Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007869.1

Orthogroup ID

OG0012180

Physical Location & Seq

Genomic Coordinates Reverse (-)

87707 .. 89801

Gene Structure 2095 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007869.1_g000019.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1887 bp

atgcctagcagagatgttcatggacggattgtgcattggacttgtttggttactaagtacgcgagaggcggttgggtcgatgaggctcgggtgttgtttgatattatgccggagagaaatgtggttacttataatgctatgctgtcggggtatgtgcagtcagggaggttgagtgagggttgtcagttttttgaggagatgccggagaggaatgtggtgtcgtggacttcgatgctgtgtgggttagctggtgcggggaggattgaggaggcgaggcggttgtttgaggaaatgccagagaggaatgttgtttcttggaattcgatgattgctgggttggttaagaatggggatttgaagggagcaagggaggtttttgaccggatgcggatgaagaatgttgtttcttgtaatgctatgattggtgggtatgcggagcattgtagaatggatgaggccagggctttgtttgatgggatgctggacaggaatgtgattacttggactagtatgatatctggttattgtaggtctggcaatgtgcatgaagggtatgctttgttttgcaaaatgcccgagaggaatgttgtttcttggacagccatgattggtggctttgcttggaatggattttataaagaagctctattgttattccttgaatggaatgagaactatgaaacaagaccaaatggagagacgttcatatcgcttgtatatgcttgtgctggtattgggttgcctcatcttggaaagcaactacatgctcagttgattgtcaacaattgggaccatgatgattatgatggcaggctatcaaagagcctcattcacatgtactcggcctatggtgtcatggattatgcagattttctgtttatgaagcattcaaatactcgtagtgttcagtcttgtaattctatgattaatggttacttacagattgggcaactcgaccaggctcagaatctctttgacagactaccaatccgagacaagatctcttggacatctatgatcaccgggtattttaatgttgggaaagtatcaaaggcttgttatctgttccaaattatgccagatagggatgcaatttcatggacagcgatgatttcagggcacgtccaaaatgagctttttgcagaagccactgatatcttctttaaaatgcgttcagaaggtgtttcgcctctgaattcaacatattcagttcttcttggagttgctggtgcaatgtcatatcttgattctgggagacagttccatggccttctgataaaaacacattatgaacttgacttgtttattagtaactcactgatctctatgtatgccaaatgtggggagatagatgacgcttacccatgtagccatgcagggctagtccatagaggatgggagttttttaatgccatgagtgatgtttatggaattcaaccagcttcggagcattgcatttgtatgattaatcttttgggtagagctgggaaggtaagggaagcccaagaattggtttggaggctacctttcaaaccagatcctgctgtttggggagcattgcttggtatatgtgggctcggtgagacaaatgccgaggttgccaaatatgcggccaaacaactcctggagctggatcccttaaatgcaccagcccatgtggtcctttgtaacatatatgcagcaaatggtatgcatattgaggaaaaatcactgagaagggagatggggttgaaaggtgttagaaaggttcctgggtgcagttggattctggtgcaagggagagttaatgtattcctctctggagataaattacacctggatgttgaggagatgctgtcaatcctatttggcaccattggtgaatcacaaaaacagtttagtgtatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR

Protein Analysis

628

Amino Acids

70.64

Weight (kDa)

6.08

Isoelectric Point (pI)

38.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012180)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G32415
fragaria_vesca	FvH4_5g21130 FvH4_5g21130 FvH4_5g21130
malus_domestica	MD06G1040900.v1.1
prunus_persica	Prupe.5G047200_v2.0.a1
pyrus_communis	pycom06g03410
rosa_chinensis	RchiOBHm_Chr7g0208251
rosa_laevigata	RLG00000003235
rosa_multiflora	Rmu_sc0000841.1_g000023 Rmu_sc0000841.1_g000024 Rmu_sc0007869.1_g000019
rosa_roxburghii	Rroxscaffold_3G00250640
rosa_rugosa	Rorug07G0102500
rosa_samantha	Rh7AG236700 Rh7BG232300 Rh7CG252600 Rh7DG242700
rosa_wichuraiana	Rw7G020200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	132, 636
AccB1I	GGYRCC	1 cut(s)	1850
AccB7I	CCANNNNNTGG	1 cut(s)	1510
AccII	CGCG	1 cut(s)	62
AciI	CCGC	6 cut(s)	69, 254, 277, 388, 434, 1610
AclWI	GGATC	3 cut(s)	1532, 1628, 1641
AcoI	YGGCCR	1 cut(s)	1611
AcsI	RAATTY	3 cut(s)	319, 1195, 1431
AfaI	GTAC	2 cut(s)	59, 839
AfiI	CCNNNNNNNGG	4 cut(s)	749, 1341, 1510, 1630
AflIII	ACRYGT	1 cut(s)	834
AgsI	TTSAA	7 cut(s)	358, 662, 891, 1200, 1436, 1531, 1732
AhlI	ACTAGT	1 cut(s)	506
AjiI	CACGTC	1 cut(s)	1123
AjnI	CCWGG	5 cut(s)	458, 957, 1623, 1750, 1815
AluBI	AGCT	6 cut(s)	248, 644, 1135, 1442, 1484, 1630
AluI	AGCT	6 cut(s)	248, 644, 1135, 1442, 1484, 1630
Alw26I	GTCTC	4 cut(s)	692, 987, 1249, 1577
AlwI	GGATC	3 cut(s)	1532, 1628, 1641
AlwNI	CAGNNNCTG	1 cut(s)	1541
Ama87I	CYCGRG	2 cut(s)	87, 575
AoxI	GGCC	4 cut(s)	456, 843, 1267, 1611
ApeKI	GCWGC	1 cut(s)	1679
ApoI	RAATTY	3 cut(s)	319, 1195, 1431
AseI	ATTAAT	2 cut(s)	927, 1467
AspS9I	GGNCC	2 cut(s)	790, 1660
AsuC2I	CCSGG	1 cut(s)	1024
AsuHPI	GGTGA	3 cut(s)	1012, 1592, 1871
AvaI	CYCGRG	2 cut(s)	87, 575
AvaII	GGWCC	2 cut(s)	790, 1660
BaeGI	GKGCMC	1 cut(s)	1122
BamHI	GGATCC	1 cut(s)	1633
BanI	GGYRCC	1 cut(s)	1850
BanII	GRGCYC	1 cut(s)	1578
BbvI	GCAGC	1 cut(s)	1691
BccI	CCATC	4 cut(s)	467, 800, 1389, 1717
BciT130I	CCWGG	5 cut(s)	460, 959, 1625, 1752, 1817
BclI	TGATCA	1 cut(s)	1017
BcnI	CCSGG	1 cut(s)	1024
BcoDI	GTCTC	4 cut(s)	692, 987, 1249, 1577
BcuI	ACTAGT	1 cut(s)	506
BfaI	CTAG	3 cut(s)	6, 507, 1382
BglII	AGATCT	1 cut(s)	999
BisI	GCNGC	2 cut(s)	1611, 1680
BlsI	GCNGC	2 cut(s)	1612, 1681
Bme1390I	CCNGG	6 cut(s)	460, 959, 1024, 1625, 1752, 1817
Bme18I	GGWCC	2 cut(s)	790, 1660
BmeT110I	CYCGRG	2 cut(s)	87, 575
BmgBI	CACGTC	1 cut(s)	1123
BmgT120I	GGNCC	2 cut(s)	790, 1660
BmiI	GGNNCC	4 cut(s)	791, 1635, 1749, 1852
BmrFI	CCNGG	6 cut(s)	460, 959, 1024, 1625, 1752, 1817
BmsI	GCATC	6 cut(s)	189, 222, 375, 468, 1078, 1821
BpmI	CTGGAG	2 cut(s)	1646, 1821
BpuMI	CCSGG	1 cut(s)	1024
BsaJI	CCNNGG	4 cut(s)	459, 1264, 1593, 1751
BsaWI	WCCGGW	1 cut(s)	381
BsaXI	ACNNNNNCTCC	6 cut(s)	157, 187, 1712, 1742, 1820, 1850
Bsc4I	CCNNNNNNNGG	4 cut(s)	749, 1341, 1510, 1630
Bse3DI	GCAATG	4 cut(s)	544, 1239, 1450, 1556
BseBI	CCWGG	5 cut(s)	460, 959, 1625, 1752, 1817
BseDI	CCNNGG	4 cut(s)	459, 1264, 1593, 1751
BseGI	GGATG	7 cut(s)	390, 396, 457, 483, 1093, 1400, 1825
BseLI	CCNNNNNNNGG	4 cut(s)	749, 1341, 1510, 1630
BseMI	GCAATG	4 cut(s)	544, 1239, 1450, 1556
BseMII	CTCAG	3 cut(s)	782, 977, 1703
BseRI	GAGGAG	3 cut(s)	209, 281, 1841
BseSI	GKGCMC	1 cut(s)	1122
BseXI	GCAGC	1 cut(s)	1691
BseYI	CCCAGC	2 cut(s)	332, 1484
BsgI	GTGCAG	2 cut(s)	176, 1777
Bsh1236I	CGCG	1 cut(s)	62
BshFI	GGCC	4 cut(s)	458, 845, 1269, 1613
BshNI	GGYRCC	1 cut(s)	1850
BsiHKCI	CYCGRG	2 cut(s)	87, 575
BsiSI	CCGG	4 cut(s)	110, 203, 382, 1023
BslFI	GGGAC	1 cut(s)	803
BslI	CCNNNNNNNGG	4 cut(s)	749, 1341, 1510, 1630
BsmAI	GTCTC	4 cut(s)	692, 987, 1249, 1577
BsmBI	CGTCTC	1 cut(s)	692
BsmFI	GGGAC	1 cut(s)	803
BsmI	GAATGC	1 cut(s)	886
BsnI	GGCC	4 cut(s)	458, 845, 1269, 1613
BsoBI	CYCGRG	2 cut(s)	87, 575
Bsp1286I	GDGCHC	2 cut(s)	1122, 1578
Bsp143I	GATC	5 cut(s)	999, 1017, 1320, 1537, 1633
Bsp19I	CCATGG	1 cut(s)	1264
BspACI	CCGC	6 cut(s)	69, 254, 277, 388, 434, 1610
BspANI	GGCC	4 cut(s)	458, 845, 1269, 1613
BspCNI	CTCAG	3 cut(s)	781, 976, 1704
BspFNI	CGCG	1 cut(s)	62
BspLI	GGNNCC	4 cut(s)	791, 1635, 1749, 1852
BspPI	GGATC	3 cut(s)	1532, 1628, 1641
BspT107I	GGYRCC	1 cut(s)	1850
BsrDI	GCAATG	4 cut(s)	544, 1239, 1450, 1556
BssECI	CCNNGG	4 cut(s)	459, 1264, 1593, 1751
BssMI	GATC	5 cut(s)	999, 1017, 1320, 1537, 1633
BssT1I	CCWWGG	1 cut(s)	1264
Bst2UI	CCWGG	5 cut(s)	460, 959, 1625, 1752, 1817
Bst4CI	ACNGT	2 cut(s)	1260, 1875
BstC8I	GCNNGC	1 cut(s)	812
BstDEI	CTNAG	4 cut(s)	54, 768, 963, 1712
BstDSI	CCRYGG	1 cut(s)	1264
BstF5I	GGATG	7 cut(s)	390, 396, 457, 483, 1093, 1400, 1825
BstFNI	CGCG	1 cut(s)	62
BstKTI	GATC	5 cut(s)	1002, 1020, 1323, 1540, 1636
BstMAI	GTCTC	4 cut(s)	692, 987, 1249, 1577
BstMBI	GATC	5 cut(s)	999, 1017, 1320, 1537, 1633
BstMWI	GCNNNNNNNGC	2 cut(s)	1598, 1607
BstNI	CCWGG	5 cut(s)	460, 959, 1625, 1752, 1817
BstNSI	RCATGY	2 cut(s)	767, 838
BstSCI	CCNGG	6 cut(s)	458, 957, 1022, 1623, 1750, 1815
BstSLI	GKGCMC	1 cut(s)	1122
BstUI	CGCG	1 cut(s)	62
BstV1I	GCAGC	1 cut(s)	1691
BstX2I	RGATCY	3 cut(s)	999, 1537, 1633
BstYI	RGATCY	3 cut(s)	999, 1537, 1633
BsuRI	GGCC	4 cut(s)	458, 845, 1269, 1613
BtgI	CCRYGG	1 cut(s)	1264
BtgZI	GCGATG	1 cut(s)	1121
BtrI	CACGTC	1 cut(s)	1123
BtsCI	GGATG	7 cut(s)	390, 396, 457, 483, 1093, 1400, 1825
BtsIMutI	CAGTG	3 cut(s)	1149, 1316, 1709
Cac8I	GCNNGC	1 cut(s)	812
CaiI	CAGNNNCTG	1 cut(s)	1541
Cfr13I	GGNCC	2 cut(s)	790, 1660
CseI	GACGC	1 cut(s)	1364
Csp6I	GTAC	2 cut(s)	58, 838
CviQI	GTAC	2 cut(s)	58, 838
DdeI	CTNAG	4 cut(s)	54, 768, 963, 1712
DpnI	GATC	5 cut(s)	1001, 1019, 1322, 1539, 1635
DpnII	GATC	5 cut(s)	999, 1017, 1320, 1537, 1633
DraI	TTTAAA	1 cut(s)	1165
EaeI	YGGCCR	1 cut(s)	1611
Eco130I	CCWWGG	1 cut(s)	1264
Eco24I	GRGCYC	1 cut(s)	1578
Eco32I	GATATC	2 cut(s)	516, 1156
Eco47I	GGWCC	2 cut(s)	790, 1660
Eco88I	CYCGRG	2 cut(s)	87, 575
EcoRI	GAATTC	3 cut(s)	319, 1195, 1431
EcoRII	CCWGG	5 cut(s)	458, 957, 1623, 1750, 1815
EcoRV	GATATC	2 cut(s)	516, 1156
EcoT14I	CCWWGG	1 cut(s)	1264
EcoT22I	ATGCAT	1 cut(s)	1695
EcoT38I	GRGCYC	1 cut(s)	1578
ErhI	CCWWGG	1 cut(s)	1264
Esp3I	CGTCTC	1 cut(s)	692
FaqI	GGGAC	1 cut(s)	803
FauI	CCCGC	1 cut(s)	247
FbaI	TGATCA	1 cut(s)	1017
Fnu4HI	GCNGC	2 cut(s)	1611, 1680
FokI	GGATG	7 cut(s)	397, 403, 464, 490, 1100, 1407, 1832
FriOI	GRGCYC	1 cut(s)	1578
Fsp4HI	GCNGC	2 cut(s)	1611, 1680
FspBI	CTAG	3 cut(s)	6, 507, 1382
GluI	GCNGC	2 cut(s)	1611, 1680
GsaI	CCCAGC	2 cut(s)	336, 1488
GsuI	CTGGAG	2 cut(s)	1646, 1821
HaeIII	GGCC	4 cut(s)	458, 845, 1269, 1613
HapII	CCGG	4 cut(s)	110, 203, 382, 1023
HgaI	GACGC	1 cut(s)	1364
HincII	GTYRAC	1 cut(s)	781
HindII	GTYRAC	1 cut(s)	781
HinfI	GANTC	4 cut(s)	967, 1247, 1765, 1862
HpaII	CCGG	4 cut(s)	110, 203, 382, 1023
HphI	GGTGA	3 cut(s)	1012, 1592, 1871
Hpy166II	GTNNAC	2 cut(s)	225, 781
Hpy188I	TCNGA	6 cut(s)	966, 992, 1177, 1194, 1275, 1447
Hpy188III	TCNNGA	2 cut(s)	1244, 1800
Hpy8I	GTNNAC	2 cut(s)	225, 781
HpyAV	CCTTC	6 cut(s)	352, 542, 1172, 1280, 1483, 1710
HpyCH4III	ACNGT	2 cut(s)	1260, 1875
HpyCH4IV	ACGT	2 cut(s)	701, 1122
HpyF10VI	GCNNNNNNNGC	2 cut(s)	1598, 1607
HpyF3I	CTNAG	4 cut(s)	54, 768, 963, 1712
HpySE526I	ACGT	2 cut(s)	701, 1122
Ksp22I	TGATCA	1 cut(s)	1017
Kzo9I	GATC	5 cut(s)	999, 1017, 1320, 1537, 1633
LmnI	GCTCC	5 cut(s)	362, 436, 1447, 1553, 1627
Lsp1109I	GCAGC	1 cut(s)	1691
LweI	GCATC	6 cut(s)	189, 222, 375, 468, 1078, 1821
MaeI	CTAG	3 cut(s)	6, 507, 1382
MaeII	ACGT	2 cut(s)	701, 1122
MaeIII	GTNAC	5 cut(s)	49, 124, 932, 1310, 1667
MalI	GATC	5 cut(s)	1001, 1019, 1322, 1539, 1635
MboI	GATC	5 cut(s)	999, 1017, 1320, 1537, 1633
MboII	GAAGA	3 cut(s)	406, 1150, 1205
MfeI	CAATTG	1 cut(s)	784
MflI	RGATCY	3 cut(s)	999, 1537, 1633
MhlI	GDGCHC	2 cut(s)	1122, 1578
MluCI	AATT	9 cut(s)	319, 784, 916, 1071, 1092, 1195, 1431, 1508, 1808
MmeI	TCCRAC	1 cut(s)	1742
Mph1103I	ATGCAT	1 cut(s)	1695
MseI	TTAA	8 cut(s)	342, 927, 1032, 1164, 1407, 1467, 1640, 1785
MslI	CAYNNNNRTG	3 cut(s)	833, 1460, 1818
MspI	CCGG	4 cut(s)	110, 203, 382, 1023
MspR9I	CCNGG	6 cut(s)	460, 959, 1024, 1625, 1752, 1817
MunI	CAATTG	1 cut(s)	784
Mva1269I	GAATGC	1 cut(s)	886
MvaI	CCWGG	5 cut(s)	460, 959, 1625, 1752, 1817
MvnI	CGCG	1 cut(s)	62
MwoI	GCNNNNNNNGC	2 cut(s)	1598, 1607
NciI	CCSGG	1 cut(s)	1024
NcoI	CCATGG	1 cut(s)	1264
NdeII	GATC	5 cut(s)	999, 1017, 1320, 1537, 1633
NlaIV	GGNNCC	4 cut(s)	791, 1635, 1749, 1852
NmeAIII	GCCGAG	2 cut(s)	821, 1618
NsiI	ATGCAT	1 cut(s)	1695
NspI	RCATGY	2 cut(s)	767, 838
PciI	ACATGT	1 cut(s)	834
PcsI	WCGNNNNNNNCGW	1 cut(s)	227
PctI	GAATGC	1 cut(s)	886
PfeI	GAWTC	4 cut(s)	967, 1247, 1765, 1862
PflMI	CCANNNNNTGG	1 cut(s)	1510
PfoI	TCCNGGA	1 cut(s)	1623
PkrI	GCNGC	2 cut(s)	1612, 1681
PscI	ACATGT	1 cut(s)	834
PshBI	ATTAAT	2 cut(s)	927, 1467
PsiI	TTATAA	2 cut(s)	132, 636
Psp6I	CCWGG	5 cut(s)	458, 957, 1623, 1750, 1815
PspFI	CCCAGC	2 cut(s)	332, 1484
PspGI	CCWGG	5 cut(s)	458, 957, 1623, 1750, 1815
PspN4I	GGNNCC	4 cut(s)	791, 1635, 1749, 1852
PspPI	GGNCC	2 cut(s)	790, 1660
PstNI	CAGNNNCTG	1 cut(s)	1541
PsuI	RGATCY	3 cut(s)	999, 1537, 1633
RsaI	GTAC	2 cut(s)	59, 839
RsaNI	GTAC	2 cut(s)	58, 838
RseI	CAYNNNNRTG	3 cut(s)	833, 1460, 1818
SaqAI	TTAA	8 cut(s)	342, 927, 1032, 1164, 1407, 1467, 1640, 1785
SatI	GCNGC	2 cut(s)	1611, 1680
Sau3AI	GATC	5 cut(s)	999, 1017, 1320, 1537, 1633
Sau96I	GGNCC	2 cut(s)	790, 1660
ScrFI	CCNGG	6 cut(s)	460, 959, 1024, 1625, 1752, 1817
SduI	GDGCHC	2 cut(s)	1122, 1578
SfaNI	GCATC	6 cut(s)	189, 222, 375, 468, 1078, 1821
SinI	GGWCC	2 cut(s)	790, 1660
SmiMI	CAYNNNNRTG	3 cut(s)	833, 1460, 1818
SpeI	ACTAGT	1 cut(s)	506
Sse9I	AATT	9 cut(s)	319, 784, 916, 1071, 1092, 1195, 1431, 1508, 1808
SsiI	CCGC	6 cut(s)	69, 254, 277, 388, 434, 1610
SspMI	CTAG	3 cut(s)	6, 507, 1382
StyD4I	CCNGG	6 cut(s)	458, 957, 1022, 1623, 1750, 1815
StyI	CCWWGG	1 cut(s)	1264
TaaI	ACNGT	2 cut(s)	1260, 1875
TaiI	ACGT	2 cut(s)	704, 1125
TaqI	TCGA	4 cut(s)	78, 230, 323, 954
TasI	AATT	9 cut(s)	319, 784, 916, 1071, 1092, 1195, 1431, 1508, 1808
TatI	WGTACW	1 cut(s)	837
TauI	GCSGC	1 cut(s)	1613
TfiI	GAWTC	4 cut(s)	967, 1247, 1765, 1862
Tru1I	TTAA	8 cut(s)	342, 927, 1032, 1164, 1407, 1467, 1640, 1785
Tru9I	TTAA	8 cut(s)	342, 927, 1032, 1164, 1407, 1467, 1640, 1785
TscAI	CASTG	3 cut(s)	1156, 1323, 1716
TseI	GCWGC	1 cut(s)	1679
TspDTI	ATGAA	8 cut(s)	8, 407, 561, 693, 694, 896, 1086, 1305
TspGWI	ACGGA	1 cut(s)	40
TspRI	CASTG	3 cut(s)	1156, 1323, 1716
Van91I	CCANNNNNTGG	1 cut(s)	1510
VpaK11BI	GGWCC	2 cut(s)	790, 1660
VspI	ATTAAT	2 cut(s)	927, 1467
XapI	RAATTY	3 cut(s)	319, 1195, 1431
XceI	RCATGY	2 cut(s)	767, 838
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1621
XspI	CTAG	3 cut(s)	6, 507, 1382
Zsp2I	ATGCAT	1 cut(s)	1695

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.