Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0003580

Physical Location & Seq

Genomic Coordinates Forward (+)

9039118 .. 9041630

Gene Structure 2513 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0116000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1011 bp

ATGGAAGGACTAGAAGGTAACACAAACAACAATGAAGCTGGTTTGAGCATTGAACAAGCTCGAACAAAGTGTGATCAAGATCATGAATATACACTCCCCTCAGCTCACGCTATTGGTCATGATTCATGGCAGCAGGTTGGGTTGATGATGGTGACTGGCTTCAATTGCGGGTACATATTGAGCTTTTCAAATCTGATGCTTGTGCCTTTGGGTTGGACATGGGGTATCATCTGCCTTGTTGTTGTTGGCTTTTATACTGCCTATGCTAACTGGCTTTTGGCTGCTTTTCACTTCATCAATGGCCAAAGATTCATCAGATACAGAGATATTATGGGCTATTTATATGGCAGAGAAATGTATTACATAACATGGGTTTTACAGTTCTCGACCCTACTTCTTGGAAATATGGGTTTCATTCTTCTAGGGGGTAGAGCACTCAAGGAGATTAACTCAGAACTCAGTGATTCTCCACTGAGGCTCCAATACTTTATTGTCATCACCGGAGTGACCTACTTCATATTCGCCTTTTTCATTCCAACAATGTCTAAAATGAGATTTTGGCTTGGACCCTCTACCATTATCACTTTTGCTTACATTGTCATACTCTTGGTGGTACTAGTTAAAGATGGGAAAACAAAGACGACAGAGCGAAATTATGAAATCCATGGAAACAAAGCTGAGAGAGTGTTCAATGCCTTCAATGCAGTTTCAGCTATTATTGTCTGCAACACCTCAGGCTTGCTACTAGAAATACAGTCAACCCTACAGAAGCCAGCAGTCACAAATATGAGGAAAGCTTTATATCTGCAGTATAGTGCAGGGCTCTTATTTTACTATGGAGTCAGCATAGTAGGATACTGGGCATATGGCGCAACCGTATCTGAATACCTTCCTGAAGAGCTAAGTGGTCCTAAATCGGTTAAGGTCCTCATAAACGCTGCCGTGTTTCTACAATCCATAGTCTCACAACATTTTTTACCACCAACAGATGTTTGTTGCACCAATTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005509 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006952 GO:0006970 GO:0006972 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009628 GO:0009651 GO:0009718 GO:0009719 GO:0009725 GO:0009753 GO:0009812 GO:0009813 GO:0009889 GO:0009891 GO:0009893 GO:0010033 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0042221 GO:0042440 GO:0042538 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043425 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0046148 GO:0046283 GO:0046872 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901576 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04016 ko04075 map04016 map04075

Pfam Domains

Protein Families

HLH bHLH-MYC_N

Protein Analysis

336

Amino Acids

37.79

Weight (kDa)

6.99

Isoelectric Point (pI)

30.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aa_trans	PF01490	41 - 323	1.4e-41	Transmembrane amino acid transporter protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003580)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G32640
fragaria_vesca	FvH4_1g13600 FvH4_1g13601 FvH4_4g17280 FvH4_5g22100 FvH4_6g24370 FvH4_6g25910
prunus_persica	Prupe.5G035400_v2.0.a1
pyrus_communis	pycom06g02850 pycom16g24430
rosa_chinensis	RchiOBHm_Chr7g0209751
rosa_laevigata	RLG00000003096 RLG00000008856 RLG00000036489 RLG00000036838
rosa_multiflora	Rmu_sc0000161.1_g000024 Rmu_sc0002616.1_g000020
rosa_roxburghii	Rroxscaffold_1G00006980
rosa_rugosa	Rorug05G0432900 Rorug07G0116000
rosa_samantha	Rh4DG124100 Rh5AG516700 Rh5AG518900 Rh5AG519400 Rh5BG540600 Rh5CG563400 Rh5DG551100 Rh5DG551400 Rh5DG551800 Rh7AG249600 Rh7BG243500 Rh7CG265600 Rh7DG255400
rosa_wichuraiana	Rw0G022750 Rw7G021160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	124
AciI	CCGC	1 cut(s)	168
AcoI	YGGCCR	1 cut(s)	301
AcuI	CTGAAG	1 cut(s)	915
AfaI	GTAC	2 cut(s)	173, 615
AgsI	TTSAA	5 cut(s)	53, 163, 189, 691, 700
AhlI	ACTAGT	1 cut(s)	616
AleI	CACNNNNGTG	1 cut(s)	503
AluBI	AGCT	8 cut(s)	38, 59, 104, 183, 677, 713, 797, 901
AluI	AGCT	8 cut(s)	38, 59, 104, 183, 677, 713, 797, 901
Alw21I	GWGCWC	1 cut(s)	436
Alw26I	GTCTC	1 cut(s)	967
AoxI	GGCC	1 cut(s)	301
ApeKI	GCWGC	3 cut(s)	130, 281, 938
Asp700I	GAANNNNTTC	1 cut(s)	888
AspLEI	GCGC	1 cut(s)	872
AspS9I	GGNCC	3 cut(s)	566, 908, 925
AsuHPI	GGTGA	2 cut(s)	163, 490
AvaII	GGWCC	3 cut(s)	566, 908, 925
AxyI	CCTNAGG	1 cut(s)	733
BalI	TGGCCA	1 cut(s)	303
BanII	GRGCYC	1 cut(s)	825
Bbv12I	GWGCWC	1 cut(s)	436
BbvCI	CCTCAGC	1 cut(s)	100
BbvI	GCAGC	3 cut(s)	142, 268, 925
BccI	CCATC	2 cut(s)	142, 620
BceAI	ACGGC	1 cut(s)	926
BciVI	GTATCC	1 cut(s)	848
BclI	TGATCA	1 cut(s)	73
BcoDI	GTCTC	1 cut(s)	967
BcuI	ACTAGT	1 cut(s)	616
BfaI	CTAG	4 cut(s)	11, 422, 617, 746
BfmI	CTRYAG	2 cut(s)	764, 806
BfuAI	ACCTGC	1 cut(s)	124
BfuI	GTATCC	1 cut(s)	848
BisI	GCNGC	3 cut(s)	131, 282, 939
BlsI	GCNGC	3 cut(s)	132, 283, 940
Bme18I	GGWCC	3 cut(s)	566, 908, 925
BmgT120I	GGNCC	3 cut(s)	566, 908, 925
BmiI	GGNNCC	2 cut(s)	479, 568
BmrI	ACTGGG	1 cut(s)	868
BmsI	GCATC	1 cut(s)	186
BmuI	ACTGGG	1 cut(s)	868
BplI	GAGNNNNNCTC	2 cut(s)	434, 466
Bpu10I	CCTNAGC	1 cut(s)	100
BpuEI	CTTGAG	1 cut(s)	422
BsaBI	GATNNNNATC	1 cut(s)	78
BsaJI	CCNNGG	1 cut(s)	664
BsaWI	WCCGGW	1 cut(s)	500
BsaXI	ACNNNNNCTCC	2 cut(s)	462, 492
Bse1I	ACTGG	3 cut(s)	160, 275, 863
Bse21I	CCTNAGG	1 cut(s)	733
Bse8I	GATNNNNATC	1 cut(s)	78
BseDI	CCNNGG	1 cut(s)	664
BseJI	GATNNNNATC	1 cut(s)	78
BseMII	CTCAG	6 cut(s)	114, 464, 465, 472, 669, 747
BseNI	ACTGG	3 cut(s)	160, 275, 863
BseXI	GCAGC	3 cut(s)	142, 268, 925
BsgI	GTGCAG	1 cut(s)	837
BshFI	GGCC	1 cut(s)	303
BsiHKAI	GWGCWC	1 cut(s)	436
BsiSI	CCGG	1 cut(s)	501
BsmAI	GTCTC	1 cut(s)	967
BsnI	GGCC	1 cut(s)	303
Bsp1286I	GDGCHC	2 cut(s)	436, 825
Bsp143I	GATC	2 cut(s)	73, 79
Bsp19I	CCATGG	1 cut(s)	664
BspACI	CCGC	1 cut(s)	168
BspANI	GGCC	1 cut(s)	303
BspCNI	CTCAG	6 cut(s)	113, 464, 465, 471, 670, 746
BspHI	TCATGA	3 cut(s)	82, 118, 1007
BspLI	GGNNCC	2 cut(s)	479, 568
BspMAI	CTGCAG	1 cut(s)	810
BspMI	ACCTGC	1 cut(s)	124
BspQI	GCTCTTC	1 cut(s)	891
BsrI	ACTGG	3 cut(s)	160, 275, 863
BssECI	CCNNGG	1 cut(s)	664
BssMI	GATC	2 cut(s)	73, 79
BssT1I	CCWWGG	1 cut(s)	664
Bst4CI	ACNGT	3 cut(s)	381, 756, 877
Bst6I	CTCTTC	1 cut(s)	891
BstC8I	GCNNGC	2 cut(s)	740, 774
BstDEI	CTNAG	7 cut(s)	100, 451, 458, 473, 678, 733, 902
BstDSI	CCRYGG	1 cut(s)	664
BstHHI	GCGC	1 cut(s)	872
BstKTI	GATC	2 cut(s)	76, 82
BstMAI	GTCTC	1 cut(s)	967
BstMBI	GATC	2 cut(s)	73, 79
BstMWI	GCNNNNNNNGC	4 cut(s)	165, 701, 710, 869
BstSFI	CTRYAG	2 cut(s)	764, 806
BstV1I	GCAGC	3 cut(s)	142, 268, 925
Bsu36I	CCTNAGG	1 cut(s)	733
BsuI	GTATCC	1 cut(s)	848
BsuRI	GGCC	1 cut(s)	303
BtgI	CCRYGG	1 cut(s)	664
BtsIMutI	CAGTG	2 cut(s)	466, 470
BveI	ACCTGC	1 cut(s)	124
Cac8I	GCNNGC	2 cut(s)	740, 774
CciI	TCATGA	3 cut(s)	82, 118, 1007
CfoI	GCGC	1 cut(s)	872
Cfr13I	GGNCC	3 cut(s)	566, 908, 925
Csp6I	GTAC	2 cut(s)	172, 614
CviAII	CATG	7 cut(s)	83, 119, 126, 219, 369, 665, 1008
CviQI	GTAC	2 cut(s)	172, 614
DdeI	CTNAG	7 cut(s)	100, 451, 458, 473, 678, 733, 902
DpnI	GATC	2 cut(s)	75, 81
DpnII	GATC	2 cut(s)	73, 79
EaeI	YGGCCR	1 cut(s)	301
Eam1104I	CTCTTC	1 cut(s)	891
EarI	CTCTTC	1 cut(s)	891
Eco130I	CCWWGG	1 cut(s)	664
Eco24I	GRGCYC	1 cut(s)	825
Eco47I	GGWCC	3 cut(s)	566, 908, 925
Eco57I	CTGAAG	1 cut(s)	915
Eco81I	CCTNAGG	1 cut(s)	733
EcoO109I	RGGNCCY	1 cut(s)	925
EcoT14I	CCWWGG	1 cut(s)	664
EcoT38I	GRGCYC	1 cut(s)	825
ErhI	CCWWGG	1 cut(s)	664
FaeI	CATG	7 cut(s)	86, 122, 129, 222, 372, 668, 1011
FatI	CATG	7 cut(s)	82, 118, 125, 218, 368, 664, 1007
FauI	CCCGC	1 cut(s)	161
FauNDI	CATATG	1 cut(s)	865
FbaI	TGATCA	1 cut(s)	73
Fnu4HI	GCNGC	3 cut(s)	131, 282, 939
FriOI	GRGCYC	1 cut(s)	825
Fsp4HI	GCNGC	3 cut(s)	131, 282, 939
FspBI	CTAG	4 cut(s)	11, 422, 617, 746
GlaI	GCGC	1 cut(s)	871
GluI	GCNGC	3 cut(s)	131, 282, 939
HaeIII	GGCC	1 cut(s)	303
HapII	CCGG	1 cut(s)	501
HhaI	GCGC	1 cut(s)	872
Hin1II	CATG	7 cut(s)	86, 122, 129, 222, 372, 668, 1011
Hin6I	GCGC	1 cut(s)	870
HinP1I	GCGC	1 cut(s)	870
HincII	GTYRAC	1 cut(s)	759
HindII	GTYRAC	1 cut(s)	759
HindIII	AAGCTT	1 cut(s)	795
HinfI	GANTC	4 cut(s)	122, 309, 464, 840
HpaII	CCGG	1 cut(s)	501
HphI	GGTGA	2 cut(s)	163, 490
Hpy166II	GTNNAC	1 cut(s)	759
Hpy188I	TCNGA	4 cut(s)	195, 317, 454, 883
Hpy188III	TCNNGA	6 cut(s)	77, 83, 119, 385, 893, 1008
Hpy8I	GTNNAC	1 cut(s)	759
HpyAV	CCTTC	3 cut(s)	8, 706, 899
HpyCH4III	ACNGT	3 cut(s)	381, 756, 877
HpyCH4V	TGCA	5 cut(s)	704, 726, 808, 818, 999
HpyF10VI	GCNNNNNNNGC	4 cut(s)	165, 701, 710, 869
HpyF3I	CTNAG	7 cut(s)	100, 451, 458, 473, 678, 733, 902
Hsp92II	CATG	7 cut(s)	86, 122, 129, 222, 372, 668, 1011
HspAI	GCGC	1 cut(s)	870
Ksp22I	TGATCA	1 cut(s)	73
Kzo9I	GATC	2 cut(s)	73, 79
LguI	GCTCTTC	1 cut(s)	891
LmnI	GCTCC	1 cut(s)	483
Lsp1109I	GCAGC	3 cut(s)	142, 268, 925
LweI	GCATC	1 cut(s)	186
MaeI	CTAG	4 cut(s)	11, 422, 617, 746
MaeIII	GTNAC	4 cut(s)	17, 151, 505, 778
MalI	GATC	2 cut(s)	75, 81
MboI	GATC	2 cut(s)	73, 79
MboII	GAAGA	2 cut(s)	410, 908
MfeI	CAATTG	1 cut(s)	163
MhlI	GDGCHC	2 cut(s)	436, 825
MlsI	TGGCCA	1 cut(s)	303
MluCI	AATT	3 cut(s)	163, 652, 1003
MluNI	TGGCCA	1 cut(s)	303
MlyI	GAGTC	1 cut(s)	849
MmeI	TCCRAC	2 cut(s)	194, 560
MnlI	CCTC	6 cut(s)	109, 468, 580, 742, 783, 938
Mox20I	TGGCCA	1 cut(s)	303
MroXI	GAANNNNTTC	1 cut(s)	888
MscI	TGGCCA	1 cut(s)	303
MseI	TTAA	3 cut(s)	447, 621, 921
MslI	CAYNNNNRTG	2 cut(s)	503, 785
Msp20I	TGGCCA	1 cut(s)	303
MspI	CCGG	1 cut(s)	501
MunI	CAATTG	1 cut(s)	163
MwoI	GCNNNNNNNGC	4 cut(s)	165, 701, 710, 869
NcoI	CCATGG	1 cut(s)	664
NdeI	CATATG	1 cut(s)	865
NdeII	GATC	2 cut(s)	73, 79
NlaIII	CATG	7 cut(s)	86, 122, 129, 222, 372, 668, 1011
NlaIV	GGNNCC	2 cut(s)	479, 568
NmuCI	GTSAC	3 cut(s)	151, 505, 778
OliI	CACNNNNGTG	1 cut(s)	503
PagI	TCATGA	3 cut(s)	82, 118, 1007
PciSI	GCTCTTC	1 cut(s)	891
PdmI	GAANNNNTTC	1 cut(s)	888
PfeI	GAWTC	3 cut(s)	122, 309, 464
PkrI	GCNGC	3 cut(s)	132, 283, 940
PleI	GAGTC	1 cut(s)	848
PpsI	GAGTC	1 cut(s)	848
PpuMI	RGGWCCY	1 cut(s)	925
Psp5II	RGGWCCY	1 cut(s)	925
PspN4I	GGNNCC	2 cut(s)	479, 568
PspPI	GGNCC	3 cut(s)	566, 908, 925
PspPPI	RGGWCCY	1 cut(s)	925
PstI	CTGCAG	1 cut(s)	810
RsaI	GTAC	2 cut(s)	173, 615
RsaNI	GTAC	2 cut(s)	172, 614
RseI	CAYNNNNRTG	2 cut(s)	503, 785
SapI	GCTCTTC	1 cut(s)	891
SaqAI	TTAA	3 cut(s)	447, 621, 921
SatI	GCNGC	3 cut(s)	131, 282, 939
Sau3AI	GATC	2 cut(s)	73, 79
Sau96I	GGNCC	3 cut(s)	566, 908, 925
SchI	GAGTC	1 cut(s)	849
SduI	GDGCHC	2 cut(s)	436, 825
SfaNI	GCATC	1 cut(s)	186
SfcI	CTRYAG	2 cut(s)	764, 806
SinI	GGWCC	3 cut(s)	566, 908, 925
SmiMI	CAYNNNNRTG	2 cut(s)	503, 785
SmlI	CTYRAG	1 cut(s)	437
SmoI	CTYRAG	1 cut(s)	437
SpeI	ACTAGT	1 cut(s)	616
Sse9I	AATT	3 cut(s)	163, 652, 1003
SsiI	CCGC	1 cut(s)	168
SspMI	CTAG	4 cut(s)	11, 422, 617, 746
StyI	CCWWGG	1 cut(s)	664
TaaI	ACNGT	3 cut(s)	381, 756, 877
TaqI	TCGA	2 cut(s)	61, 386
TasI	AATT	3 cut(s)	163, 652, 1003
TfiI	GAWTC	3 cut(s)	122, 309, 464
Tru1I	TTAA	3 cut(s)	447, 621, 921
Tru9I	TTAA	3 cut(s)	447, 621, 921
TscAI	CASTG	2 cut(s)	466, 477
TseFI	GTSAC	3 cut(s)	151, 505, 778
TseI	GCWGC	3 cut(s)	130, 281, 938
Tsp45I	GTSAC	3 cut(s)	151, 505, 778
TspRI	CASTG	2 cut(s)	466, 477
VpaK11BI	GGWCC	3 cut(s)	566, 908, 925
XmnI	GAANNNNTTC	1 cut(s)	888
XspI	CTAG	4 cut(s)	11, 422, 617, 746

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.