FvH4_5g22090

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0015976
Physical Location & Seq
Reverse (-)
13431128 .. 13431706
579 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g22090.t1

Sequence Viewer

Length: 384 bp
ATGAGCCTAAGTTGCTTGACATGCCAGGTTCTGCAGAGGACGAACTCTTCGGAATCTGAAAGGAGCTACAAACATAGAAAGGCTCAGAAGGCTTGTAATAGGAAGCTATGCTGTGTAAACATGGACAGAAGCTGGTCCGGGAACCTAACTCCGCCGCCTTATTATGAGAAGATAGATAGGTCAGCTCCTTTGTTGGGGGAGCTTGACAAGAAGAAGAAGAATGAGAAAAAGGCAGGGCATCGCCGGCTTTGTAGCACAGGTGGAGTTGCATATGAAGGGAGCACTGAACCAAAGTTGGTGAGGAGCGCTGGAATGAGAAGGGATTGGAGCTTTGAGAATTTGGAACGGCTCAGAAAAGAAAACAAAGGGGGGAACTTCTATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

128

Amino Acids

14.59

Weight (kDa)

9.75

Isoelectric Point (pI)

55.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015976)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G35215 AT5G46770
fragaria_vesca FvH4_5g22090
malus_domestica MD16G1274300.v1.1
prunus_persica Prupe.5G036400_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0209741
rosa_laevigata RLG00000003097
rosa_multiflora Rmu_sc0002616.1_g000018
rosa_roxburghii Rroxscaffold_3G00249110
rosa_rugosa Rorug07G0116000
rosa_samantha Rh7AG249500 Rh7BG243400 Rh7CG265500 Rh7DG255300
rosa_wichuraiana Rw7G021150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 152, 155
AcsI RAATTY 1 cut(s) 337
AfeI AGCGCT 1 cut(s) 307
AfiI CCNNNNNNNGG 1 cut(s) 194
AjnI CCWGG 1 cut(s) 24
AluBI AGCT 6 cut(s) 66, 106, 132, 185, 202, 330
AluI AGCT 6 cut(s) 66, 106, 132, 185, 202, 330
Alw21I GWGCWC 1 cut(s) 284
AlwNI CAGNNNCTG 2 cut(s) 31, 132
Aor51HI AGCGCT 1 cut(s) 307
ApoI RAATTY 1 cut(s) 337
ArsI GACNNNNNNTTYG 2 cut(s) 31, 63
AspLEI GCGC 1 cut(s) 308
AspS9I GGNCC 1 cut(s) 135
AsuC2I CCSGG 1 cut(s) 139
AsuHPI GGTGA 1 cut(s) 310
AvaII GGWCC 1 cut(s) 135
Bbv12I GWGCWC 1 cut(s) 284
BceAI ACGGC 1 cut(s) 362
BciT130I CCWGG 1 cut(s) 26
BcnI CCSGG 1 cut(s) 139
BfmI CTRYAG 1 cut(s) 32
BfoI RGCGCY 1 cut(s) 309
BisI GCNGC 1 cut(s) 155
BlsI GCNGC 1 cut(s) 156
Bme1390I CCNGG 2 cut(s) 26, 139
Bme18I GGWCC 1 cut(s) 135
BmgT120I GGNCC 1 cut(s) 135
BmiI GGNNCC 1 cut(s) 143
BmrFI CCNGG 2 cut(s) 26, 139
BmsI GCATC 1 cut(s) 247
BpuMI CCSGG 1 cut(s) 139
Bsc4I CCNNNNNNNGG 1 cut(s) 194
Bse118I RCCGGY 1 cut(s) 243
BseBI CCWGG 1 cut(s) 26
BseLI CCNNNNNNNGG 1 cut(s) 194
BseMII CTCAG 2 cut(s) 98, 364
BseRI GAGGAG 1 cut(s) 316
BsiHKAI GWGCWC 1 cut(s) 284
BsiSI CCGG 2 cut(s) 138, 244
BslI CCNNNNNNNGG 1 cut(s) 194
Bsp1286I GDGCHC 1 cut(s) 284
BspACI CCGC 2 cut(s) 152, 155
BspCNI CTCAG 2 cut(s) 97, 363
BspLI GGNNCC 1 cut(s) 143
BspMAI CTGCAG 1 cut(s) 36
BsrFI RCCGGY 1 cut(s) 243
BssAI RCCGGY 1 cut(s) 243
Bst2UI CCWGG 1 cut(s) 26
Bst6I CTCTTC 1 cut(s) 52
BstC8I GCNNGC 1 cut(s) 245
BstDEI CTNAG 3 cut(s) 8, 84, 350
BstH2I RGCGCY 1 cut(s) 309
BstHHI GCGC 1 cut(s) 308
BstMWI GCNNNNNNNGC 4 cut(s) 12, 21, 89, 244
BstNI CCWGG 1 cut(s) 26
BstNSI RCATGY 1 cut(s) 24
BstSCI CCNGG 2 cut(s) 24, 137
BstSFI CTRYAG 1 cut(s) 32
BtgZI GCGATG 1 cut(s) 224
BtsIMutI CAGTG 1 cut(s) 282
Cac8I GCNNGC 1 cut(s) 245
CaiI CAGNNNCTG 2 cut(s) 31, 132
CfoI GCGC 1 cut(s) 308
Cfr10I RCCGGY 1 cut(s) 243
Cfr13I GGNCC 1 cut(s) 135
CviAII CATG 2 cut(s) 21, 121
DdeI CTNAG 3 cut(s) 8, 84, 350
Eam1104I CTCTTC 1 cut(s) 52
EarI CTCTTC 1 cut(s) 52
EciI GGCGGA 1 cut(s) 141
Eco47I GGWCC 1 cut(s) 135
Eco47III AGCGCT 1 cut(s) 307
EcoRII CCWGG 1 cut(s) 24
FaeI CATG 2 cut(s) 24, 124
FaiI YATR 7 cut(s) 22, 75, 109, 122, 165, 271, 273
FatI CATG 2 cut(s) 20, 120
FauNDI CATATG 1 cut(s) 271
Fnu4HI GCNGC 1 cut(s) 155
Fsp4HI GCNGC 1 cut(s) 155
GlaI GCGC 1 cut(s) 307
GluI GCNGC 1 cut(s) 155
HaeII RGCGCY 1 cut(s) 309
HapII CCGG 2 cut(s) 138, 244
HhaI GCGC 1 cut(s) 308
Hin1II CATG 2 cut(s) 24, 124
Hin6I GCGC 1 cut(s) 306
HinP1I GCGC 1 cut(s) 306
HinfI GANTC 1 cut(s) 53
HpaII CCGG 2 cut(s) 138, 244
HphI GGTGA 1 cut(s) 310
Hpy166II GTNNAC 1 cut(s) 118
Hpy188I TCNGA 4 cut(s) 52, 58, 87, 353
Hpy8I GTNNAC 1 cut(s) 118
HpyAV CCTTC 3 cut(s) 82, 269, 312
HpyCH4V TGCA 2 cut(s) 34, 269
HpyF10VI GCNNNNNNNGC 4 cut(s) 12, 21, 89, 244
HpyF3I CTNAG 3 cut(s) 8, 84, 350
Hsp92II CATG 2 cut(s) 24, 124
HspAI GCGC 1 cut(s) 306
KroI GCCGGC 1 cut(s) 243
KroNI GCCGGC 1 cut(s) 245
LmnI GCTCC 6 cut(s) 63, 190, 199, 279, 303, 327
LpnPI CCDG 8 cut(s) 11, 38, 118, 151, 219, 243, 257, 294
LweI GCATC 1 cut(s) 247
MboII GAAGA 5 cut(s) 39, 181, 223, 226, 229
MhlI GDGCHC 1 cut(s) 284
MluCI AATT 1 cut(s) 337
MnlI CCTC 2 cut(s) 30, 294
MroNI GCCGGC 1 cut(s) 243
MseI TTAA 1 cut(s) 382
MspI CCGG 2 cut(s) 138, 244
MspR9I CCNGG 2 cut(s) 26, 139
MvaI CCWGG 1 cut(s) 26
MwoI GCNNNNNNNGC 4 cut(s) 12, 21, 89, 244
NaeI GCCGGC 1 cut(s) 245
NciI CCSGG 1 cut(s) 139
NdeI CATATG 1 cut(s) 271
NgoMIV GCCGGC 1 cut(s) 243
NlaIII CATG 2 cut(s) 24, 124
NlaIV GGNNCC 1 cut(s) 143
NspI RCATGY 1 cut(s) 24
PdiI GCCGGC 1 cut(s) 245
PfeI GAWTC 1 cut(s) 53
PfoI TCCNGGA 1 cut(s) 137
PkrI GCNGC 1 cut(s) 156
Psp6I CCWGG 1 cut(s) 24
PspGI CCWGG 1 cut(s) 24
PspN4I GGNNCC 1 cut(s) 143
PspPI GGNCC 1 cut(s) 135
PstI CTGCAG 1 cut(s) 36
PstNI CAGNNNCTG 2 cut(s) 31, 132
SaqAI TTAA 1 cut(s) 382
SatI GCNGC 1 cut(s) 155
Sau96I GGNCC 1 cut(s) 135
ScrFI CCNGG 2 cut(s) 26, 139
SduI GDGCHC 1 cut(s) 284
SfaNI GCATC 1 cut(s) 247
SfcI CTRYAG 1 cut(s) 32
SinI GGWCC 1 cut(s) 135
Sse9I AATT 1 cut(s) 337
SsiI CCGC 2 cut(s) 152, 155
StyD4I CCNGG 2 cut(s) 24, 137
TasI AATT 1 cut(s) 337
TauI GCSGC 1 cut(s) 157
TfiI GAWTC 1 cut(s) 53
Tru1I TTAA 1 cut(s) 382
Tru9I TTAA 1 cut(s) 382
TscAI CASTG 1 cut(s) 289
TspDTI ATGAA 1 cut(s) 288
TspRI CASTG 1 cut(s) 289
VpaK11BI GGWCC 1 cut(s) 135
XapI RAATTY 1 cut(s) 337
XceI RCATGY 1 cut(s) 24
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.