Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0012180

Physical Location & Seq

Genomic Coordinates Forward (+)

44436742 .. 44438976

Gene Structure 2235 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00250640.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2235 bp

ATGCGCGCCTTTTTTTACAGACCCGCCCAGTTTAGCCTATTCAAAACCGCAACCAGACTTCGTTTTTATAGAACCCAGATTAGATTTCCTAACACCCAAAATGCAAAACTCACTTGTGATGATTCAGAGCTGCTTTATTATCTGTCACGACGTATGTTTAGAGATGCACGCCACCTGCTTGAGAAAATGCCTAGCAGAGATGTTCATGATAGCATTGTTCGTTGGACTTGTTTGGTTACTAAGTACTCGAGAGGCGGTTGGGTCGATGAGGCTCGGGTGCTGTTTGATATAATGCCGGAGAGAAATGTGGTTACTTATAATGCTATGCTGTCGGGGTATGTGCAGTCCGGGAGGTTGAGTGAGGGTTGTCAATTTTTTGAGGAGATGCCGGAGAGGAATGTGGTGTCGTGGACTTCGATGCTGTGTGGGTTGGCCGGTGAGGGGAGGATTGAGGAGGCGAGGCGGTTGTTTGAGGAAATGCCTGAGAGGAATGTTGTTTCTTGGAATTCGATGATTGCTGGGTTGGTTAAGAATGGGGATTTGGAGGGAGCAAGGGAGGTTTTTGACCGGATGCGGATGAAGAATGTTGTTTCTTGTAATGCTATGATTGGTGGGTATGCGGAGCATTGTAGAATGGATGAGGCCAGAGCTTTGTTTGATGGGATGCTGGACAGGAATGTGATTACTTGGACTAGTATGATATCTGGTTATTGTAGGTCTGGCAATGTGGATGAAGGGTATGCTTTGTTTTGCAAAATGCCCCAGAGGAATGTTGTTTCTTGGACAGCCATGATTGGTGGCTTTGCTTGGAATGGATTTTATAAAGAAGCTCTATTGTTATTCCTTGAATGGAATGGGAACTATGAAACAAAACCAAATGGAGAGACGTTCATATCGCTTGTATATGCTTGTGCTGGTATTGGGTTTCCTCATCTTGGAAAGCAACTACATGCTCAGTTGATTGTCAACAATTGGGACCATGATGATTATGATGGCAGGCTATCAAAGAGCCTCATTTACATGTACTCGGCCTATGGTGTCATGGATTATGCAGATTTTCTGTTTATGAAGCATTCAAATACTCGTAGTGTTCAGTCTTGTAATTCTATGATTAATGGTTACTTACAGATTGGGCAACTAGAACAAGCTCAGAATCTCTTTGACAGACTACCAATCCGAGACAAGATCTCTTGGACGTCTTTGATCACCGGGTATTTTAATGTTGGGAAAGTATCAAAGGCTTGTTATCTGTTCCAAATTATGCCAGATAGGGATGCAATTTCATGGACAGCGATGATTTCAGGGCACGTCCAAAATGAGCTTTTTGCAGAAGCCACTGATATCTTCTTTAAAATGCGTTCAGAAGGTGTTTCGCCTCTGAATTCAACATATTCAGTTCTTCTTGGAGTTGCTGGTGCAATGTCATATCTTGATTCTGGGAGACAGTTCCATGGCCTTCTGATAAAAACACATTATGAACTTGACTTGTTTATTAGTAACTCACTGATCTCTATGTATGCCAAATGTGGGGAGATAGATGACGCTTACCGTGCATTCTCAAACATGAGTTTGCGGGATTTGATTTCTTGGAATTCCATGATCATGGGGTTTTCTGACCATGGGCATGCAAATGAAGCTCTGAAGATCTTTGAAGCAATGGAACAATCTGGGGCTCACCCGAATTCTGTAACTTTTTTGGGCATCCTGTCAGCATGTAGCCATGCAGGGCTAGTCCATAGAGGATGGGAGTTTTTTAATGCCATGAGTGATGTTTATGGAATTCAACCAGCTTCGGAGCATTGCATTTGTATGATTAATCTTTTGGGTAGAGCTGGGAAGGTAAAGGAAGCCCAAGAATTGGTTTGGAGGCTACCTTTCAAACCAGATCCTGCTGTTTGGGGAGCATTGCTTGGTATATGTGGGCTAGGTAAGACAAATGCCGAGGTTGCTAAATATGCGGCCAAACAACTCCTGGAGCTGGATCCCTTAAATGCACCAGCCCATGTGGTCCTTTGTAACATATATGCAGCAAATGGTATGCATATTGAGGAAAAATCACTGAGAAGGGAGATGGGGTTGAAAGGAGTTAGAAAGGTTCCTGGGTGCAGTTGGATTCTGGCGCAAGGGAGAGTTAATGTATTCCTCTCTGGAGATAAATTACTCCCAGATGTTGAGGAGATGCTGTCAATCCTATTTGGCACCATTGGTGAATCACAGAAGCAGTTTAGTGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR

Protein Analysis

744

Amino Acids

84.16

Weight (kDa)

6.54

Isoelectric Point (pI)

40.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_1	PF12854	101 - 129	2.8e-06	PPR repeat
PPR_2	PF13041	101 - 134	4.5e-08	PPR repeat family
PPR	PF01535	104 - 134	6.2e-08	PPR repeat
PPR_2	PF13041	132 - 165	2.9e-07	PPR repeat family
PPR	PF01535	135 - 165	6.2e-07	PPR repeat
PPR_2	PF13041	163 - 196	1.6e-07	PPR repeat family
PPR_1	PF12854	163 - 192	7.4e-06	PPR repeat
PPR	PF01535	166 - 196	7.1e-09	PPR repeat
PPR_2	PF13041	194 - 227	1.9e-06	PPR repeat family
PPR_1	PF12854	223 - 253	6.2e-10	PPR repeat
PPR_2	PF13041	225 - 258	3.8e-08	PPR repeat family
PPR	PF01535	228 - 258	2.9e-09	PPR repeat
PPR_2	PF13041	425 - 468	3.8e-07	PPR repeat family
PPR	PF01535	427 - 457	8.2e-06	PPR repeat
PPR_2	PF13041	526 - 573	9.5e-11	PPR repeat family
PPR	PF01535	528 - 557	1.8e-06	PPR repeat
E_motif	PF20431	646 - 705	2.4e-14	E motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0012180)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G32415
fragaria_vesca	FvH4_5g21130 FvH4_5g21130 FvH4_5g21130
malus_domestica	MD06G1040900.v1.1
prunus_persica	Prupe.5G047200_v2.0.a1
pyrus_communis	pycom06g03410
rosa_chinensis	RchiOBHm_Chr7g0208251
rosa_laevigata	RLG00000003235
rosa_multiflora	Rmu_sc0000841.1_g000023 Rmu_sc0000841.1_g000024 Rmu_sc0007869.1_g000019
rosa_roxburghii	Rroxscaffold_3G00250640
rosa_rugosa	Rorug07G0102500
rosa_samantha	Rh7AG236700 Rh7BG232300 Rh7CG252600 Rh7DG242700
rosa_wichuraiana	Rw7G020200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	318, 822
AarI	CACCTGC	1 cut(s)	183
AatII	GACGTC	1 cut(s)	1199
Acc36I	ACCTGC	1 cut(s)	183
AccB1I	GGYRCC	1 cut(s)	2198
AccB7I	CCANNNNNTGG	1 cut(s)	1858
AccII	CGCG	1 cut(s)	6
AciI	CCGC	8 cut(s)	24, 48, 255, 463, 574, 620, 1573, 1958
AclWI	GGATC	3 cut(s)	1880, 1976, 1989
AcoI	YGGCCR	2 cut(s)	432, 1959
AcsI	RAATTY	5 cut(s)	505, 1381, 1591, 1681, 1779
AcuI	CTGAAG	1 cut(s)	1661
AcyI	GRCGYC	1 cut(s)	1196
AfaI	GTAC	2 cut(s)	245, 1025
AfiI	CCNNNNNNNGG	5 cut(s)	441, 935, 1527, 1858, 1978
AflIII	ACRYGT	1 cut(s)	1020
AgsI	TTSAA	8 cut(s)	43, 848, 1077, 1386, 1652, 1784, 1879, 2080
AhlI	ACTAGT	1 cut(s)	692
AjiI	CACGTC	1 cut(s)	1309
AjnI	CCWGG	2 cut(s)	1971, 2098
AjuI	GAANNNNNNNTTGG	2 cut(s)	524, 556
AluBI	AGCT	9 cut(s)	130, 650, 830, 1148, 1321, 1637, 1790, 1832, 1978
AluI	AGCT	9 cut(s)	130, 650, 830, 1148, 1321, 1637, 1790, 1832, 1978
Alw26I	GTCTC	3 cut(s)	878, 1173, 1435
AlwI	GGATC	3 cut(s)	1880, 1976, 1989
AlwNI	CAGNNNCTG	1 cut(s)	1889
Ama87I	CYCGRG	2 cut(s)	247, 273
AoxI	GGCC	5 cut(s)	432, 642, 1029, 1453, 1959
ApeKI	GCWGC	2 cut(s)	130, 2027
ApoI	RAATTY	5 cut(s)	505, 1381, 1591, 1681, 1779
AseI	ATTAAT	2 cut(s)	1113, 1815
AspLEI	GCGC	3 cut(s)	6, 8, 2122
AspS9I	GGNCC	2 cut(s)	976, 2008
AsuC2I	CCSGG	2 cut(s)	349, 1210
AsuHPI	GGTGA	4 cut(s)	449, 1198, 1667, 2219
AvaI	CYCGRG	2 cut(s)	247, 273
AvaII	GGWCC	2 cut(s)	976, 2008
BaeGI	GKGCMC	1 cut(s)	1308
BamHI	GGATCC	1 cut(s)	1981
BanI	GGYRCC	1 cut(s)	2198
BanII	GRGCYC	1 cut(s)	1675
BbvI	GCAGC	2 cut(s)	117, 2039
BccI	CCATC	4 cut(s)	653, 986, 1737, 2065
BciT130I	CCWGG	2 cut(s)	1973, 2100
BclI	TGATCA	2 cut(s)	1203, 1599
BcnI	CCSGG	2 cut(s)	349, 1210
BcoDI	GTCTC	3 cut(s)	878, 1173, 1435
BcuI	ACTAGT	1 cut(s)	692
BfaI	CTAG	5 cut(s)	192, 693, 1139, 1730, 1925
BfuAI	ACCTGC	1 cut(s)	183
BglII	AGATCT	2 cut(s)	1185, 1644
BisI	GCNGC	3 cut(s)	131, 1959, 2028
BlsI	GCNGC	3 cut(s)	132, 1960, 2029
BmcAI	AGTACT	1 cut(s)	245
Bme1390I	CCNGG	4 cut(s)	349, 1210, 1973, 2100
Bme18I	GGWCC	2 cut(s)	976, 2008
BmeT110I	CYCGRG	2 cut(s)	247, 273
BmgBI	CACGTC	1 cut(s)	1309
BmgT120I	GGNCC	2 cut(s)	976, 2008
BmiI	GGNNCC	4 cut(s)	977, 1983, 2097, 2200
BmrFI	CCNGG	4 cut(s)	349, 1210, 1973, 2100
BmrI	ACTGGG	1 cut(s)	22
BmsI	GCATC	8 cut(s)	154, 375, 408, 561, 654, 1264, 1710, 2169
BmuI	ACTGGG	1 cut(s)	22
BpmI	CTGGAG	2 cut(s)	1994, 2169
BpuEI	CTTGAG	1 cut(s)	200
BpuMI	CCSGG	2 cut(s)	349, 1210
BsaHI	GRCGYC	1 cut(s)	1196
BsaJI	CCNNGG	4 cut(s)	1450, 1618, 1941, 2099
BsaWI	WCCGGW	1 cut(s)	567
BsaXI	ACNNNNNCTCC	6 cut(s)	343, 373, 2060, 2090, 2168, 2198
Bsc4I	CCNNNNNNNGG	5 cut(s)	441, 935, 1527, 1858, 1978
Bse118I	RCCGGY	1 cut(s)	434
Bse1I	ACTGG	1 cut(s)	28
Bse3DI	GCAATG	5 cut(s)	730, 1425, 1662, 1798, 1904
BseBI	CCWGG	2 cut(s)	1973, 2100
BseDI	CCNNGG	4 cut(s)	1450, 1618, 1941, 2099
BseGI	GGATG	8 cut(s)	576, 582, 643, 669, 736, 1279, 1701, 1748
BseLI	CCNNNNNNNGG	5 cut(s)	441, 935, 1527, 1858, 1978
BseMI	GCAATG	5 cut(s)	730, 1425, 1662, 1798, 1904
BseMII	CTCAG	4 cut(s)	474, 968, 1163, 2051
BseNI	ACTGG	1 cut(s)	28
BsePI	GCGCGC	1 cut(s)	4
BseRI	GAGGAG	3 cut(s)	395, 467, 2189
BseSI	GKGCMC	1 cut(s)	1308
BseXI	GCAGC	2 cut(s)	117, 2039
BseYI	CCCAGC	2 cut(s)	518, 1832
BsgI	GTGCAG	2 cut(s)	362, 2125
Bsh1236I	CGCG	1 cut(s)	6
BshFI	GGCC	5 cut(s)	434, 644, 1031, 1455, 1961
BshNI	GGYRCC	1 cut(s)	2198
BsiHKCI	CYCGRG	2 cut(s)	247, 273
BsiSI	CCGG	6 cut(s)	296, 348, 389, 435, 568, 1209
BslFI	GGGAC	1 cut(s)	989
BslI	CCNNNNNNNGG	5 cut(s)	441, 935, 1527, 1858, 1978
BsmAI	GTCTC	3 cut(s)	878, 1173, 1435
BsmBI	CGTCTC	1 cut(s)	878
BsmFI	GGGAC	1 cut(s)	989
BsmI	GAATGC	2 cut(s)	1072, 1553
BsnI	GGCC	5 cut(s)	434, 644, 1031, 1455, 1961
BsoBI	CYCGRG	2 cut(s)	247, 273
Bsp1286I	GDGCHC	2 cut(s)	1308, 1675
Bsp143I	GATC	7 cut(s)	1185, 1203, 1506, 1599, 1644, 1885, 1981
Bsp19I	CCATGG	2 cut(s)	1450, 1618
BspACI	CCGC	8 cut(s)	24, 48, 255, 463, 574, 620, 1573, 1958
BspANI	GGCC	5 cut(s)	434, 644, 1031, 1455, 1961
BspCNI	CTCAG	4 cut(s)	475, 967, 1162, 2052
BspFNI	CGCG	1 cut(s)	6
BspHI	TCATGA	1 cut(s)	205
BspLI	GGNNCC	4 cut(s)	977, 1983, 2097, 2200
BspMI	ACCTGC	1 cut(s)	183
BspPI	GGATC	3 cut(s)	1880, 1976, 1989
BspT107I	GGYRCC	1 cut(s)	2198
BsrDI	GCAATG	5 cut(s)	730, 1425, 1662, 1798, 1904
BsrFI	RCCGGY	1 cut(s)	434
BsrI	ACTGG	1 cut(s)	28
BssAI	RCCGGY	1 cut(s)	434
BssECI	CCNNGG	4 cut(s)	1450, 1618, 1941, 2099
BssHII	GCGCGC	1 cut(s)	4
BssMI	GATC	7 cut(s)	1185, 1203, 1506, 1599, 1644, 1885, 1981
BssNI	GRCGYC	1 cut(s)	1196
BssT1I	CCWWGG	2 cut(s)	1450, 1618
Bst2UI	CCWGG	2 cut(s)	1973, 2100
Bst4CI	ACNGT	2 cut(s)	1446, 1550
BstACI	GRCGYC	1 cut(s)	1196
BstC8I	GCNNGC	4 cut(s)	6, 169, 998, 1626
BstDEI	CTNAG	5 cut(s)	240, 483, 954, 1149, 2060
BstDSI	CCRYGG	2 cut(s)	1450, 1618
BstF5I	GGATG	8 cut(s)	576, 582, 643, 669, 736, 1279, 1701, 1748
BstFNI	CGCG	1 cut(s)	6
BstHHI	GCGC	3 cut(s)	6, 8, 2122
BstKTI	GATC	7 cut(s)	1188, 1206, 1509, 1602, 1647, 1888, 1984
BstMAI	GTCTC	3 cut(s)	878, 1173, 1435
BstMBI	GATC	7 cut(s)	1185, 1203, 1506, 1599, 1644, 1885, 1981
BstMWI	GCNNNNNNNGC	4 cut(s)	1550, 1634, 1946, 1955
BstNI	CCWGG	2 cut(s)	1973, 2100
BstNSI	RCATGY	4 cut(s)	953, 1024, 1628, 1716
BstSCI	CCNGG	4 cut(s)	347, 1208, 1971, 2098
BstSLI	GKGCMC	1 cut(s)	1308
BstUI	CGCG	1 cut(s)	6
BstV1I	GCAGC	2 cut(s)	117, 2039
BstX2I	RGATCY	4 cut(s)	1185, 1644, 1885, 1981
BstXI	CCANNNNNNTGG	1 cut(s)	1603
BstYI	RGATCY	4 cut(s)	1185, 1644, 1885, 1981
BsuRI	GGCC	5 cut(s)	434, 644, 1031, 1455, 1961
BtgI	CCRYGG	2 cut(s)	1450, 1618
BtgZI	GCGATG	1 cut(s)	1307
BtrI	CACGTC	1 cut(s)	1309
BtsCI	GGATG	8 cut(s)	576, 582, 643, 669, 736, 1279, 1701, 1748
BtsIMutI	CAGTG	3 cut(s)	1335, 1502, 2057
BveI	ACCTGC	1 cut(s)	183
Cac8I	GCNNGC	4 cut(s)	6, 169, 998, 1626
CaiI	CAGNNNCTG	1 cut(s)	1889
CciI	TCATGA	1 cut(s)	205
CfoI	GCGC	3 cut(s)	6, 8, 2122
Cfr10I	RCCGGY	1 cut(s)	434
Cfr13I	GGNCC	2 cut(s)	976, 2008
CseI	GACGC	1 cut(s)	1550
Csp6I	GTAC	2 cut(s)	244, 1024
CviQI	GTAC	2 cut(s)	244, 1024
DdeI	CTNAG	5 cut(s)	240, 483, 954, 1149, 2060
DpnI	GATC	7 cut(s)	1187, 1205, 1508, 1601, 1646, 1887, 1983
DpnII	GATC	7 cut(s)	1185, 1203, 1506, 1599, 1644, 1885, 1981
DraI	TTTAAA	1 cut(s)	1351
EaeI	YGGCCR	2 cut(s)	432, 1959
Eco130I	CCWWGG	2 cut(s)	1450, 1618
Eco24I	GRGCYC	1 cut(s)	1675
Eco32I	GATATC	2 cut(s)	702, 1342
Eco47I	GGWCC	2 cut(s)	976, 2008
Eco57I	CTGAAG	1 cut(s)	1661
Eco88I	CYCGRG	2 cut(s)	247, 273
EcoRI	GAATTC	5 cut(s)	505, 1381, 1591, 1681, 1779
EcoRII	CCWGG	2 cut(s)	1971, 2098
EcoRV	GATATC	2 cut(s)	702, 1342
EcoT14I	CCWWGG	2 cut(s)	1450, 1618
EcoT22I	ATGCAT	1 cut(s)	2043
EcoT38I	GRGCYC	1 cut(s)	1675
ErhI	CCWWGG	2 cut(s)	1450, 1618
Esp3I	CGTCTC	1 cut(s)	878
FaqI	GGGAC	1 cut(s)	989
FauI	CCCGC	2 cut(s)	31, 1566
FbaI	TGATCA	2 cut(s)	1203, 1599
Fnu4HI	GCNGC	3 cut(s)	131, 1959, 2028
FokI	GGATG	8 cut(s)	583, 589, 650, 676, 743, 1286, 1688, 1755
FriOI	GRGCYC	1 cut(s)	1675
Fsp4HI	GCNGC	3 cut(s)	131, 1959, 2028
FspBI	CTAG	5 cut(s)	192, 693, 1139, 1730, 1925
GlaI	GCGC	3 cut(s)	5, 7, 2121
GluI	GCNGC	3 cut(s)	131, 1959, 2028
GsaI	CCCAGC	2 cut(s)	522, 1836
GsuI	CTGGAG	2 cut(s)	1994, 2169
HaeIII	GGCC	5 cut(s)	434, 644, 1031, 1455, 1961
HapII	CCGG	6 cut(s)	296, 348, 389, 435, 568, 1209
HgaI	GACGC	1 cut(s)	1550
HhaI	GCGC	3 cut(s)	6, 8, 2122
Hin1I	GRCGYC	1 cut(s)	1196
Hin6I	GCGC	3 cut(s)	4, 6, 2120
HinP1I	GCGC	3 cut(s)	4, 6, 2120
HincII	GTYRAC	1 cut(s)	967
HindII	GTYRAC	1 cut(s)	967
HinfI	GANTC	5 cut(s)	122, 1153, 1433, 2113, 2210
HpaII	CCGG	6 cut(s)	296, 348, 389, 435, 568, 1209
HphI	GGTGA	4 cut(s)	449, 1198, 1667, 2219
Hpy166II	GTNNAC	2 cut(s)	411, 967
Hpy188I	TCNGA	9 cut(s)	127, 1152, 1178, 1363, 1380, 1461, 1615, 1641, 1795
Hpy188III	TCNNGA	5 cut(s)	147, 206, 249, 1430, 2148
Hpy8I	GTNNAC	2 cut(s)	411, 967
Hpy99I	CGWCG	1 cut(s)	153
HpyAV	CCTTC	5 cut(s)	728, 1358, 1466, 1831, 2058
HpyCH4III	ACNGT	2 cut(s)	1446, 1550
HpyCH4IV	ACGT	4 cut(s)	151, 887, 1196, 1308
HpyF10VI	GCNNNNNNNGC	4 cut(s)	1550, 1634, 1946, 1955
HpyF3I	CTNAG	5 cut(s)	240, 483, 954, 1149, 2060
HpySE526I	ACGT	4 cut(s)	151, 887, 1196, 1308
Hsp92I	GRCGYC	1 cut(s)	1196
HspAI	GCGC	3 cut(s)	4, 6, 2120
Ksp22I	TGATCA	2 cut(s)	1203, 1599
Kzo9I	GATC	7 cut(s)	1185, 1203, 1506, 1599, 1644, 1885, 1981
LmnI	GCTCC	5 cut(s)	548, 622, 1795, 1901, 1975
Lsp1109I	GCAGC	2 cut(s)	117, 2039
LweI	GCATC	8 cut(s)	154, 375, 408, 561, 654, 1264, 1710, 2169
MaeI	CTAG	5 cut(s)	192, 693, 1139, 1730, 1925
MaeII	ACGT	4 cut(s)	151, 887, 1196, 1308
MaeIII	GTNAC	7 cut(s)	144, 235, 310, 1118, 1496, 1687, 2015
MalI	GATC	7 cut(s)	1187, 1205, 1508, 1601, 1646, 1887, 1983
MboI	GATC	7 cut(s)	1185, 1203, 1506, 1599, 1644, 1885, 1981
MboII	GAAGA	4 cut(s)	592, 1336, 1391, 1654
MfeI	CAATTG	1 cut(s)	970
MflI	RGATCY	4 cut(s)	1185, 1644, 1885, 1981
MhlI	GDGCHC	2 cut(s)	1308, 1675
MmeI	TCCRAC	2 cut(s)	203, 2090
Mph1103I	ATGCAT	1 cut(s)	2043
MseI	TTAA	8 cut(s)	528, 1113, 1218, 1350, 1755, 1815, 1988, 2133
MslI	CAYNNNNRTG	5 cut(s)	1019, 1601, 1623, 1629, 1808
MspI	CCGG	6 cut(s)	296, 348, 389, 435, 568, 1209
MspR9I	CCNGG	4 cut(s)	349, 1210, 1973, 2100
MunI	CAATTG	1 cut(s)	970
Mva1269I	GAATGC	2 cut(s)	1072, 1553
MvaI	CCWGG	2 cut(s)	1973, 2100
MvnI	CGCG	1 cut(s)	6
MwoI	GCNNNNNNNGC	4 cut(s)	1550, 1634, 1946, 1955
NciI	CCSGG	2 cut(s)	349, 1210
NcoI	CCATGG	2 cut(s)	1450, 1618
NdeII	GATC	7 cut(s)	1185, 1203, 1506, 1599, 1644, 1885, 1981
NlaIV	GGNNCC	4 cut(s)	977, 1983, 2097, 2200
NmeAIII	GCCGAG	2 cut(s)	1007, 1966
NmuCI	GTSAC	1 cut(s)	144
NsiI	ATGCAT	1 cut(s)	2043
NspI	RCATGY	4 cut(s)	953, 1024, 1628, 1716
PaeI	GCATGC	1 cut(s)	1628
PaeR7I	CTCGAG	1 cut(s)	247
PagI	TCATGA	1 cut(s)	205
PaqCI	CACCTGC	1 cut(s)	183
PauI	GCGCGC	1 cut(s)	4
PciI	ACATGT	1 cut(s)	1020
PcsI	WCGNNNNNNNCGW	1 cut(s)	413
PctI	GAATGC	2 cut(s)	1072, 1553
PfeI	GAWTC	5 cut(s)	122, 1153, 1433, 2113, 2210
PflMI	CCANNNNNTGG	1 cut(s)	1858
PfoI	TCCNGGA	2 cut(s)	347, 1971
PkrI	GCNGC	3 cut(s)	132, 1960, 2029
PscI	ACATGT	1 cut(s)	1020
PshBI	ATTAAT	2 cut(s)	1113, 1815
PsiI	TTATAA	2 cut(s)	318, 822
Psp6I	CCWGG	2 cut(s)	1971, 2098
PspFI	CCCAGC	2 cut(s)	518, 1832
PspGI	CCWGG	2 cut(s)	1971, 2098
PspN4I	GGNNCC	4 cut(s)	977, 1983, 2097, 2200
PspPI	GGNCC	2 cut(s)	976, 2008
PstNI	CAGNNNCTG	1 cut(s)	1889
PsuI	RGATCY	4 cut(s)	1185, 1644, 1885, 1981
PteI	GCGCGC	1 cut(s)	4
RsaI	GTAC	2 cut(s)	245, 1025
RsaNI	GTAC	2 cut(s)	244, 1024
RseI	CAYNNNNRTG	5 cut(s)	1019, 1601, 1623, 1629, 1808
SaqAI	TTAA	8 cut(s)	528, 1113, 1218, 1350, 1755, 1815, 1988, 2133
SatI	GCNGC	3 cut(s)	131, 1959, 2028
Sau3AI	GATC	7 cut(s)	1185, 1203, 1506, 1599, 1644, 1885, 1981
Sau96I	GGNCC	2 cut(s)	976, 2008
ScaI	AGTACT	1 cut(s)	245
ScrFI	CCNGG	4 cut(s)	349, 1210, 1973, 2100
SduI	GDGCHC	2 cut(s)	1308, 1675
SfaNI	GCATC	8 cut(s)	154, 375, 408, 561, 654, 1264, 1710, 2169
Sfr274I	CTCGAG	1 cut(s)	247
SinI	GGWCC	2 cut(s)	976, 2008
SlaI	CTCGAG	1 cut(s)	247
SmiMI	CAYNNNNRTG	5 cut(s)	1019, 1601, 1623, 1629, 1808
SmlI	CTYRAG	2 cut(s)	179, 247
SmoI	CTYRAG	2 cut(s)	179, 247
SpeI	ACTAGT	1 cut(s)	692
SphI	GCATGC	1 cut(s)	1628
SsiI	CCGC	8 cut(s)	24, 48, 255, 463, 574, 620, 1573, 1958
SspMI	CTAG	5 cut(s)	192, 693, 1139, 1730, 1925
StyD4I	CCNGG	4 cut(s)	347, 1208, 1971, 2098
StyI	CCWWGG	2 cut(s)	1450, 1618
TaaI	ACNGT	2 cut(s)	1446, 1550
TaiI	ACGT	4 cut(s)	154, 890, 1199, 1311
TaqI	TCGA	4 cut(s)	248, 264, 416, 509
TatI	WGTACW	2 cut(s)	243, 1023
TauI	GCSGC	1 cut(s)	1961
TfiI	GAWTC	5 cut(s)	122, 1153, 1433, 2113, 2210
Tru1I	TTAA	8 cut(s)	528, 1113, 1218, 1350, 1755, 1815, 1988, 2133
Tru9I	TTAA	8 cut(s)	528, 1113, 1218, 1350, 1755, 1815, 1988, 2133
TscAI	CASTG	3 cut(s)	1342, 1509, 2064
TseFI	GTSAC	1 cut(s)	144
TseI	GCWGC	2 cut(s)	130, 2027
Tsp45I	GTSAC	1 cut(s)	144
TspDTI	ATGAA	9 cut(s)	194, 593, 747, 879, 880, 1082, 1272, 1491, 1647
TspRI	CASTG	3 cut(s)	1342, 1509, 2064
Van91I	CCANNNNNTGG	1 cut(s)	1858
VpaK11BI	GGWCC	2 cut(s)	976, 2008
VspI	ATTAAT	2 cut(s)	1113, 1815
XapI	RAATTY	5 cut(s)	505, 1381, 1591, 1681, 1779
XceI	RCATGY	4 cut(s)	953, 1024, 1628, 1716
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1969
XhoI	CTCGAG	1 cut(s)	247
XspI	CTAG	5 cut(s)	192, 693, 1139, 1730, 1925
ZraI	GACGTC	1 cut(s)	1197
ZrmI	AGTACT	1 cut(s)	245
Zsp2I	ATGCAT	1 cut(s)	2043

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.