Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0003580

Physical Location & Seq

Genomic Coordinates Reverse (-)

88771194 .. 88776174

Gene Structure 4981 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG519400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1824 bp

ATGTCGGACTATCTTCACTCTCCGGCTGTAGAGCCGTTTAGTCAACAGCAGCGGCTCCAGGCGCTGATCGAGGGCGCCAGGGAGAACTGGACCTATGCCATCTTCTGGCAGTCGTCGTACGACATGTCGGGAGATTCCGTTCTCGGGTGGGGCGACGGGTTCTACAAGGACGAGAGTGATAAATGGAAAGCGAGGCCCAAAAAGATGACGTCATTAGTCGACCAGGAGCACTGGAAGAAAGTGCTCAGGGAACTCAACTCTTTGATTTCTGGGGCCGACACCACCGCCGACGACGAGGTCGTAGATCAAGTCACTGGTACAGAATGGTTCTTCCTTGTTTCCATGACCCATGGTTTCCTCAACGGCGGCGGGTTGCCGGGTCAGGCCTTTTTCTATTCCAACCCGGTCTGGGTCACCGGGCCGGACCGCCTAGCGGCGTCCTCCTGCGAGCGGGCCCGCCAAGCTCAGGTCTCCGGCCTACAGACTATGGTCTGCGTCCCGACGGCGAATGGGGTGGTCGAATTGGGCTCTACGGAGCTGATATTCCAGAGCTCGGATGTGATGAACGAGGCCCGATTATTGTTTGATTTCAATAATCTTGAAGTCGGTTCTTGGCCTGTAGCTCCGGCCACTTCAGGACCGAGTAGCAGTAACCATCACATCTCTAAGCCGATTCAGTTTGACAACCACCCTAGTTCCAGTAGCTCTTCTGCATCATCAGCTACTCAGTGGAAGTATGATGTGTTTTTGAGTTTCAGGGGTCCTGACACTCGAAGGAGTATTGTATCTGATTTATACGATCGGCTGCAAAACAAGAGAGGAATTAGAACATTTATGGATGATCCAGATCTTCGAGTAGGGGATGCTATTTCTCCCGCTCTCTTAAAGGCGATTGAAGAATCAAGGTTTGCAATCGTTGTTCTATCGAAAAATTATGCTCATTCTACTTGGTGTTTGGATGAACTTACAAGTATCTGTCAGTGCATGAAAGACTTCAACAGAATTCTTCCACTTTTCTATAATGTGGATCCCTCTGATGTAAGGTACCGGAAAAGGAGTTTCCGAAGAGCTTTCGATAAGCATGAACGCTCTGGGCGACACACATCAGAGAAGGTGCAGCGGTGGAATGATGCGTTAAACAAAGTGGCCAGTTTTTCTGGGTGGCATACAAAGAATTTTAAGAGTGATAGAGATCTTGTTGACTCCATTGTGGAATTTGTGTGCAGTAAAGTACAACCTATTGAAATCGGGTTTACAATGTTCGCCGGAGATTTTCAAGCATTTGAAGCAACAAGAAAAAGCATGAATGAGGTTATGAAGGCGCTTCAAGATCACGAGGTCACTGCCCTTGGGGTCTATGGAATGGGAGGGGTCGGCAAGACAACCATGGTTAAACGTGTCGGTGCGCTAGCCCGCAAGAATGGAATTTTTAACCATGTACTTCTGGCTGTCATATCCCAAAGCCCTGACGCGAGAAATATTCAAGCCACATTGGCAGAGCTGCTGGGCTTCAAATTCAAGTGGGAGACAGAAATTGGAAGAGCCGCTGAGTTGCATGAGAAGATAATGAGTAAAAATAAGATCCTTATAATCCTGGATGACATGTGGGAGAGAATGGATTTGTCAAGAATAGGAATTCCCAGCTATGACGAGCTTAAAAAATACAATTCTAAAGTCCTACTCACCACAAGGAGATTGCATGTTTGTAATTCCATGGACAGCCAAGCAAGCATTCCTCTCGATATCTTATCAGAAGAAGATTCTTGGAAATTGTTTATGAGAAATGCAGGAAGGCCTTTTGAATCCCCAATTTTAATAATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0008150 GO:0009987 GO:0016020 GO:0023052 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

LRR_8 NB-ARC TIR

Protein Analysis

607

Amino Acids

68.56

Weight (kDa)

6.42

Isoelectric Point (pI)

47.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
bHLH-MYC_N	PF14215	16 - 195	4.5e-52	bHLH-MYC and R2R3-MYB transcription factors N-terminal
TIR	PF01582	245 - 412	1.1e-47	TIR domain
TIR_2	PF13676	248 - 345	3.5e-17	TIR domain
NB-ARC	PF00931	433 - 596	1.4e-28	NB-ARC domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003580)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G32640
fragaria_vesca	FvH4_1g13600 FvH4_1g13601 FvH4_4g17280 FvH4_5g22100 FvH4_6g24370 FvH4_6g25910
prunus_persica	Prupe.5G035400_v2.0.a1
pyrus_communis	pycom06g02850 pycom16g24430
rosa_chinensis	RchiOBHm_Chr7g0209751
rosa_laevigata	RLG00000003096 RLG00000008856 RLG00000036489 RLG00000036838
rosa_multiflora	Rmu_sc0000161.1_g000024 Rmu_sc0002616.1_g000020
rosa_roxburghii	Rroxscaffold_1G00006980
rosa_rugosa	Rorug05G0432900 Rorug07G0116000
rosa_samantha	Rh4DG124100 Rh5AG516700 Rh5AG518900 Rh5AG519400 Rh5BG540600 Rh5CG563400 Rh5DG551100 Rh5DG551400 Rh5DG551800 Rh7AG249600 Rh7BG243500 Rh7CG265600 Rh7DG255400
rosa_wichuraiana	Rw0G022750 Rw7G021160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1589
AasI	GACNNNNNNGTC	1 cut(s)	296
AatII	GACGTC	1 cut(s)	212
Acc65I	GGTACC	1 cut(s)	1044
AccB1I	GGYRCC	2 cut(s)	74, 1044
AccB7I	CCANNNNNTGG	1 cut(s)	105
AccBSI	CCGCTC	2 cut(s)	451, 878
AccI	GTMKAC	1 cut(s)	219
AccII	CGCG	1 cut(s)	1472
AclWI	GGATC	4 cut(s)	836, 1022, 1035, 1576
AcoI	YGGCCR	2 cut(s)	627, 1146
AcsI	RAATTY	6 cut(s)	1002, 1174, 1214, 1425, 1514, 1635
AcuI	CTGAAG	1 cut(s)	618
AcyI	GRCGYC	3 cut(s)	75, 209, 437
AfaI	GTAC	5 cut(s)	119, 319, 1046, 1233, 1440
AfiI	CCNNNNNNNGG	7 cut(s)	105, 144, 409, 433, 450, 466, 553
AflIII	ACRYGT	3 cut(s)	123, 1396, 1602
AjnI	CCWGG	4 cut(s)	57, 77, 222, 1593
AjuI	GAANNNNNNNTTGG	2 cut(s)	1716, 1748
AloI	GAACNNNNNNTCC	2 cut(s)	123, 155
Alw21I	GWGCWC	3 cut(s)	231, 246, 554
Alw26I	GTCTC	2 cut(s)	475, 1520
AlwI	GGATC	4 cut(s)	836, 1022, 1035, 1576
AlwNI	CAGNNNCTG	1 cut(s)	64
Ama87I	CYCGRG	1 cut(s)	143
ApaI	GGGCCC	1 cut(s)	457
ApeKI	GCWGC	4 cut(s)	49, 805, 1117, 1501
ApoI	RAATTY	6 cut(s)	1002, 1174, 1214, 1425, 1514, 1635
Asp700I	GAANNNNTTC	1 cut(s)	992
Asp718I	GGTACC	1 cut(s)	1044
AspLEI	GCGC	4 cut(s)	64, 77, 1324, 1408
AsuC2I	CCSGG	3 cut(s)	378, 404, 418
AsuHPI	GGTGA	2 cut(s)	406, 1675
AsuNHI	GCTAGC	1 cut(s)	1408
AvaI	CYCGRG	1 cut(s)	143
AvaII	GGWCC	4 cut(s)	90, 424, 638, 761
BaeGI	GKGCMC	1 cut(s)	457
BalI	TGGCCA	1 cut(s)	1148
BamHI	GGATCC	1 cut(s)	1027
BanI	GGYRCC	2 cut(s)	74, 1044
BanII	GRGCYC	3 cut(s)	457, 530, 554
BauI	CACGAG	1 cut(s)	1334
Bbv12I	GWGCWC	3 cut(s)	231, 246, 554
BbvI	GCAGC	4 cut(s)	61, 792, 1129, 1488
BccI	CCATC	2 cut(s)	107, 663
BceAI	ACGGC	3 cut(s)	19, 379, 519
BcgI	CGANNNNNNTGC	4 cut(s)	1325, 1359, 1720, 1754
BciT130I	CCWGG	4 cut(s)	59, 79, 224, 1595
BcnI	CCSGG	3 cut(s)	378, 404, 418
BcoDI	GTCTC	2 cut(s)	475, 1520
BfaI	CTAG	3 cut(s)	431, 693, 1409
BfmI	CTRYAG	3 cut(s)	27, 479, 618
BfoI	RGCGCY	3 cut(s)	65, 78, 1325
BglI	GCCNNNNNGGC	1 cut(s)	1493
BglII	AGATCT	2 cut(s)	847, 1192
BisI	GCNGC	8 cut(s)	50, 53, 367, 435, 806, 1118, 1502, 1545
BlsI	GCNGC	8 cut(s)	51, 54, 368, 436, 807, 1119, 1503, 1546
Bme1390I	CCNGG	7 cut(s)	59, 79, 224, 378, 404, 418, 1595
Bme18I	GGWCC	4 cut(s)	90, 424, 638, 761
BmeT110I	CYCGRG	1 cut(s)	143
BmiI	GGNNCC	7 cut(s)	56, 76, 274, 455, 762, 1029, 1046
BmrFI	CCNGG	7 cut(s)	59, 79, 224, 378, 404, 418, 1595
BmsI	GCATC	3 cut(s)	722, 853, 1120
BmtI	GCTAGC	1 cut(s)	1412
BoxI	GACNNNNGTC	1 cut(s)	488
BpmI	CTGGAG	1 cut(s)	41
Bpu10I	CCTNAGC	2 cut(s)	245, 465
BpuMI	CCSGG	3 cut(s)	378, 404, 418
BsaBI	GATNNNNATC	2 cut(s)	846, 1191
BsaHI	GRCGYC	3 cut(s)	75, 209, 437
BsaI	GGTCTC	1 cut(s)	475
BsaJI	CCNNGG	5 cut(s)	78, 349, 1348, 1386, 1713
BsaWI	WCCGGW	1 cut(s)	1047
BsaXI	ACNNNNNCTCC	2 cut(s)	123, 153
Bsc4I	CCNNNNNNNGG	7 cut(s)	105, 144, 409, 433, 450, 466, 553
Bse1I	ACTGG	5 cut(s)	92, 236, 319, 699, 1149
Bse8I	GATNNNNATC	2 cut(s)	846, 1191
BseBI	CCWGG	4 cut(s)	59, 79, 224, 1595
BseDI	CCNNGG	5 cut(s)	78, 349, 1348, 1386, 1713
BseGI	GGATG	5 cut(s)	562, 844, 868, 964, 1603
BseJI	GATNNNNATC	2 cut(s)	846, 1191
BseLI	CCNNNNNNNGG	7 cut(s)	105, 144, 409, 433, 450, 466, 553
BseMII	CTCAG	4 cut(s)	259, 479, 740, 1539
BseNI	ACTGG	5 cut(s)	92, 236, 319, 699, 1149
BseSI	GKGCMC	1 cut(s)	457
BseXI	GCAGC	4 cut(s)	61, 792, 1129, 1488
BseYI	CCCAGC	2 cut(s)	1504, 1640
BsgI	GTGCAG	2 cut(s)	1136, 1243
Bsh1236I	CGCG	1 cut(s)	1472
Bsh1285I	CGRYCG	1 cut(s)	802
BshNI	GGYRCC	2 cut(s)	74, 1044
BsiEI	CGRYCG	1 cut(s)	802
BsiHKAI	GWGCWC	3 cut(s)	231, 246, 554
BsiHKCI	CYCGRG	1 cut(s)	143
BsiSI	CCGG	9 cut(s)	23, 377, 404, 417, 422, 474, 626, 1048, 1266
BsiWI	CGTACG	1 cut(s)	117
BslFI	GGGAC	1 cut(s)	482
BslI	CCNNNNNNNGG	7 cut(s)	105, 144, 409, 433, 450, 466, 553
BsmAI	GTCTC	2 cut(s)	475, 1520
BsmFI	GGGAC	1 cut(s)	482
BsmI	GAATGC	1 cut(s)	1731
Bso31I	GGTCTC	1 cut(s)	475
BsoBI	CYCGRG	1 cut(s)	143
Bsp120I	GGGCCC	1 cut(s)	453
Bsp1286I	GDGCHC	5 cut(s)	231, 246, 457, 530, 554
Bsp143I	GATC	9 cut(s)	66, 304, 799, 841, 847, 1027, 1192, 1330, 1581
Bsp19I	CCATGG	3 cut(s)	349, 1386, 1713
BspCNI	CTCAG	4 cut(s)	258, 478, 739, 1540
BspFNI	CGCG	1 cut(s)	1472
BspLI	GGNNCC	7 cut(s)	56, 76, 274, 455, 762, 1029, 1046
BspOI	GCTAGC	1 cut(s)	1412
BspPI	GGATC	4 cut(s)	836, 1022, 1035, 1576
BspQI	GCTCTTC	3 cut(s)	712, 1060, 1534
BspT107I	GGYRCC	2 cut(s)	74, 1044
BspTNI	GGTCTC	1 cut(s)	475
BsrBI	CCGCTC	2 cut(s)	451, 878
BsrI	ACTGG	5 cut(s)	92, 236, 319, 699, 1149
BssECI	CCNNGG	5 cut(s)	78, 349, 1348, 1386, 1713
BssMI	GATC	9 cut(s)	66, 304, 799, 841, 847, 1027, 1192, 1330, 1581
BssNI	GRCGYC	3 cut(s)	75, 209, 437
BssSI	CACGAG	1 cut(s)	1334
BssT1I	CCWWGG	4 cut(s)	349, 1348, 1386, 1713
Bst2BI	CACGAG	1 cut(s)	1334
Bst2UI	CCWGG	4 cut(s)	59, 79, 224, 1595
Bst6I	CTCTTC	3 cut(s)	712, 1060, 1534
BstACI	GRCGYC	3 cut(s)	75, 209, 437
BstC8I	GCNNGC	6 cut(s)	449, 453, 457, 1410, 1414, 1729
BstDEI	CTNAG	5 cut(s)	245, 465, 666, 726, 1548
BstDSI	CCRYGG	3 cut(s)	349, 1386, 1713
BstEII	GGTNACC	1 cut(s)	412
BstF5I	GGATG	5 cut(s)	562, 844, 868, 964, 1603
BstFNI	CGCG	1 cut(s)	1472
BstH2I	RGCGCY	3 cut(s)	65, 78, 1325
BstHHI	GCGC	4 cut(s)	64, 77, 1324, 1408
BstKTI	GATC	9 cut(s)	69, 307, 802, 844, 850, 1030, 1195, 1333, 1584
BstMAI	GTCTC	2 cut(s)	475, 1520
BstMBI	GATC	9 cut(s)	66, 304, 799, 841, 847, 1027, 1192, 1330, 1581
BstMCI	CGRYCG	1 cut(s)	802
BstMWI	GCNNNNNNNGC	6 cut(s)	61, 461, 719, 1286, 1493, 1728
BstNI	CCWGG	4 cut(s)	59, 79, 224, 1595
BstNSI	RCATGY	3 cut(s)	127, 1606, 1703
BstPAI	GACNNNNGTC	1 cut(s)	488
BstPI	GGTNACC	1 cut(s)	412
BstSCI	CCNGG	7 cut(s)	57, 77, 222, 376, 402, 416, 1593
BstSFI	CTRYAG	3 cut(s)	27, 479, 618
BstSLI	GKGCMC	1 cut(s)	457
BstUI	CGCG	1 cut(s)	1472
BstV1I	GCAGC	4 cut(s)	61, 792, 1129, 1488
BstX2I	RGATCY	4 cut(s)	847, 1027, 1192, 1581
BstYI	RGATCY	4 cut(s)	847, 1027, 1192, 1581
BtgI	CCRYGG	3 cut(s)	349, 1386, 1713
BtsCI	GGATG	5 cut(s)	562, 844, 868, 964, 1603
BtsI	GCAGTG	1 cut(s)	1341
BtsIMutI	CAGTG	5 cut(s)	229, 312, 734, 986, 1341
Cac8I	GCNNGC	6 cut(s)	449, 453, 457, 1410, 1414, 1729
CaiI	CAGNNNCTG	1 cut(s)	64
CfoI	GCGC	4 cut(s)	64, 77, 1324, 1408
CpoI	CGGWCCG	1 cut(s)	424
CseI	GACGC	3 cut(s)	426, 484, 1478
Csp6I	GTAC	5 cut(s)	118, 318, 1045, 1232, 1439
CspI	CGGWCCG	1 cut(s)	424
CviQI	GTAC	5 cut(s)	118, 318, 1045, 1232, 1439
DdeI	CTNAG	5 cut(s)	245, 465, 666, 726, 1548
DinI	GGCGCC	1 cut(s)	76
DpnI	GATC	9 cut(s)	68, 306, 801, 843, 849, 1029, 1194, 1332, 1583
DpnII	GATC	9 cut(s)	66, 304, 799, 841, 847, 1027, 1192, 1330, 1581
DrdI	GACNNNNNNGTC	1 cut(s)	296
DseDI	GACNNNNNNGTC	1 cut(s)	296
EaeI	YGGCCR	2 cut(s)	627, 1146
Eam1104I	CTCTTC	3 cut(s)	712, 1060, 1534
EarI	CTCTTC	3 cut(s)	712, 1060, 1534
Ecl136II	GAGCTC	1 cut(s)	552
Eco130I	CCWWGG	4 cut(s)	349, 1348, 1386, 1713
Eco147I	AGGCCT	2 cut(s)	386, 1795
Eco24I	GRGCYC	3 cut(s)	457, 530, 554
Eco31I	GGTCTC	1 cut(s)	475
Eco32I	GATATC	1 cut(s)	1744
Eco47I	GGWCC	4 cut(s)	90, 424, 638, 761
Eco53kI	GAGCTC	1 cut(s)	552
Eco57I	CTGAAG	1 cut(s)	618
Eco88I	CYCGRG	1 cut(s)	143
Eco91I	GGTNACC	1 cut(s)	412
EcoICRI	GAGCTC	1 cut(s)	552
EcoO109I	RGGNCCY	1 cut(s)	761
EcoO65I	GGTNACC	1 cut(s)	412
EcoRI	GAATTC	2 cut(s)	1002, 1635
EcoRII	CCWGG	4 cut(s)	57, 77, 222, 1593
EcoRV	GATATC	1 cut(s)	1744
EcoT14I	CCWWGG	4 cut(s)	349, 1348, 1386, 1713
EcoT38I	GRGCYC	3 cut(s)	457, 530, 554
EgeI	GGCGCC	1 cut(s)	76
EheI	GGCGCC	1 cut(s)	76
ErhI	CCWWGG	4 cut(s)	349, 1348, 1386, 1713
FaqI	GGGAC	1 cut(s)	482
FauI	CCCGC	5 cut(s)	362, 444, 464, 883, 1421
FblI	GTMKAC	1 cut(s)	219
Fnu4HI	GCNGC	8 cut(s)	50, 53, 367, 435, 806, 1118, 1502, 1545
FokI	GGATG	5 cut(s)	569, 851, 875, 971, 1610
FriOI	GRGCYC	3 cut(s)	457, 530, 554
Fsp4HI	GCNGC	8 cut(s)	50, 53, 367, 435, 806, 1118, 1502, 1545
FspBI	CTAG	3 cut(s)	431, 693, 1409
GlaI	GCGC	4 cut(s)	63, 76, 1323, 1407
GluI	GCNGC	8 cut(s)	50, 53, 367, 435, 806, 1118, 1502, 1545
GsaI	CCCAGC	2 cut(s)	1508, 1644
GsuI	CTGGAG	1 cut(s)	41
HaeII	RGCGCY	3 cut(s)	65, 78, 1325
HapII	CCGG	9 cut(s)	23, 377, 404, 417, 422, 474, 626, 1048, 1266
HgaI	GACGC	3 cut(s)	426, 484, 1478
HhaI	GCGC	4 cut(s)	64, 77, 1324, 1408
Hin1I	GRCGYC	3 cut(s)	75, 209, 437
Hin6I	GCGC	4 cut(s)	62, 75, 1322, 1406
HinP1I	GCGC	4 cut(s)	62, 75, 1322, 1406
HincII	GTYRAC	3 cut(s)	44, 220, 1201
HindII	GTYRAC	3 cut(s)	44, 220, 1201
HinfI	GANTC	6 cut(s)	134, 673, 899, 1202, 1760, 1802
HpaII	CCGG	9 cut(s)	23, 377, 404, 417, 422, 474, 626, 1048, 1266
HphI	GGTGA	2 cut(s)	406, 1675
Hpy166II	GTNNAC	4 cut(s)	44, 220, 1201, 1254
Hpy188I	TCNGA	7 cut(s)	7, 556, 790, 1036, 1064, 1108, 1753
Hpy8I	GTNNAC	4 cut(s)	44, 220, 1201, 1254
Hpy99I	CGWCG	5 cut(s)	118, 158, 293, 296, 505
HpyAV	CCTTC	4 cut(s)	768, 1105, 1312, 1785
HpyCH4IV	ACGT	2 cut(s)	209, 1396
HpyCH4V	TGCA	9 cut(s)	713, 808, 911, 984, 1117, 1224, 1555, 1699, 1787
HpyF10VI	GCNNNNNNNGC	6 cut(s)	61, 461, 719, 1286, 1493, 1728
HpyF3I	CTNAG	5 cut(s)	245, 465, 666, 726, 1548
HpySE526I	ACGT	2 cut(s)	209, 1396
Hsp92I	GRCGYC	3 cut(s)	75, 209, 437
HspAI	GCGC	4 cut(s)	62, 75, 1322, 1406
KasI	GGCGCC	1 cut(s)	74
KpnI	GGTACC	1 cut(s)	1048
Kzo9I	GATC	9 cut(s)	66, 304, 799, 841, 847, 1027, 1192, 1330, 1581
LguI	GCTCTTC	3 cut(s)	712, 1060, 1534
LmnI	GCTCC	4 cut(s)	60, 226, 535, 628
Lsp1109I	GCAGC	4 cut(s)	61, 792, 1129, 1488
LweI	GCATC	3 cut(s)	722, 853, 1120
MaeI	CTAG	3 cut(s)	431, 693, 1409
MaeII	ACGT	2 cut(s)	209, 1396
MaeIII	GTNAC	4 cut(s)	310, 412, 650, 1339
MalI	GATC	9 cut(s)	68, 306, 801, 843, 849, 1029, 1194, 1332, 1583
MbiI	CCGCTC	2 cut(s)	451, 878
MboI	GATC	9 cut(s)	66, 304, 799, 841, 847, 1027, 1192, 1330, 1581
MflI	RGATCY	4 cut(s)	847, 1027, 1192, 1581
MhlI	GDGCHC	5 cut(s)	231, 246, 457, 530, 554
MlsI	TGGCCA	1 cut(s)	1148
MluNI	TGGCCA	1 cut(s)	1148
Mly113I	GGCGCC	1 cut(s)	75
MlyI	GAGTC	1 cut(s)	1196
MmeI	TCCRAC	1 cut(s)	423
Mox20I	TGGCCA	1 cut(s)	1148
MroXI	GAANNNNTTC	1 cut(s)	992
MscI	TGGCCA	1 cut(s)	1148
MseI	TTAA	7 cut(s)	884, 1136, 1179, 1392, 1431, 1656, 1814
Msp20I	TGGCCA	1 cut(s)	1148
MspA1I	CMGCKG	3 cut(s)	52, 1120, 1547
MspI	CCGG	9 cut(s)	23, 377, 404, 417, 422, 474, 626, 1048, 1266
MspR9I	CCNGG	7 cut(s)	59, 79, 224, 378, 404, 418, 1595
Mva1269I	GAATGC	1 cut(s)	1731
MvaI	CCWGG	4 cut(s)	59, 79, 224, 1595
MvnI	CGCG	1 cut(s)	1472
MwoI	GCNNNNNNNGC	6 cut(s)	61, 461, 719, 1286, 1493, 1728
NarI	GGCGCC	1 cut(s)	75
NciI	CCSGG	3 cut(s)	378, 404, 418
NcoI	CCATGG	3 cut(s)	349, 1386, 1713
NdeII	GATC	9 cut(s)	66, 304, 799, 841, 847, 1027, 1192, 1330, 1581
NheI	GCTAGC	1 cut(s)	1408
NlaIV	GGNNCC	7 cut(s)	56, 76, 274, 455, 762, 1029, 1046
NmuCI	GTSAC	3 cut(s)	310, 412, 1339
NspI	RCATGY	3 cut(s)	127, 1606, 1703
PceI	AGGCCT	2 cut(s)	386, 1795
PciI	ACATGT	2 cut(s)	123, 1602
PciSI	GCTCTTC	3 cut(s)	712, 1060, 1534
PcsI	WCGNNNNNNNCGW	3 cut(s)	150, 297, 1093
PctI	GAATGC	1 cut(s)	1731
PdmI	GAANNNNTTC	1 cut(s)	992
PfeI	GAWTC	5 cut(s)	134, 673, 899, 1760, 1802
Pfl23II	CGTACG	1 cut(s)	117
PflFI	GACNNNGTC	1 cut(s)	296
PflMI	CCANNNNNTGG	1 cut(s)	105
PfoI	TCCNGGA	1 cut(s)	1593
PkrI	GCNGC	8 cut(s)	51, 54, 368, 436, 807, 1119, 1503, 1546
Ple19I	CGATCG	1 cut(s)	802
PleI	GAGTC	1 cut(s)	1196
PluTI	GGCGCC	1 cut(s)	78
PpsI	GAGTC	1 cut(s)	1196
PpuMI	RGGWCCY	1 cut(s)	761
PscI	ACATGT	2 cut(s)	123, 1602
PshAI	GACNNNNGTC	1 cut(s)	488
PsiI	TTATAA	1 cut(s)	1589
Psp124BI	GAGCTC	1 cut(s)	554
Psp5II	RGGWCCY	1 cut(s)	761
Psp6I	CCWGG	4 cut(s)	57, 77, 222, 1593
PspEI	GGTNACC	1 cut(s)	412
PspFI	CCCAGC	2 cut(s)	1504, 1640
PspGI	CCWGG	4 cut(s)	57, 77, 222, 1593
PspLI	CGTACG	1 cut(s)	117
PspN4I	GGNNCC	7 cut(s)	56, 76, 274, 455, 762, 1029, 1046
PspOMI	GGGCCC	1 cut(s)	453
PspPPI	RGGWCCY	1 cut(s)	761
PstNI	CAGNNNCTG	1 cut(s)	64
PsuI	RGATCY	4 cut(s)	847, 1027, 1192, 1581
PsyI	GACNNNGTC	1 cut(s)	296
PvuI	CGATCG	1 cut(s)	802
RsaI	GTAC	5 cut(s)	119, 319, 1046, 1233, 1440
RsaNI	GTAC	5 cut(s)	118, 318, 1045, 1232, 1439
Rsr2I	CGGWCCG	1 cut(s)	424
RsrII	CGGWCCG	1 cut(s)	424
SacI	GAGCTC	1 cut(s)	554
SalI	GTCGAC	1 cut(s)	218
SapI	GCTCTTC	3 cut(s)	712, 1060, 1534
SaqAI	TTAA	7 cut(s)	884, 1136, 1179, 1392, 1431, 1656, 1814
SatI	GCNGC	8 cut(s)	50, 53, 367, 435, 806, 1118, 1502, 1545
Sau3AI	GATC	9 cut(s)	66, 304, 799, 841, 847, 1027, 1192, 1330, 1581
SchI	GAGTC	1 cut(s)	1196
ScrFI	CCNGG	7 cut(s)	59, 79, 224, 378, 404, 418, 1595
SduI	GDGCHC	5 cut(s)	231, 246, 457, 530, 554
SfaNI	GCATC	3 cut(s)	722, 853, 1120
SfcI	CTRYAG	3 cut(s)	27, 479, 618
SfoI	GGCGCC	1 cut(s)	76
SinI	GGWCC	4 cut(s)	90, 424, 638, 761
SseBI	AGGCCT	2 cut(s)	386, 1795
SspDI	GGCGCC	1 cut(s)	74
SspI	AATATT	1 cut(s)	1480
SspMI	CTAG	3 cut(s)	431, 693, 1409
SstI	GAGCTC	1 cut(s)	554
StuI	AGGCCT	2 cut(s)	386, 1795
StyD4I	CCNGG	7 cut(s)	57, 77, 222, 376, 402, 416, 1593
StyI	CCWWGG	4 cut(s)	349, 1348, 1386, 1713
TaiI	ACGT	2 cut(s)	212, 1399
TaqI	TCGA	8 cut(s)	69, 219, 519, 772, 853, 926, 1074, 1740
TaqII	GACCGA	1 cut(s)	655
TatI	WGTACW	2 cut(s)	1231, 1438
TauI	GCSGC	4 cut(s)	55, 369, 437, 1547
TfiI	GAWTC	5 cut(s)	134, 673, 899, 1760, 1802
Tru1I	TTAA	7 cut(s)	884, 1136, 1179, 1392, 1431, 1656, 1814
Tru9I	TTAA	7 cut(s)	884, 1136, 1179, 1392, 1431, 1656, 1814
TscAI	CASTG	5 cut(s)	236, 319, 734, 986, 1348
TseFI	GTSAC	3 cut(s)	310, 412, 1339
TseI	GCWGC	4 cut(s)	49, 805, 1117, 1501
Tsp45I	GTSAC	3 cut(s)	310, 412, 1339
TspDTI	ATGAA	6 cut(s)	578, 975, 1001, 1098, 1319, 1331
TspGWI	ACGGA	2 cut(s)	127, 548
TspRI	CASTG	5 cut(s)	236, 319, 734, 986, 1348
Tth111I	GACNNNGTC	1 cut(s)	296
Van91I	CCANNNNNTGG	1 cut(s)	105
VpaK11BI	GGWCC	4 cut(s)	90, 424, 638, 761
XapI	RAATTY	6 cut(s)	1002, 1174, 1214, 1425, 1514, 1635
XceI	RCATGY	3 cut(s)	127, 1606, 1703
XmiI	GTMKAC	1 cut(s)	219
XmnI	GAANNNNTTC	1 cut(s)	992
XspI	CTAG	3 cut(s)	431, 693, 1409
ZraI	GACGTC	1 cut(s)	210

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.