Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0012180

Physical Location & Seq

Genomic Coordinates Forward (+)

5214593 .. 5216830

Gene Structure 2238 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1040900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2238 bp

ATGCGCGCCTCATTTTATAAGCCCTTCCGTTTTGGTCTGTCAGAAAACTTAATCAGAATTGGCTCCGGCAATTTCTTTTGCCGATGTTTTAAAACCCAGATTCCATTTTCGAGAACCCATTATGCTAAACTCACTCCCGACGATTCCCAGCTTCTTCACTGTCTTTCTCAAGGTCGGTGCCAAGACGCACGTAAGCTGCTTGAGAAATTGCCTGAGAGAAGCAGCCATGGCCGCGTTGTTCACTGGACTTGTTTGCTCACGAAATACTCGAGGAGTGGCTGGGTCGATGAGGCACGGATGCTCTTTGATATCATGCCTGAGAAGAACATTGTTTCTTACAATGCAATGCTGTCTGGGTATGTGCAATCTGGGAGGTTGAATGAGGGCTGGCGATTCTTTTATGAGATGCCAGAGAGAAATGTTGTTTCCTGGACTTCAATGCTCTGTGGGTTTGCGGATGCGGGGAGGATTGACGAGGCAAGGCAGTTGTTTGATGCGATGCCAGAGAGGAATGTTGTTTCTTGGAATTCGATGATGGCTGGGTTGATTAAGAATGGGGATTTGGAGGGAGCAAGGCAGGTTTTTGACCAAATGCCGACGAAGAATGTTGTTTCTTGGAATGCTATGATTTCTGGGTATGCTGAGAATTGTAGAATGGACGAAGCAAGAGTTTTGTTTGATGAGATGCTCGATAGGAATGTGATTACTTGGACTAGCATGATATCCGGTTACTGTCGGTCTGGCCATGTGGATGAGGGATACTCTTTGTTTGAAAAAACGCCTGAGAGGAATGTTGTTTCTTGGACAGCCATGATTGGTGGCTTTGCTTGGAATGGCTTCTATAAAGTAGCTCTATTGCTATTTCTTGAACTGAAGGGGAACTACGACACAAAACCAAACGGAGAGACCTTCATATCGCTTGTTTATGCTTGTGCGGGTATTGGTTTGCCTCATCTTGGCAAGCAACTACATGCTCAGTTGTTTGTCAATGGTTGGGACCATGATGATTATGATGGCAGATTATCAAAGAGCCTCATTCACATGTACTCGGCCTCTGGTATCATGGATTCCGCGTACTTTCTTTTCATCAAGAACTCAAGTAACTGTACCGCTCAGTCTTGTAATTCTATGATTAACGGTTACATACAGATTGGGCAGCTAGAACAGGCTCAAATTTGCTTTGACAATGCACCCATCCGAGACAAGATCTCTTGGACGTCTATGATAACTGGGTATTTTAGTGTTGGACAAGTATCAAAAGCTTGTAATATGTTTCAAATCATGCCAGAAAAGGATGCAATTGCATGGACAGTGATGATTTCGGGGCACATCCAAAATGAGCTTTTTGCTGAAGCTACCAATTTGTTTTCAGAAATGAGGTCAGAAGGTGTTTTGCCTCTCAGTTCAACATATTCAGTTCTTCTTGGAGCTGCAGGTGCAATGGCATATCTTGATTCTGGGAAACAGTTCCACAGCCTGCTGATCAAAACACAGTACGAATTTGACTTGTTTATTAACAACGCACTGATTTGCATGTATGCCAAATGTGGGGAGCTAGATGACGCTTACCGTACATTCTCAAACATGTGTTTCCGGGATTTGATTTCTTGGAATTCCATGATTATGGGGTTTTCAGACCACGGACATGCAAATGAGACTCTGAAGATCTTTGGAGCCATGGTCAAATCTAAAATCCGACCAAATTCGGTCACTTTTTTGGGCATCCTATCAGCATGTAGCCATGCAGGGCTTGTCCCGAGAGGGTGCGATTTTTTCCATGCCATGAGCAATGTTTATGCAATTCAACCAGCTTTGGAGCATTACATTTGTATGATTAATCTTCTGGGAAGAGCTGGGAAAGTAAAAGAAGCAGAAGAATTTGTTTCAAGGCTTCCTTTCAAACCAGATCGCACTGTTTGGGGTGCATTGCTTGGTATATGCGGATTTGGTGAAACGAATGCTGATGTTGCTAGATATGCAGCCAAAAATTTCCTAGAGCTGGATCCTTTAAATGCACCAGCCCATGTGGTGCTTTGCAACATATATGCTGCAAATGGTCAGCATATTGAGGAAAGACAGCTGAGAAGGGAGATGGGATTCAAAGGAGTGAGAAAGGTTCCTGGATGCAGTTGGATTCTGGTGCAAGGGAAAGTAAATGTATTCCTCTCAGGCGATAAACTCCATCCCGAAGTGGATGAGATGCTATCCCTTGTATTTGGCACTATTAGTGAGTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR

Protein Analysis

746

Amino Acids

83.85

Weight (kDa)

6.56

Isoelectric Point (pI)

33.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	108 - 141	1.4e-07	PPR repeat family
PPR	PF01535	111 - 141	5.1e-07	PPR repeat
PPR_2	PF13041	139 - 172	3.5e-06	PPR repeat family
PPR_1	PF12854	139 - 167	8.4e-06	PPR repeat
PPR	PF01535	142 - 172	2.8e-06	PPR repeat
PPR_2	PF13041	170 - 203	2.7e-07	PPR repeat family
PPR	PF01535	173 - 203	6.2e-07	PPR repeat
PPR_2	PF13041	201 - 234	1.2e-08	PPR repeat family
PPR	PF01535	204 - 234	2.6e-08	PPR repeat
PPR_2	PF13041	232 - 264	2.8e-06	PPR repeat family
PPR_1	PF12854	232 - 259	1.9e-08	PPR repeat
PPR	PF01535	235 - 264	1.3e-07	PPR repeat
PPR_2	PF13041	432 - 477	1.2e-08	PPR repeat family
PPR_2	PF13041	533 - 580	2.7e-09	PPR repeat family
E_motif	PF20431	653 - 712	8.1e-13	E motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0012180)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G32415
fragaria_vesca	FvH4_5g21130 FvH4_5g21130 FvH4_5g21130
malus_domestica	MD06G1040900.v1.1
prunus_persica	Prupe.5G047200_v2.0.a1
pyrus_communis	pycom06g03410
rosa_chinensis	RchiOBHm_Chr7g0208251
rosa_laevigata	RLG00000003235
rosa_multiflora	Rmu_sc0000841.1_g000023 Rmu_sc0000841.1_g000024 Rmu_sc0007869.1_g000019
rosa_roxburghii	Rroxscaffold_3G00250640
rosa_rugosa	Rorug07G0102500
rosa_samantha	Rh7AG236700 Rh7BG232300 Rh7CG252600 Rh7DG242700
rosa_wichuraiana	Rw7G020200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	18
AarI	CACCTGC	1 cut(s)	1424
AatII	GACGTC	1 cut(s)	1220
Acc36I	ACCTGC	2 cut(s)	568, 1424
AccB1I	GGYRCC	1 cut(s)	177
AccBSI	CCGCTC	1 cut(s)	1112
AccII	CGCG	3 cut(s)	6, 234, 1073
AciI	CCGC	7 cut(s)	232, 455, 461, 935, 1071, 1110, 1941
AclWI	GGATC	2 cut(s)	1997, 2010
AcoI	YGGCCR	2 cut(s)	229, 742
AcsI	RAATTY	7 cut(s)	526, 1173, 1499, 1612, 1702, 1877, 1987
AcuI	CTGAAG	3 cut(s)	893, 1371, 1682
AcyI	GRCGYC	1 cut(s)	1217
AfaI	GTAC	5 cut(s)	1046, 1076, 1108, 1496, 1573
AfiI	CCNNNNNNNGG	3 cut(s)	956, 1548, 1999
AflIII	ACRYGT	2 cut(s)	1041, 1584
AjnI	CCWGG	2 cut(s)	428, 2119
AjuI	GAANNNNNNNTTGG	2 cut(s)	545, 577
Alw26I	GTCTC	3 cut(s)	899, 1194, 1649
AlwI	GGATC	2 cut(s)	1997, 2010
Ama87I	CYCGRG	2 cut(s)	268, 1756
AoxI	GGCC	3 cut(s)	229, 742, 1050
ApeKI	GCWGC	6 cut(s)	196, 222, 1156, 1430, 1979, 2048
ApoI	RAATTY	7 cut(s)	526, 1173, 1499, 1612, 1702, 1877, 1987
AseI	ATTAAT	1 cut(s)	1836
Asp700I	GAANNNNTTC	2 cut(s)	836, 1466
AspLEI	GCGC	2 cut(s)	6, 8
AspS9I	GGNCC	1 cut(s)	997
AsuC2I	CCSGG	1 cut(s)	1595
AsuHPI	GGTGA	1 cut(s)	1961
AvaI	CYCGRG	2 cut(s)	268, 1756
AvaII	GGWCC	1 cut(s)	997
BaeGI	GKGCMC	1 cut(s)	1329
BalI	TGGCCA	1 cut(s)	744
BamHI	GGATCC	1 cut(s)	2002
BanI	GGYRCC	1 cut(s)	177
BarI	GAAGNNNNNNTAC	2 cut(s)	866, 898
BbvI	GCAGC	6 cut(s)	183, 234, 1168, 1417, 1991, 2035
BccI	CCATC	5 cut(s)	529, 1007, 1202, 2086, 2190
BciT130I	CCWGG	2 cut(s)	430, 2121
BciVI	GTATCC	1 cut(s)	752
BclI	TGATCA	1 cut(s)	1482
BcnI	CCSGG	1 cut(s)	1595
BcoDI	GTCTC	3 cut(s)	899, 1194, 1649
BfaI	CTAG	5 cut(s)	714, 1160, 1556, 1971, 1994
BfmI	CTRYAG	1 cut(s)	1431
BfuAI	ACCTGC	2 cut(s)	568, 1424
BfuI	GTATCC	1 cut(s)	752
BglII	AGATCT	2 cut(s)	1206, 1665
BisI	GCNGC	7 cut(s)	197, 223, 232, 1157, 1431, 1980, 2049
BlsI	GCNGC	7 cut(s)	198, 224, 233, 1158, 1432, 1981, 2050
Bme1390I	CCNGG	3 cut(s)	430, 1595, 2121
Bme18I	GGWCC	1 cut(s)	997
BmeT110I	CYCGRG	2 cut(s)	268, 1756
BmgT120I	GGNCC	1 cut(s)	997
BmiI	GGNNCC	6 cut(s)	64, 179, 998, 1675, 2004, 2118
BmrFI	CCNGG	3 cut(s)	430, 1595, 2121
BmrI	ACTGGG	1 cut(s)	1239
BmuI	ACTGGG	1 cut(s)	1239
BplI	GAGNNNNNCTC	2 cut(s)	746, 778
BpuEI	CTTGAG	3 cut(s)	153, 221, 1081
BpuMI	CCSGG	1 cut(s)	1595
BsaAI	YACGTR	1 cut(s)	191
BsaHI	GRCGYC	1 cut(s)	1217
BsaI	GGTCTC	1 cut(s)	899
BsaJI	CCNNGG	3 cut(s)	226, 1639, 1677
BsaWI	WCCGGW	1 cut(s)	725
BsaXI	ACNNNNNCTCC	2 cut(s)	1665, 1695
Bsc4I	CCNNNNNNNGG	3 cut(s)	956, 1548, 1999
Bse1I	ACTGG	2 cut(s)	248, 1234
Bse3DI	GCAATG	4 cut(s)	351, 1446, 1795, 1925
BseBI	CCWGG	2 cut(s)	430, 2121
BseDI	CCNNGG	3 cut(s)	226, 1639, 1677
BseLI	CCNNNNNNNGG	3 cut(s)	956, 1548, 1999
BseMI	GCAATG	4 cut(s)	351, 1446, 1795, 1925
BseMII	CTCAG	9 cut(s)	204, 309, 633, 774, 989, 1127, 1414, 2072, 2181
BseNI	ACTGG	2 cut(s)	248, 1234
BsePI	GCGCGC	1 cut(s)	4
BseRI	GAGGAG	1 cut(s)	286
BseSI	GKGCMC	1 cut(s)	1329
BseXI	GCAGC	6 cut(s)	183, 234, 1168, 1417, 1991, 2035
BseYI	CCCAGC	4 cut(s)	147, 279, 539, 1853
Bsh1236I	CGCG	3 cut(s)	6, 234, 1073
BshFI	GGCC	3 cut(s)	231, 744, 1052
BshNI	GGYRCC	1 cut(s)	177
BsiHKCI	CYCGRG	2 cut(s)	268, 1756
BsiSI	CCGG	3 cut(s)	66, 726, 1594
BslFI	GGGAC	2 cut(s)	1010, 1739
BslI	CCNNNNNNNGG	3 cut(s)	956, 1548, 1999
BsmAI	GTCTC	3 cut(s)	899, 1194, 1649
BsmFI	GGGAC	2 cut(s)	1010, 1739
BsmI	GAATGC	2 cut(s)	625, 1963
BsnI	GGCC	3 cut(s)	231, 744, 1052
Bso31I	GGTCTC	1 cut(s)	899
BsoBI	CYCGRG	2 cut(s)	268, 1756
Bsp1286I	GDGCHC	1 cut(s)	1329
Bsp143I	GATC	5 cut(s)	1206, 1482, 1665, 1906, 2002
Bsp19I	CCATGG	2 cut(s)	226, 1677
BspACI	CCGC	7 cut(s)	232, 455, 461, 935, 1071, 1110, 1941
BspANI	GGCC	3 cut(s)	231, 744, 1052
BspCNI	CTCAG	9 cut(s)	205, 310, 634, 775, 988, 1126, 1413, 2073, 2180
BspFNI	CGCG	3 cut(s)	6, 234, 1073
BspLI	GGNNCC	6 cut(s)	64, 179, 998, 1675, 2004, 2118
BspMAI	CTGCAG	1 cut(s)	1435
BspMI	ACCTGC	2 cut(s)	568, 1424
BspPI	GGATC	2 cut(s)	1997, 2010
BspQI	GCTCTTC	1 cut(s)	1843
BspT107I	GGYRCC	1 cut(s)	177
BspTNI	GGTCTC	1 cut(s)	899
BsrBI	CCGCTC	1 cut(s)	1112
BsrDI	GCAATG	4 cut(s)	351, 1446, 1795, 1925
BsrI	ACTGG	2 cut(s)	248, 1234
BssECI	CCNNGG	3 cut(s)	226, 1639, 1677
BssHII	GCGCGC	1 cut(s)	4
BssMI	GATC	5 cut(s)	1206, 1482, 1665, 1906, 2002
BssNI	GRCGYC	1 cut(s)	1217
BssT1I	CCWWGG	2 cut(s)	226, 1677
Bst2UI	CCWGG	2 cut(s)	430, 2121
Bst4CI	ACNGT	9 cut(s)	161, 734, 1106, 1139, 1312, 1467, 1494, 1571, 1915
Bst6I	CTCTTC	1 cut(s)	1843
BstACI	GRCGYC	1 cut(s)	1217
BstBAI	YACGTR	1 cut(s)	191
BstC8I	GCNNGC	4 cut(s)	6, 389, 962, 1478
BstDEI	CTNAG	9 cut(s)	213, 318, 642, 783, 975, 1113, 1400, 2081, 2167
BstDSI	CCRYGG	3 cut(s)	226, 1639, 1677
BstFNI	CGCG	3 cut(s)	6, 234, 1073
BstHHI	GCGC	2 cut(s)	6, 8
BstKTI	GATC	5 cut(s)	1209, 1485, 1668, 1909, 2005
BstMAI	GTCTC	3 cut(s)	899, 1194, 1649
BstMBI	GATC	5 cut(s)	1206, 1482, 1665, 1906, 2002
BstMWI	GCNNNNNNNGC	5 cut(s)	228, 231, 1436, 1967, 1976
BstNI	CCWGG	2 cut(s)	430, 2121
BstNSI	RCATGY	6 cut(s)	974, 1045, 1537, 1588, 1649, 1737
BstSCI	CCNGG	3 cut(s)	428, 1593, 2119
BstSFI	CTRYAG	1 cut(s)	1431
BstSLI	GKGCMC	1 cut(s)	1329
BstUI	CGCG	3 cut(s)	6, 234, 1073
BstV1I	GCAGC	6 cut(s)	183, 234, 1168, 1417, 1991, 2035
BstX2I	RGATCY	3 cut(s)	1206, 1665, 2002
BstXI	CCANNNNNNTGG	1 cut(s)	1624
BstYI	RGATCY	3 cut(s)	1206, 1665, 2002
BsuI	GTATCC	1 cut(s)	752
BsuRI	GGCC	3 cut(s)	231, 744, 1052
BtgI	CCRYGG	3 cut(s)	226, 1639, 1677
BtgZI	GCGATG	1 cut(s)	512
BtsIMutI	CAGTG	5 cut(s)	157, 241, 1317, 1523, 1911
BveI	ACCTGC	2 cut(s)	568, 1424
Cac8I	GCNNGC	4 cut(s)	6, 389, 962, 1478
CfoI	GCGC	2 cut(s)	6, 8
Cfr13I	GGNCC	1 cut(s)	997
CseI	GACGC	2 cut(s)	194, 1571
Csp6I	GTAC	5 cut(s)	1045, 1075, 1107, 1495, 1572
CviQI	GTAC	5 cut(s)	1045, 1075, 1107, 1495, 1572
DdeI	CTNAG	9 cut(s)	213, 318, 642, 783, 975, 1113, 1400, 2081, 2167
DpnI	GATC	5 cut(s)	1208, 1484, 1667, 1908, 2004
DpnII	GATC	5 cut(s)	1206, 1482, 1665, 1906, 2002
DraI	TTTAAA	2 cut(s)	91, 2010
EaeI	YGGCCR	2 cut(s)	229, 742
Eam1104I	CTCTTC	1 cut(s)	1843
EarI	CTCTTC	1 cut(s)	1843
Eco130I	CCWWGG	2 cut(s)	226, 1677
Eco31I	GGTCTC	1 cut(s)	899
Eco32I	GATATC	2 cut(s)	310, 723
Eco47I	GGWCC	1 cut(s)	997
Eco57I	CTGAAG	3 cut(s)	893, 1371, 1682
Eco88I	CYCGRG	2 cut(s)	268, 1756
EcoRI	GAATTC	2 cut(s)	526, 1612
EcoRII	CCWGG	2 cut(s)	428, 2119
EcoRV	GATATC	2 cut(s)	310, 723
EcoT14I	CCWWGG	2 cut(s)	226, 1677
ErhI	CCWWGG	2 cut(s)	226, 1677
FalI	AAGNNNNNCTT	2 cut(s)	1879, 1911
FaqI	GGGAC	2 cut(s)	1010, 1739
FauI	CCCGC	2 cut(s)	454, 928
FbaI	TGATCA	1 cut(s)	1482
Fnu4HI	GCNGC	7 cut(s)	197, 223, 232, 1157, 1431, 1980, 2049
Fsp4HI	GCNGC	7 cut(s)	197, 223, 232, 1157, 1431, 1980, 2049
FspBI	CTAG	5 cut(s)	714, 1160, 1556, 1971, 1994
GlaI	GCGC	2 cut(s)	5, 7
GluI	GCNGC	7 cut(s)	197, 223, 232, 1157, 1431, 1980, 2049
GsaI	CCCAGC	4 cut(s)	151, 283, 543, 1857
HaeIII	GGCC	3 cut(s)	231, 744, 1052
HapII	CCGG	3 cut(s)	66, 726, 1594
HgaI	GACGC	2 cut(s)	194, 1571
HhaI	GCGC	2 cut(s)	6, 8
Hin1I	GRCGYC	1 cut(s)	1217
Hin6I	GCGC	2 cut(s)	4, 6
HinP1I	GCGC	2 cut(s)	4, 6
HindIII	AAGCTT	1 cut(s)	1260
HinfI	GANTC	9 cut(s)	100, 143, 393, 1067, 1454, 1657, 2097, 2134, 2231
HpaII	CCGG	3 cut(s)	66, 726, 1594
HphI	GGTGA	1 cut(s)	1961
Hpy166II	GTNNAC	1 cut(s)	241
Hpy188I	TCNGA	8 cut(s)	43, 56, 1199, 1372, 1384, 1636, 1662, 1697
Hpy188III	TCNNGA	8 cut(s)	111, 137, 259, 866, 1090, 1451, 1756, 2186
Hpy8I	GTNNAC	1 cut(s)	241
Hpy99I	CGWCG	2 cut(s)	143, 601
HpyAV	CCTTC	5 cut(s)	34, 868, 919, 1379, 2079
HpyCH4III	ACNGT	9 cut(s)	161, 734, 1106, 1139, 1312, 1467, 1494, 1571, 1915
HpyCH4IV	ACGT	2 cut(s)	190, 1217
HpyF10VI	GCNNNNNNNGC	5 cut(s)	228, 231, 1436, 1967, 1976
HpyF3I	CTNAG	9 cut(s)	213, 318, 642, 783, 975, 1113, 1400, 2081, 2167
HpySE526I	ACGT	2 cut(s)	190, 1217
Hsp92I	GRCGYC	1 cut(s)	1217
HspAI	GCGC	2 cut(s)	4, 6
Ksp22I	TGATCA	1 cut(s)	1482
Kzo9I	GATC	5 cut(s)	1206, 1482, 1665, 1906, 2002
LguI	GCTCTTC	1 cut(s)	1843
LmnI	GCTCC	6 cut(s)	68, 569, 1427, 1552, 1673, 1816
Lsp1109I	GCAGC	6 cut(s)	183, 234, 1168, 1417, 1991, 2035
MaeI	CTAG	5 cut(s)	714, 1160, 1556, 1971, 1994
MaeII	ACGT	2 cut(s)	190, 1217
MaeIII	GTNAC	4 cut(s)	728, 1100, 1139, 1708
MalI	GATC	5 cut(s)	1208, 1484, 1667, 1908, 2004
MbiI	CCGCTC	1 cut(s)	1112
MboI	GATC	5 cut(s)	1206, 1482, 1665, 1906, 2002
MboII	GAAGA	8 cut(s)	146, 334, 613, 1412, 1675, 1832, 1860, 1886
MfeI	CAATTG	1 cut(s)	1299
MflI	RGATCY	3 cut(s)	1206, 1665, 2002
MhlI	GDGCHC	1 cut(s)	1329
MlsI	TGGCCA	1 cut(s)	744
MluNI	TGGCCA	1 cut(s)	744
MlyI	GAGTC	1 cut(s)	1651
MmeI	TCCRAC	3 cut(s)	1225, 1720, 2111
Mox20I	TGGCCA	1 cut(s)	744
MroXI	GAANNNNTTC	2 cut(s)	836, 1466
MscI	TGGCCA	1 cut(s)	744
MseI	TTAA	7 cut(s)	50, 90, 549, 1134, 1515, 1836, 2009
MslI	CAYNNNNRTG	6 cut(s)	750, 1040, 1622, 1644, 1650, 1829
Msp20I	TGGCCA	1 cut(s)	744
MspA1I	CMGCKG	1 cut(s)	2080
MspI	CCGG	3 cut(s)	66, 726, 1594
MspR9I	CCNGG	3 cut(s)	430, 1595, 2121
MunI	CAATTG	1 cut(s)	1299
Mva1269I	GAATGC	2 cut(s)	625, 1963
MvaI	CCWGG	2 cut(s)	430, 2121
MvnI	CGCG	3 cut(s)	6, 234, 1073
MwoI	GCNNNNNNNGC	5 cut(s)	228, 231, 1436, 1967, 1976
NciI	CCSGG	1 cut(s)	1595
NcoI	CCATGG	2 cut(s)	226, 1677
NdeII	GATC	5 cut(s)	1206, 1482, 1665, 1906, 2002
NlaIV	GGNNCC	6 cut(s)	64, 179, 998, 1675, 2004, 2118
NmeAIII	GCCGAG	1 cut(s)	1028
NmuCI	GTSAC	1 cut(s)	1708
NspI	RCATGY	6 cut(s)	974, 1045, 1537, 1588, 1649, 1737
PaeR7I	CTCGAG	1 cut(s)	268
PaqCI	CACCTGC	1 cut(s)	1424
PauI	GCGCGC	1 cut(s)	4
PciI	ACATGT	2 cut(s)	1041, 1584
PciSI	GCTCTTC	1 cut(s)	1843
PcsI	WCGNNNNNNNCGW	1 cut(s)	266
PctI	GAATGC	2 cut(s)	625, 1963
PdmI	GAANNNNTTC	2 cut(s)	836, 1466
PfeI	GAWTC	7 cut(s)	100, 143, 393, 1067, 1454, 2097, 2134
PfoI	TCCNGGA	3 cut(s)	428, 1593, 2119
PkrI	GCNGC	7 cut(s)	198, 224, 233, 1158, 1432, 1981, 2050
PleI	GAGTC	1 cut(s)	1651
PpsI	GAGTC	1 cut(s)	1651
Ppu21I	YACGTR	1 cut(s)	191
PscI	ACATGT	2 cut(s)	1041, 1584
PshBI	ATTAAT	1 cut(s)	1836
PsiI	TTATAA	1 cut(s)	18
Psp6I	CCWGG	2 cut(s)	428, 2119
PspFI	CCCAGC	4 cut(s)	147, 279, 539, 1853
PspGI	CCWGG	2 cut(s)	428, 2119
PspN4I	GGNNCC	6 cut(s)	64, 179, 998, 1675, 2004, 2118
PspPI	GGNCC	1 cut(s)	997
PspXI	VCTCGAGB	1 cut(s)	268
PstI	CTGCAG	1 cut(s)	1435
PsuI	RGATCY	3 cut(s)	1206, 1665, 2002
PteI	GCGCGC	1 cut(s)	4
PvuII	CAGCTG	1 cut(s)	2080
RsaI	GTAC	5 cut(s)	1046, 1076, 1108, 1496, 1573
RsaNI	GTAC	5 cut(s)	1045, 1075, 1107, 1495, 1572
RseI	CAYNNNNRTG	6 cut(s)	750, 1040, 1622, 1644, 1650, 1829
SapI	GCTCTTC	1 cut(s)	1843
SaqAI	TTAA	7 cut(s)	50, 90, 549, 1134, 1515, 1836, 2009
SatI	GCNGC	7 cut(s)	197, 223, 232, 1157, 1431, 1980, 2049
Sau3AI	GATC	5 cut(s)	1206, 1482, 1665, 1906, 2002
Sau96I	GGNCC	1 cut(s)	997
SchI	GAGTC	1 cut(s)	1651
ScrFI	CCNGG	3 cut(s)	430, 1595, 2121
SduI	GDGCHC	1 cut(s)	1329
SfcI	CTRYAG	1 cut(s)	1431
Sfr274I	CTCGAG	1 cut(s)	268
SinI	GGWCC	1 cut(s)	997
SlaI	CTCGAG	1 cut(s)	268
SmiMI	CAYNNNNRTG	6 cut(s)	750, 1040, 1622, 1644, 1650, 1829
SmlI	CTYRAG	4 cut(s)	168, 200, 268, 1096
SmoI	CTYRAG	4 cut(s)	168, 200, 268, 1096
SsiI	CCGC	7 cut(s)	232, 455, 461, 935, 1071, 1110, 1941
SspMI	CTAG	5 cut(s)	714, 1160, 1556, 1971, 1994
StyD4I	CCNGG	3 cut(s)	428, 1593, 2119
StyI	CCWWGG	2 cut(s)	226, 1677
TaaI	ACNGT	9 cut(s)	161, 734, 1106, 1139, 1312, 1467, 1494, 1571, 1915
TaiI	ACGT	2 cut(s)	193, 1220
TaqI	TCGA	5 cut(s)	110, 269, 285, 530, 690
TaqII	GACCGA	2 cut(s)	726, 1696
TatI	WGTACW	1 cut(s)	1044
TauI	GCSGC	1 cut(s)	234
TfiI	GAWTC	7 cut(s)	100, 143, 393, 1067, 1454, 2097, 2134
Tru1I	TTAA	7 cut(s)	50, 90, 549, 1134, 1515, 1836, 2009
Tru9I	TTAA	7 cut(s)	50, 90, 549, 1134, 1515, 1836, 2009
TscAI	CASTG	5 cut(s)	164, 248, 1317, 1530, 1918
TseFI	GTSAC	1 cut(s)	1708
TseI	GCWGC	6 cut(s)	196, 222, 1156, 1430, 1979, 2048
Tsp45I	GTSAC	1 cut(s)	1708
TspDTI	ATGAA	2 cut(s)	901, 1075
TspGWI	ACGGA	4 cut(s)	17, 310, 915, 1656
TspRI	CASTG	5 cut(s)	164, 248, 1317, 1530, 1918
VpaK11BI	GGWCC	1 cut(s)	997
VspI	ATTAAT	1 cut(s)	1836
XapI	RAATTY	7 cut(s)	526, 1173, 1499, 1612, 1702, 1877, 1987
XceI	RCATGY	6 cut(s)	974, 1045, 1537, 1588, 1649, 1737
XhoI	CTCGAG	1 cut(s)	268
XmnI	GAANNNNTTC	2 cut(s)	836, 1466
XspI	CTAG	5 cut(s)	714, 1160, 1556, 1971, 1994
ZraI	GACGTC	1 cut(s)	1218

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.