Rroxscaffold_3G00249110

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0015976
Physical Location & Seq
Forward (+)
42671928 .. 42673585
1658 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00249110.1

Sequence Viewer

Length: 549 bp
ATGAGCCTTAATTGCTTGACTTGCCAGGTCCTGCAGAGGACGGATTCTTCGGGCTCCGAAAGGAACTATAAACAAGGCAAGGCTCAGAAGGCATGTAATAGGAAGCTATGCTGTGTAAACATGGACAGAAGCTGGTCCGGAAACCTAACTCCGCCGCCTTATTATGAGACAATAGATCATAGGTCAGCTCCTTTGTTGGGTGAGCATGGCAAGAAGAAGAAGAATGCCCAAAAGGCGGGGCATCGCAGGCTTTGTAGCACAGGTGGAGTTGCATATGAAGGGAGCACTGAACCAAAGTTGGTTAGGAGCGCTGGAATGAGAAGGGATTGGAGCTTTGAGAATTTGGGACGGCTCAGAAAAGAAAGCAAAGGGAGGAACTTATGCGGTAAGAAAAAACAAATTTCATTAAATGATGATGATGATAATGACCTAAGATATTATATAAACATAAAAAGCCATCACGCCAGCTTAAAGAAGATGCTGATAGGGGCACATGCTGAAGATTTCTCATATATGGAAGGAACACAAACACCTCAGAGTTCCGTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

182

Amino Acids

20.51

Weight (kDa)

9.55

Isoelectric Point (pI)

49.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015976)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G35215 AT5G46770
fragaria_vesca FvH4_5g22090
malus_domestica MD16G1274300.v1.1
prunus_persica Prupe.5G036400_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0209741
rosa_laevigata RLG00000003097
rosa_multiflora Rmu_sc0002616.1_g000018
rosa_roxburghii Rroxscaffold_3G00249110
rosa_rugosa Rorug07G0116000
rosa_samantha Rh7AG249500 Rh7BG243400 Rh7CG265500 Rh7DG255300
rosa_wichuraiana Rw7G021150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 137
AciI CCGC 4 cut(s) 152, 155, 236, 384
AcsI RAATTY 2 cut(s) 340, 399
AcuI CTGAAG 1 cut(s) 519
AfeI AGCGCT 1 cut(s) 310
AfiI CCNNNNNNNGG 2 cut(s) 197, 235
AjnI CCWGG 1 cut(s) 24
AluBI AGCT 5 cut(s) 106, 132, 188, 333, 468
AluI AGCT 5 cut(s) 106, 132, 188, 333, 468
Alw21I GWGCWC 1 cut(s) 287
Alw26I GTCTC 1 cut(s) 161
AlwNI CAGNNNCTG 2 cut(s) 31, 132
Aor13HI TCCGGA 1 cut(s) 137
Aor51HI AGCGCT 1 cut(s) 310
ApoI RAATTY 2 cut(s) 340, 399
ArsI GACNNNNNNTTYG 2 cut(s) 31, 63
AspLEI GCGC 1 cut(s) 311
AspS9I GGNCC 2 cut(s) 28, 135
AsuHPI GGTGA 1 cut(s) 212
AvaII GGWCC 2 cut(s) 28, 135
BaeGI GKGCMC 1 cut(s) 493
BanII GRGCYC 1 cut(s) 56
Bbv12I GWGCWC 1 cut(s) 287
BccI CCATC 1 cut(s) 465
BceAI ACGGC 1 cut(s) 365
BciT130I CCWGG 1 cut(s) 26
BcoDI GTCTC 1 cut(s) 161
BfmI CTRYAG 1 cut(s) 32
BfoI RGCGCY 1 cut(s) 312
BglI GCCNNNNNGGC 1 cut(s) 233
BisI GCNGC 1 cut(s) 155
BlsI GCNGC 1 cut(s) 156
Bme1390I CCNGG 1 cut(s) 26
Bme18I GGWCC 2 cut(s) 28, 135
BmgT120I GGNCC 2 cut(s) 28, 135
BmiI GGNNCC 1 cut(s) 55
BmrFI CCNGG 1 cut(s) 26
BmsI GCATC 2 cut(s) 250, 468
BsaWI WCCGGW 1 cut(s) 137
Bsc4I CCNNNNNNNGG 2 cut(s) 197, 235
BseAI TCCGGA 1 cut(s) 137
BseBI CCWGG 1 cut(s) 26
BseLI CCNNNNNNNGG 2 cut(s) 197, 235
BseMII CTCAG 3 cut(s) 98, 367, 548
BseSI GKGCMC 1 cut(s) 493
BsiHKAI GWGCWC 1 cut(s) 287
BsiSI CCGG 1 cut(s) 138
BslFI GGGAC 1 cut(s) 360
BslI CCNNNNNNNGG 2 cut(s) 197, 235
BsmAI GTCTC 1 cut(s) 161
BsmFI GGGAC 1 cut(s) 360
BsmI GAATGC 1 cut(s) 229
Bsp1286I GDGCHC 3 cut(s) 56, 287, 493
Bsp13I TCCGGA 1 cut(s) 137
Bsp143I GATC 1 cut(s) 175
BspACI CCGC 4 cut(s) 152, 155, 236, 384
BspCNI CTCAG 3 cut(s) 97, 366, 547
BspEI TCCGGA 1 cut(s) 137
BspLI GGNNCC 1 cut(s) 55
BspMAI CTGCAG 1 cut(s) 36
BssMI GATC 1 cut(s) 175
Bst2UI CCWGG 1 cut(s) 26
BstC8I GCNNGC 2 cut(s) 248, 466
BstDEI CTNAG 4 cut(s) 84, 353, 431, 534
BstH2I RGCGCY 1 cut(s) 312
BstHHI GCGC 1 cut(s) 311
BstKTI GATC 1 cut(s) 178
BstMAI GTCTC 1 cut(s) 161
BstMBI GATC 1 cut(s) 175
BstMWI GCNNNNNNNGC 5 cut(s) 12, 21, 89, 233, 247
BstNI CCWGG 1 cut(s) 26
BstNSI RCATGY 2 cut(s) 96, 497
BstSCI CCNGG 1 cut(s) 24
BstSFI CTRYAG 1 cut(s) 32
BstSLI GKGCMC 1 cut(s) 493
BtgZI GCGATG 1 cut(s) 227
BtsIMutI CAGTG 1 cut(s) 285
Cac8I GCNNGC 2 cut(s) 248, 466
CaiI CAGNNNCTG 2 cut(s) 31, 132
CfoI GCGC 1 cut(s) 311
Cfr13I GGNCC 2 cut(s) 28, 135
CviAII CATG 4 cut(s) 93, 121, 206, 494
DdeI CTNAG 4 cut(s) 84, 353, 431, 534
DpnI GATC 1 cut(s) 177
DpnII GATC 1 cut(s) 175
EciI GGCGGA 1 cut(s) 141
Eco24I GRGCYC 1 cut(s) 56
Eco47I GGWCC 2 cut(s) 28, 135
Eco47III AGCGCT 1 cut(s) 310
Eco57I CTGAAG 1 cut(s) 519
EcoO109I RGGNCCY 1 cut(s) 28
EcoRII CCWGG 1 cut(s) 24
EcoT38I GRGCYC 1 cut(s) 56
FaeI CATG 4 cut(s) 96, 124, 209, 497
FaqI GGGAC 1 cut(s) 360
FatI CATG 4 cut(s) 92, 120, 205, 493
FauI CCCGC 1 cut(s) 229
FauNDI CATATG 1 cut(s) 274
Fnu4HI GCNGC 1 cut(s) 155
FriOI GRGCYC 1 cut(s) 56
Fsp4HI GCNGC 1 cut(s) 155
GlaI GCGC 1 cut(s) 310
GluI GCNGC 1 cut(s) 155
HaeII RGCGCY 1 cut(s) 312
HapII CCGG 1 cut(s) 138
HhaI GCGC 1 cut(s) 311
Hin1II CATG 4 cut(s) 96, 124, 209, 497
Hin6I GCGC 1 cut(s) 309
HinP1I GCGC 1 cut(s) 309
HinfI GANTC 1 cut(s) 44
HpaII CCGG 1 cut(s) 138
HphI GGTGA 1 cut(s) 212
Hpy166II GTNNAC 1 cut(s) 118
Hpy188I TCNGA 4 cut(s) 58, 87, 356, 537
Hpy188III TCNNGA 1 cut(s) 138
Hpy8I GTNNAC 1 cut(s) 118
HpyAV CCTTC 4 cut(s) 82, 272, 315, 512
HpyCH4V TGCA 2 cut(s) 34, 272
HpyF10VI GCNNNNNNNGC 5 cut(s) 12, 21, 89, 233, 247
HpyF3I CTNAG 4 cut(s) 84, 353, 431, 534
Hsp92II CATG 4 cut(s) 96, 124, 209, 497
HspAI GCGC 1 cut(s) 309
Kpn2I TCCGGA 1 cut(s) 137
Kzo9I GATC 1 cut(s) 175
LmnI GCTCC 5 cut(s) 59, 193, 282, 306, 330
LpnPI CCDG 9 cut(s) 11, 38, 44, 118, 151, 232, 246, 297, 478
LweI GCATC 2 cut(s) 250, 468
MalI GATC 1 cut(s) 177
MboI GATC 1 cut(s) 175
MboII GAAGA 6 cut(s) 39, 226, 229, 232, 487, 512
MhlI GDGCHC 3 cut(s) 56, 287, 493
MluCI AATT 3 cut(s) 10, 340, 399
MnlI CCTC 3 cut(s) 30, 366, 543
MroI TCCGGA 1 cut(s) 137
MseI TTAA 3 cut(s) 9, 407, 470
MspI CCGG 1 cut(s) 138
MspR9I CCNGG 1 cut(s) 26
Mva1269I GAATGC 1 cut(s) 229
MvaI CCWGG 1 cut(s) 26
MwoI GCNNNNNNNGC 5 cut(s) 12, 21, 89, 233, 247
NdeI CATATG 1 cut(s) 274
NdeII GATC 1 cut(s) 175
NlaIII CATG 4 cut(s) 96, 124, 209, 497
NlaIV GGNNCC 1 cut(s) 55
NspI RCATGY 2 cut(s) 96, 497
PctI GAATGC 1 cut(s) 229
PfeI GAWTC 1 cut(s) 44
PkrI GCNGC 1 cut(s) 156
PpuMI RGGWCCY 1 cut(s) 28
Psp5II RGGWCCY 1 cut(s) 28
Psp6I CCWGG 1 cut(s) 24
PspGI CCWGG 1 cut(s) 24
PspN4I GGNNCC 1 cut(s) 55
PspPI GGNCC 2 cut(s) 28, 135
PspPPI RGGWCCY 1 cut(s) 28
PstI CTGCAG 1 cut(s) 36
PstNI CAGNNNCTG 2 cut(s) 31, 132
SaqAI TTAA 3 cut(s) 9, 407, 470
SatI GCNGC 1 cut(s) 155
Sau3AI GATC 1 cut(s) 175
Sau96I GGNCC 2 cut(s) 28, 135
ScrFI CCNGG 1 cut(s) 26
SduI GDGCHC 3 cut(s) 56, 287, 493
SfaNI GCATC 2 cut(s) 250, 468
SfcI CTRYAG 1 cut(s) 32
SinI GGWCC 2 cut(s) 28, 135
Sse9I AATT 3 cut(s) 10, 340, 399
SsiI CCGC 4 cut(s) 152, 155, 236, 384
StyD4I CCNGG 1 cut(s) 24
TasI AATT 3 cut(s) 10, 340, 399
TauI GCSGC 1 cut(s) 157
TfiI GAWTC 1 cut(s) 44
Tru1I TTAA 3 cut(s) 9, 407, 470
Tru9I TTAA 3 cut(s) 9, 407, 470
TscAI CASTG 1 cut(s) 292
TspDTI ATGAA 2 cut(s) 291, 393
TspGWI ACGGA 2 cut(s) 56, 532
TspRI CASTG 1 cut(s) 292
VpaK11BI GGWCC 2 cut(s) 28, 135
XapI RAATTY 2 cut(s) 340, 399
XceI RCATGY 2 cut(s) 96, 497
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.