)	152, 1556, 1925, 1955, 2082
MunI	CAATTG	1 cut(s)	952
Mva1269I	GAATGC	2 cut(s)	927, 1535
MvaI	CCWGG	4 cut(s)	152, 1925, 1955, 2082
MvnI	CGCG	2 cut(s)	6, 195
MwoI	GCNNNNNNNGC	5 cut(s)	922, 1397, 1532, 1937, 2170
NciI	CCSGG	1 cut(s)	1556
NcoI	CCATGG	2 cut(s)	1432, 1600
NdeII	GATC	9 cut(s)	774, 1092, 1167, 1185, 1488, 1581, 1626, 1867, 1963
NlaIV	GGNNCC	4 cut(s)	909, 959, 1965, 2079
NmeAIII	GCCGAG	1 cut(s)	989
NspI	RCATGY	3 cut(s)	935, 1006, 1698
PaeI	GCATGC	1 cut(s)	935
PaeR7I	CTCGAG	1 cut(s)	229
PauI	GCGCGC	1 cut(s)	4
PciI	ACATGT	1 cut(s)	1002
PcsI	WCGNNNNNNNCGW	1 cut(s)	488
PctI	GAATGC	2 cut(s)	927, 1535
PfeI	GAWTC	7 cut(s)	63, 101, 997, 1415, 1918, 2095, 2192
PflMI	CCANNNNNTGG	1 cut(s)	1840
PfoI	TCCNGGA	2 cut(s)	1554, 1953
PkrI	GCNGC	6 cut(s)	111, 194, 239, 1393, 1942, 2087
PleI	GAGTC	1 cut(s)	2212
PpsI	GAGTC	1 cut(s)	2212
PscI	ACATGT	1 cut(s)	1002
PshBI	ATTAAT	2 cut(s)	1737, 1797
PsiI	TTATAA	1 cut(s)	300
Psp6I	CCWGG	4 cut(s)	150, 1923, 1953, 2080
PspEI	GGTNACC	1 cut(s)	217
PspFI	CCCAGC	2 cut(s)	240, 1814
PspGI	CCWGG	4 cut(s)	150, 1923, 1953, 2080
PspN4I	GGNNCC	4 cut(s)	909, 959, 1965, 2079
PspPI	GGNCC	3 cut(s)	958, 991, 1990
PstI	CTGCAG	1 cut(s)	2090
PsuI	RGATCY	3 cut(s)	1167, 1626, 1963
PteI	GCGCGC	1 cut(s)	4
PvuII	CAGCTG	1 cut(s)	1394
RsaI	GTAC	4 cut(s)	119, 227, 1007, 2212
RsaNI	GTAC	4 cut(s)	118, 226, 1006, 2211
RseI	CAYNNNNRTG	3 cut(s)	1583, 1790, 2148
SaqAI	TTAA	7 cut(s)	138, 510, 1332, 1737, 1797, 1970, 2115
SatI	GCNGC	6 cut(s)	110, 193, 238, 1392, 1941, 2086
Sau3AI	GATC	9 cut(s)	774, 1092, 1167, 1185, 1488, 1581, 1626, 1867, 1963
Sau96I	GGNCC	3 cut(s)	958, 991, 1990
ScaI	AGTACT	1 cut(s)	227
SchI	GAGTC	1 cut(s)	2213
ScrFI	CCNGG	5 cut(s)	152, 1556, 1925, 1955, 2082
SduI	GDGCHC	1 cut(s)	1290
SfcI	CTRYAG	1 cut(s)	2086
Sfr274I	CTCGAG	1 cut(s)	229
SinI	GGWCC	2 cut(s)	958, 1990
SlaI	CTCGAG	1 cut(s)	229
SmiMI	CAYNNNNRTG	3 cut(s)	1583, 1790, 2148
SmlI	CTYRAG	2 cut(s)	158, 229
SmoI	CTYRAG	2 cut(s)	158, 229
SphI	GCATGC	1 cut(s)	935
Sse9I	AATT	8 cut(s)	51, 487, 952, 1084, 1239, 1573, 1761, 1838
SsiI	CCGC	6 cut(s)	193, 237, 325, 422, 445, 607
SspI	AATATT	1 cut(s)	475
SspMI	CTAG	5 cut(s)	171, 675, 1121, 1712, 2099
StyD4I	CCNGG	5 cut(s)	150, 1554, 1923, 1953, 2080
StyI	CCWWGG	2 cut(s)	1432, 1600
TaaI	ACNGT	6 cut(s)	39, 49, 863, 1428, 1532, 2215
TaqI	TCGA	3 cut(s)	61, 230, 491
TasI	AATT	8 cut(s)	51, 487, 952, 1084, 1239, 1573, 1761, 1838
TatI	WGTACW	3 cut(s)	225, 1005, 2210
TauI	GCSGC	2 cut(s)	195, 240
TfiI	GAWTC	7 cut(s)	63, 101, 997, 1415, 1918, 2095, 2192
Tru1I	TTAA	7 cut(s)	138, 510, 1332, 1737, 1797, 1970, 2115
Tru9I	TTAA	7 cut(s)	138, 510, 1332, 1737, 1797, 1970, 2115
TscAI	CASTG	2 cut(s)	1324, 1491
TseI	GCWGC	4 cut(s)	109, 1391, 1940, 2085
TspDTI	ATGAA	8 cut(s)	84, 564, 729, 848, 862, 1064, 1254, 1473
TspRI	CASTG	2 cut(s)	1324, 1491
Van91I	CCANNNNNTGG	1 cut(s)	1840
VpaK11BI	GGWCC	2 cut(s)	958, 1990
VspI	ATTAAT	2 cut(s)	1737, 1797
XapI	RAATTY	3 cut(s)	487, 1573, 1761
XceI	RCATGY	3 cut(s)	935, 1006, 1698
XcmI	CCANNNNNNNNNTGG	1 cut(s)	968
XhoI	CTCGAG	1 cut(s)	229
XspI	CTAG	5 cut(s)	171, 675, 1121, 1712, 2099
ZrmI	AGTACT	1 cut(s)	227

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.