Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0003580

Physical Location & Seq

Genomic Coordinates Reverse (-)

8952680 .. 8955589

Gene Structure 2910 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00006980.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 396 bp

ATGGGGCTCTCTCATTTGTTGTCACAGAAGCCAAAGATTGGTCAGAGAGCACTTGGAGAAAAAGACATTGGGGGAGGAACCATAGCTCAGAGCTTGTTGGTAATGGGGTTCATGGGCCATTGGCTCTTCCAGAAGATAGGGTTCGAAAGCTTGTATGGTGGTGGTGGCGGCGGTGATCTGTATACCTTTTATGGTAAGAAAGTGCCGAGAGACCTCAACTCTTTGATTTCGTGGGCCGACACCAACTCAAAGGACGACGTTGTAGATAAGGAGGTCACCGATACAAAATGGTTCTTCCTTGTTTCCATGACCCGTAACTTTGTCAACGGTGGCGGGTTGCCGAGTCGCTTTTTTCATTCCGCCGCCTCGTCGTGCGAGTGGGCTAGACAAGGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005509 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006952 GO:0006970 GO:0006972 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009628 GO:0009651 GO:0009718 GO:0009719 GO:0009725 GO:0009753 GO:0009812 GO:0009813 GO:0009889 GO:0009891 GO:0009893 GO:0010033 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0042221 GO:0042440 GO:0042538 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043425 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0046148 GO:0046283 GO:0046872 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901576 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04016 ko04075 map04016 map04075

Pfam Domains

Protein Families

HLH bHLH-MYC_N

Protein Analysis

131

Amino Acids

14.33

Weight (kDa)

8.76

Isoelectric Point (pI)

21.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
bHLH-MYC_N	PF14215	66 - 121	9.6e-07	bHLH-MYC and R2R3-MYB transcription factors N-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0003580)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G32640
fragaria_vesca	FvH4_1g13600 FvH4_1g13601 FvH4_4g17280 FvH4_5g22100 FvH4_6g24370 FvH4_6g25910
prunus_persica	Prupe.5G035400_v2.0.a1
pyrus_communis	pycom06g02850 pycom16g24430
rosa_chinensis	RchiOBHm_Chr7g0209751
rosa_laevigata	RLG00000003096 RLG00000008856 RLG00000036489 RLG00000036838
rosa_multiflora	Rmu_sc0000161.1_g000024 Rmu_sc0002616.1_g000020
rosa_roxburghii	Rroxscaffold_1G00006980
rosa_rugosa	Rorug05G0432900 Rorug07G0116000
rosa_samantha	Rh4DG124100 Rh5AG516700 Rh5AG518900 Rh5AG519400 Rh5BG540600 Rh5CG563400 Rh5DG551100 Rh5DG551400 Rh5DG551800 Rh7AG249600 Rh7BG243500 Rh7CG265600 Rh7DG255400
rosa_wichuraiana	Rw0G022750 Rw7G021160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	38
AccI	GTMKAC	1 cut(s)	182
AciI	CCGC	5 cut(s)	168, 171, 333, 360, 363
AfiI	CCNNNNNNNGG	1 cut(s)	38
AjuI	GAANNNNNNNTTGG	2 cut(s)	51, 83
AluBI	AGCT	3 cut(s)	86, 93, 150
AluI	AGCT	3 cut(s)	86, 93, 150
Alw21I	GWGCWC	1 cut(s)	52
Alw26I	GTCTC	1 cut(s)	204
AoxI	GGCC	2 cut(s)	115, 234
AspS9I	GGNCC	2 cut(s)	115, 234
AsuHPI	GGTGA	2 cut(s)	185, 268
AsuII	TTCGAA	1 cut(s)	144
BanII	GRGCYC	1 cut(s)	9
Bbv12I	GWGCWC	1 cut(s)	52
BcoDI	GTCTC	1 cut(s)	204
BfaI	CTAG	1 cut(s)	384
BisI	GCNGC	2 cut(s)	169, 363
BlsI	GCNGC	2 cut(s)	170, 364
BmgT120I	GGNCC	2 cut(s)	115, 234
BmiI	GGNNCC	1 cut(s)	79
Bpu14I	TTCGAA	1 cut(s)	144
BsaI	GGTCTC	1 cut(s)	204
Bsc4I	CCNNNNNNNGG	1 cut(s)	38
BseLI	CCNNNNNNNGG	1 cut(s)	38
BseMII	CTCAG	1 cut(s)	101
BshFI	GGCC	2 cut(s)	117, 236
BsiHKAI	GWGCWC	1 cut(s)	52
BslI	CCNNNNNNNGG	1 cut(s)	38
BsmAI	GTCTC	1 cut(s)	204
BsnI	GGCC	2 cut(s)	117, 236
Bso31I	GGTCTC	1 cut(s)	204
Bsp119I	TTCGAA	1 cut(s)	144
Bsp1286I	GDGCHC	2 cut(s)	9, 52
Bsp143I	GATC	1 cut(s)	175
BspACI	CCGC	5 cut(s)	168, 171, 333, 360, 363
BspANI	GGCC	2 cut(s)	117, 236
BspCNI	CTCAG	1 cut(s)	100
BspLI	GGNNCC	1 cut(s)	79
BspQI	GCTCTTC	1 cut(s)	131
BspT104I	TTCGAA	1 cut(s)	144
BspTNI	GGTCTC	1 cut(s)	204
BssMI	GATC	1 cut(s)	175
BssNAI	GTATAC	1 cut(s)	183
Bst1107I	GTATAC	1 cut(s)	183
Bst4CI	ACNGT	1 cut(s)	329
Bst6I	CTCTTC	1 cut(s)	131
BstBI	TTCGAA	1 cut(s)	144
BstDEI	CTNAG	1 cut(s)	87
BstEII	GGTNACC	1 cut(s)	274
BstKTI	GATC	1 cut(s)	178
BstMAI	GTCTC	1 cut(s)	204
BstMBI	GATC	1 cut(s)	175
BstPI	GGTNACC	1 cut(s)	274
BstZ17I	GTATAC	1 cut(s)	183
BsuRI	GGCC	2 cut(s)	117, 236
Cfr13I	GGNCC	2 cut(s)	115, 234
CviAII	CATG	2 cut(s)	112, 307
CviJI	RGCY	9 cut(s)	7, 31, 86, 93, 117, 124, 150, 236, 383
CviKI_1	RGCY	9 cut(s)	7, 31, 86, 93, 117, 124, 150, 236, 383
DdeI	CTNAG	1 cut(s)	87
DpnI	GATC	1 cut(s)	177
DpnII	GATC	1 cut(s)	175
Eam1104I	CTCTTC	1 cut(s)	131
EarI	CTCTTC	1 cut(s)	131
EciI	GGCGGA	1 cut(s)	349
Eco24I	GRGCYC	1 cut(s)	9
Eco31I	GGTCTC	1 cut(s)	204
Eco91I	GGTNACC	1 cut(s)	274
EcoO65I	GGTNACC	1 cut(s)	274
EcoT38I	GRGCYC	1 cut(s)	9
FaeI	CATG	2 cut(s)	115, 310
FaiI	YATR	6 cut(s)	83, 113, 156, 183, 192, 308
FatI	CATG	2 cut(s)	111, 306
FauI	CCCGC	1 cut(s)	326
FblI	GTMKAC	1 cut(s)	182
Fnu4HI	GCNGC	2 cut(s)	169, 363
FriOI	GRGCYC	1 cut(s)	9
Fsp4HI	GCNGC	2 cut(s)	169, 363
FspBI	CTAG	1 cut(s)	384
GluI	GCNGC	2 cut(s)	169, 363
HaeIII	GGCC	2 cut(s)	117, 236
Hin1II	CATG	2 cut(s)	115, 310
HincII	GTYRAC	1 cut(s)	325
HindII	GTYRAC	1 cut(s)	325
HindIII	AAGCTT	1 cut(s)	148
HinfI	GANTC	1 cut(s)	343
HphI	GGTGA	2 cut(s)	185, 268
Hpy166II	GTNNAC	2 cut(s)	183, 325
Hpy188I	TCNGA	2 cut(s)	45, 90
Hpy188III	TCNNGA	1 cut(s)	130
Hpy8I	GTNNAC	2 cut(s)	183, 325
Hpy99I	CGWCG	2 cut(s)	260, 373
HpyCH4III	ACNGT	1 cut(s)	329
HpyCH4IV	ACGT	1 cut(s)	258
HpyF3I	CTNAG	1 cut(s)	87
HpySE526I	ACGT	1 cut(s)	258
Hsp92II	CATG	2 cut(s)	115, 310
Kzo9I	GATC	1 cut(s)	175
LguI	GCTCTTC	1 cut(s)	131
LpnPI	CCDG	1 cut(s)	143
MaeI	CTAG	1 cut(s)	384
MaeII	ACGT	1 cut(s)	258
MaeIII	GTNAC	3 cut(s)	21, 274, 314
MalI	GATC	1 cut(s)	177
MboI	GATC	1 cut(s)	175
MboII	GAAGA	3 cut(s)	118, 145, 286
MhlI	GDGCHC	2 cut(s)	9, 52
MlyI	GAGTC	1 cut(s)	352
MnlI	CCTC	4 cut(s)	68, 224, 265, 376
NdeII	GATC	1 cut(s)	175
NlaIII	CATG	2 cut(s)	115, 310
NlaIV	GGNNCC	1 cut(s)	79
NmeAIII	GCCGAG	2 cut(s)	231, 366
NmuCI	GTSAC	2 cut(s)	21, 274
NspV	TTCGAA	1 cut(s)	144
PciSI	GCTCTTC	1 cut(s)	131
PflMI	CCANNNNNTGG	1 cut(s)	38
PkrI	GCNGC	2 cut(s)	170, 364
PleI	GAGTC	1 cut(s)	351
PpsI	GAGTC	1 cut(s)	351
PspEI	GGTNACC	1 cut(s)	274
PspN4I	GGNNCC	1 cut(s)	79
PspPI	GGNCC	2 cut(s)	115, 234
SapI	GCTCTTC	1 cut(s)	131
SatI	GCNGC	2 cut(s)	169, 363
Sau3AI	GATC	1 cut(s)	175
Sau96I	GGNCC	2 cut(s)	115, 234
SchI	GAGTC	1 cut(s)	352
SduI	GDGCHC	2 cut(s)	9, 52
SetI	ASST	8 cut(s)	88, 95, 152, 188, 216, 261, 276, 394
SfuI	TTCGAA	1 cut(s)	144
SsiI	CCGC	5 cut(s)	168, 171, 333, 360, 363
SspMI	CTAG	1 cut(s)	384
TaaI	ACNGT	1 cut(s)	329
TaiI	ACGT	1 cut(s)	261
TaqI	TCGA	1 cut(s)	144
TauI	GCSGC	2 cut(s)	171, 365
TseFI	GTSAC	2 cut(s)	21, 274
Tsp45I	GTSAC	2 cut(s)	21, 274
TspDTI	ATGAA	2 cut(s)	100, 344
Van91I	CCANNNNNTGG	1 cut(s)	38
XmiI	GTMKAC	1 cut(s)	182
XspI	CTAG	1 cut(s)	384

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.