Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0003580

Physical Location & Seq

Genomic Coordinates Forward (+)

7488565 .. 7488816

Gene Structure 252 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g13601.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 252 bp

ATGGCAGCGCCACCGATCAAGGCGAGAGTGAACGGCGTCGTCGAGTTGGGCTCAACGGAGCTCATATTCCAAAGCTCGGATTTGATGAACAAGGTCCTGGTTTTATTTGACTTCAACAATCTTGAAGTCGGTTCTTGGCCTATGGACGGCGCCGCCGATCAGGGCGAGAGCGACCCGTCGTCGCTCTGGATCAACGACAACCCGTCCAACACAATCAAAGTCGTCAAAGAATCAGTCAGCAACTCAGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005509 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006952 GO:0006970 GO:0006972 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009628 GO:0009651 GO:0009718 GO:0009719 GO:0009725 GO:0009753 GO:0009812 GO:0009813 GO:0009889 GO:0009891 GO:0009893 GO:0010033 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0042221 GO:0042440 GO:0042538 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043425 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0046148 GO:0046283 GO:0046872 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901576 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04016 ko04075 map04016 map04075

Pfam Domains

Protein Families

HLH bHLH-MYC_N

Protein Analysis

84

Amino Acids

8.89

Weight (kDa)

4.18

Isoelectric Point (pI)

31.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003580)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G32640
fragaria_vesca	FvH4_1g13600 FvH4_1g13601 FvH4_4g17280 FvH4_5g22100 FvH4_6g24370 FvH4_6g25910
prunus_persica	Prupe.5G035400_v2.0.a1
pyrus_communis	pycom06g02850 pycom16g24430
rosa_chinensis	RchiOBHm_Chr7g0209751
rosa_laevigata	RLG00000003096 RLG00000008856 RLG00000036489 RLG00000036838
rosa_multiflora	Rmu_sc0000161.1_g000024 Rmu_sc0002616.1_g000020
rosa_roxburghii	Rroxscaffold_1G00006980
rosa_rugosa	Rorug05G0432900 Rorug07G0116000
rosa_samantha	Rh4DG124100 Rh5AG516700 Rh5AG518900 Rh5AG519400 Rh5BG540600 Rh5CG563400 Rh5DG551100 Rh5DG551400 Rh5DG551800 Rh7AG249600 Rh7BG243500 Rh7CG265600 Rh7DG255400
rosa_wichuraiana	Rw0G022750 Rw7G021160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	149
AciI	CCGC	1 cut(s)	153
AclWI	GGATC	1 cut(s)	197
AcyI	GRCGYC	2 cut(s)	36, 150
AfiI	CCNNNNNNNGG	2 cut(s)	76, 146
AgsI	TTSAA	2 cut(s)	115, 125
AhdI	GACNNNNNGTC	2 cut(s)	178, 202
AjnI	CCWGG	1 cut(s)	96
AluBI	AGCT	2 cut(s)	61, 75
AluI	AGCT	2 cut(s)	61, 75
Alw21I	GWGCWC	1 cut(s)	63
AlwI	GGATC	1 cut(s)	197
AoxI	GGCC	1 cut(s)	137
ApeKI	GCWGC	1 cut(s)	5
ArsI	GACNNNNNNTTYG	2 cut(s)	219, 251
AspLEI	GCGC	2 cut(s)	10, 152
AspS9I	GGNCC	1 cut(s)	94
AvaII	GGWCC	1 cut(s)	94
BanI	GGYRCC	1 cut(s)	149
BanII	GRGCYC	2 cut(s)	53, 63
Bbv12I	GWGCWC	1 cut(s)	63
BbvI	GCAGC	1 cut(s)	17
BceAI	ACGGC	2 cut(s)	49, 163
BciT130I	CCWGG	1 cut(s)	98
BfoI	RGCGCY	2 cut(s)	11, 153
BisI	GCNGC	2 cut(s)	6, 153
BlsI	GCNGC	2 cut(s)	7, 154
Bme1390I	CCNGG	1 cut(s)	98
Bme18I	GGWCC	1 cut(s)	94
BmeRI	GACNNNNNGTC	2 cut(s)	178, 202
BmgT120I	GGNCC	1 cut(s)	94
BmiI	GGNNCC	1 cut(s)	151
BmrFI	CCNGG	1 cut(s)	98
BplI	GAGNNNNNCTC	2 cut(s)	35, 67
BsaHI	GRCGYC	2 cut(s)	36, 150
Bsc4I	CCNNNNNNNGG	2 cut(s)	76, 146
BseBI	CCWGG	1 cut(s)	98
BseLI	CCNNNNNNNGG	2 cut(s)	76, 146
BseXI	GCAGC	1 cut(s)	17
BshFI	GGCC	1 cut(s)	139
BshNI	GGYRCC	1 cut(s)	149
BsiHKAI	GWGCWC	1 cut(s)	63
BslI	CCNNNNNNNGG	2 cut(s)	76, 146
BsnI	GGCC	1 cut(s)	139
Bsp1286I	GDGCHC	2 cut(s)	53, 63
Bsp143I	GATC	3 cut(s)	15, 157, 189
BspACI	CCGC	1 cut(s)	153
BspANI	GGCC	1 cut(s)	139
BspLI	GGNNCC	1 cut(s)	151
BspPI	GGATC	1 cut(s)	197
BspT107I	GGYRCC	1 cut(s)	149
BssMI	GATC	3 cut(s)	15, 157, 189
BssNI	GRCGYC	2 cut(s)	36, 150
Bst2UI	CCWGG	1 cut(s)	98
BstACI	GRCGYC	2 cut(s)	36, 150
BstDEI	CTNAG	1 cut(s)	244
BstH2I	RGCGCY	2 cut(s)	11, 153
BstHHI	GCGC	2 cut(s)	10, 152
BstKTI	GATC	3 cut(s)	18, 160, 192
BstMBI	GATC	3 cut(s)	15, 157, 189
BstNI	CCWGG	1 cut(s)	98
BstSCI	CCNGG	1 cut(s)	96
BstV1I	GCAGC	1 cut(s)	17
BsuRI	GGCC	1 cut(s)	139
CfoI	GCGC	2 cut(s)	10, 152
Cfr13I	GGNCC	1 cut(s)	94
CseI	GACGC	1 cut(s)	25
CviJI	RGCY	4 cut(s)	51, 61, 75, 139
CviKI_1	RGCY	4 cut(s)	51, 61, 75, 139
DdeI	CTNAG	1 cut(s)	244
DinI	GGCGCC	1 cut(s)	151
DpnI	GATC	3 cut(s)	17, 159, 191
DpnII	GATC	3 cut(s)	15, 157, 189
DriI	GACNNNNNGTC	2 cut(s)	178, 202
Eam1105I	GACNNNNNGTC	2 cut(s)	178, 202
Ecl136II	GAGCTC	1 cut(s)	61
Eco24I	GRGCYC	2 cut(s)	53, 63
Eco47I	GGWCC	1 cut(s)	94
Eco53kI	GAGCTC	1 cut(s)	61
EcoICRI	GAGCTC	1 cut(s)	61
EcoO109I	RGGNCCY	1 cut(s)	94
EcoRII	CCWGG	1 cut(s)	96
EcoT38I	GRGCYC	2 cut(s)	53, 63
EgeI	GGCGCC	1 cut(s)	151
EheI	GGCGCC	1 cut(s)	151
FaiI	YATR	3 cut(s)	65, 143, 250
Fnu4HI	GCNGC	2 cut(s)	6, 153
FriOI	GRGCYC	2 cut(s)	53, 63
Fsp4HI	GCNGC	2 cut(s)	6, 153
GlaI	GCGC	2 cut(s)	9, 151
GluI	GCNGC	2 cut(s)	6, 153
HaeII	RGCGCY	2 cut(s)	11, 153
HaeIII	GGCC	1 cut(s)	139
HgaI	GACGC	1 cut(s)	25
HhaI	GCGC	2 cut(s)	10, 152
Hin1I	GRCGYC	2 cut(s)	36, 150
Hin6I	GCGC	2 cut(s)	8, 150
HinP1I	GCGC	2 cut(s)	8, 150
HinfI	GANTC	1 cut(s)	230
Hpy166II	GTNNAC	1 cut(s)	31
Hpy188I	TCNGA	1 cut(s)	79
Hpy188III	TCNNGA	2 cut(s)	122, 187
Hpy8I	GTNNAC	1 cut(s)	31
Hpy99I	CGWCG	4 cut(s)	41, 44, 181, 184
HpyF3I	CTNAG	1 cut(s)	244
Hsp92I	GRCGYC	2 cut(s)	36, 150
HspAI	GCGC	2 cut(s)	8, 150
KasI	GGCGCC	1 cut(s)	149
Kzo9I	GATC	3 cut(s)	15, 157, 189
LmnI	GCTCC	1 cut(s)	58
LpnPI	CCDG	4 cut(s)	83, 110, 146, 172
Lsp1109I	GCAGC	1 cut(s)	17
MalI	GATC	3 cut(s)	17, 159, 191
MboI	GATC	3 cut(s)	15, 157, 189
MhlI	GDGCHC	2 cut(s)	53, 63
Mly113I	GGCGCC	1 cut(s)	150
MmeI	TCCRAC	1 cut(s)	231
MspR9I	CCNGG	1 cut(s)	98
MvaI	CCWGG	1 cut(s)	98
NarI	GGCGCC	1 cut(s)	150
NdeII	GATC	3 cut(s)	15, 157, 189
NlaIV	GGNNCC	1 cut(s)	151
PcsI	WCGNNNNNNNCGW	2 cut(s)	39, 153
PfeI	GAWTC	1 cut(s)	230
PkrI	GCNGC	2 cut(s)	7, 154
PluTI	GGCGCC	1 cut(s)	153
PpuMI	RGGWCCY	1 cut(s)	94
Psp124BI	GAGCTC	1 cut(s)	63
Psp5II	RGGWCCY	1 cut(s)	94
Psp6I	CCWGG	1 cut(s)	96
PspGI	CCWGG	1 cut(s)	96
PspN4I	GGNNCC	1 cut(s)	151
PspPI	GGNCC	1 cut(s)	94
PspPPI	RGGWCCY	1 cut(s)	94
SacI	GAGCTC	1 cut(s)	63
SatI	GCNGC	2 cut(s)	6, 153
Sau3AI	GATC	3 cut(s)	15, 157, 189
Sau96I	GGNCC	1 cut(s)	94
ScrFI	CCNGG	1 cut(s)	98
SduI	GDGCHC	2 cut(s)	53, 63
SetI	ASST	3 cut(s)	63, 77, 96
SfoI	GGCGCC	1 cut(s)	151
SinI	GGWCC	1 cut(s)	94
SsiI	CCGC	1 cut(s)	153
SspDI	GGCGCC	1 cut(s)	149
SstI	GAGCTC	1 cut(s)	63
StyD4I	CCNGG	1 cut(s)	96
TaqI	TCGA	1 cut(s)	42
TauI	GCSGC	1 cut(s)	155
TfiI	GAWTC	1 cut(s)	230
TseI	GCWGC	1 cut(s)	5
TspDTI	ATGAA	1 cut(s)	101
TspGWI	ACGGA	1 cut(s)	71
VpaK11BI	GGWCC	1 cut(s)	94

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.