Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0003580

Physical Location & Seq

Genomic Coordinates Forward (+)

20054589 .. 20056068

Gene Structure 1480 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG124100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 477 bp

ATGGTCTACATCCCGAAGGCGAATGGGGTCTTCGAATTGGGCTCAACGGAGCTCATATTCCAGAGCTTGGATCTGATGAACAAGGTCCAAGTATTGTTTAATTTTAATAACCTTGAAGTCCGTTCTTGGCCTATGGGTGGCGGCACCAATCAAGGCGAGAACGACCCATCATCGATGTGGATCAATGACAACTTGGCCAGCACAATTGAAGTTGTCAAGGAGTCAGTGAACATGGGTTCGGCAACTTCAGGACTCAGATCTCGAAGCCGATTCAATTCGATAACCACCCTGGTTCCAGTAGCTTATCGGAGAATCCGAGCGCCGTTCTCCAAGTACAATCTCAGAGCAATCACCACCACCAAGCCCAATAGCAGCAATAGCATCAATGATGGAAAGATGGTGGACTGTGACTCCATGAGTCTGTCGGAGACAGTGAAAGATAGGGAGGATCTCTCTCAAGCTTATGTGGCTTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005509 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006952 GO:0006970 GO:0006972 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009628 GO:0009651 GO:0009718 GO:0009719 GO:0009725 GO:0009753 GO:0009812 GO:0009813 GO:0009889 GO:0009891 GO:0009893 GO:0010033 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0042221 GO:0042440 GO:0042538 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043425 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0046148 GO:0046283 GO:0046872 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901576 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04016 ko04075 map04016 map04075

Pfam Domains

Protein Families

HLH bHLH-MYC_N

Protein Analysis

158

Amino Acids

17.51

Weight (kDa)

6.28

Isoelectric Point (pI)

46.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003580)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G32640
fragaria_vesca	FvH4_1g13600 FvH4_1g13601 FvH4_4g17280 FvH4_5g22100 FvH4_6g24370 FvH4_6g25910
prunus_persica	Prupe.5G035400_v2.0.a1
pyrus_communis	pycom06g02850 pycom16g24430
rosa_chinensis	RchiOBHm_Chr7g0209751
rosa_laevigata	RLG00000003096 RLG00000008856 RLG00000036489 RLG00000036838
rosa_multiflora	Rmu_sc0000161.1_g000024 Rmu_sc0002616.1_g000020
rosa_roxburghii	Rroxscaffold_1G00006980
rosa_rugosa	Rorug05G0432900 Rorug07G0116000
rosa_samantha	Rh4DG124100 Rh5AG516700 Rh5AG518900 Rh5AG519400 Rh5BG540600 Rh5CG563400 Rh5DG551100 Rh5DG551400 Rh5DG551800 Rh7AG249600 Rh7BG243500 Rh7CG265600 Rh7DG255400
rosa_wichuraiana	Rw0G022750 Rw7G021160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	143
AccB7I	CCANNNNNTGG	1 cut(s)	67
AccI	GTMKAC	1 cut(s)	6
AciI	CCGC	1 cut(s)	141
AclWI	GGATC	3 cut(s)	78, 188, 456
AcoI	YGGCCR	1 cut(s)	195
AcuI	CTGAAG	1 cut(s)	231
AfaI	GTAC	1 cut(s)	335
AfiI	CCNNNNNNNGG	2 cut(s)	67, 137
AgsI	TTSAA	3 cut(s)	116, 209, 274
AjnI	CCWGG	1 cut(s)	288
AluBI	AGCT	4 cut(s)	52, 66, 302, 461
AluI	AGCT	4 cut(s)	52, 66, 302, 461
Alw21I	GWGCWC	1 cut(s)	54
Alw26I	GTCTC	1 cut(s)	422
AlwI	GGATC	3 cut(s)	78, 188, 456
AoxI	GGCC	2 cut(s)	128, 195
ApeKI	GCWGC	1 cut(s)	372
AspLEI	GCGC	1 cut(s)	322
AspS9I	GGNCC	1 cut(s)	85
AsuHPI	GGTGA	1 cut(s)	343
AsuII	TTCGAA	1 cut(s)	33
AvaII	GGWCC	1 cut(s)	85
BalI	TGGCCA	1 cut(s)	197
BanI	GGYRCC	1 cut(s)	143
BanII	GRGCYC	2 cut(s)	44, 54
BbsI	GAAGAC	1 cut(s)	22
Bbv12I	GWGCWC	1 cut(s)	54
BbvI	GCAGC	1 cut(s)	384
BccI	CCATC	3 cut(s)	175, 383, 391
BceAI	ACGGC	1 cut(s)	307
BciT130I	CCWGG	1 cut(s)	290
BcoDI	GTCTC	1 cut(s)	422
BfoI	RGCGCY	1 cut(s)	323
BglII	AGATCT	1 cut(s)	257
BisI	GCNGC	2 cut(s)	142, 373
BlsI	GCNGC	2 cut(s)	143, 374
Bme1390I	CCNGG	1 cut(s)	290
Bme18I	GGWCC	1 cut(s)	85
BmgT120I	GGNCC	1 cut(s)	85
BmiI	GGNNCC	2 cut(s)	145, 294
BmrFI	CCNGG	1 cut(s)	290
BmsI	GCATC	1 cut(s)	390
BpiI	GAAGAC	1 cut(s)	22
BplI	GAGNNNNNCTC	2 cut(s)	437, 469
Bpu14I	TTCGAA	1 cut(s)	33
BpuEI	CTTGAG	1 cut(s)	441
Bsa29I	ATCGAT	1 cut(s)	173
BsaBI	GATNNNNATC	1 cut(s)	179
BsaJI	CCNNGG	1 cut(s)	288
BsaXI	ACNNNNNCTCC	2 cut(s)	395, 425
Bsc4I	CCNNNNNNNGG	2 cut(s)	67, 137
Bse1I	ACTGG	1 cut(s)	296
Bse8I	GATNNNNATC	1 cut(s)	179
BseBI	CCWGG	1 cut(s)	290
BseCI	ATCGAT	1 cut(s)	173
BseDI	CCNNGG	1 cut(s)	288
BseGI	GGATG	1 cut(s)	9
BseJI	GATNNNNATC	1 cut(s)	179
BseLI	CCNNNNNNNGG	2 cut(s)	67, 137
BseMII	CTCAG	2 cut(s)	268, 355
BseNI	ACTGG	1 cut(s)	296
BseXI	GCAGC	1 cut(s)	384
BshFI	GGCC	2 cut(s)	130, 197
BshNI	GGYRCC	1 cut(s)	143
BshVI	ATCGAT	1 cut(s)	173
BsiHKAI	GWGCWC	1 cut(s)	54
BslI	CCNNNNNNNGG	2 cut(s)	67, 137
BsmAI	GTCTC	1 cut(s)	422
BsnI	GGCC	2 cut(s)	130, 197
Bsp119I	TTCGAA	1 cut(s)	33
Bsp1286I	GDGCHC	2 cut(s)	44, 54
Bsp143I	GATC	4 cut(s)	70, 180, 257, 448
BspACI	CCGC	1 cut(s)	141
BspANI	GGCC	2 cut(s)	130, 197
BspCNI	CTCAG	2 cut(s)	267, 354
BspDI	ATCGAT	1 cut(s)	173
BspLI	GGNNCC	2 cut(s)	145, 294
BspPI	GGATC	3 cut(s)	78, 188, 456
BspT104I	TTCGAA	1 cut(s)	33
BspT107I	GGYRCC	1 cut(s)	143
BsrI	ACTGG	1 cut(s)	296
BssECI	CCNNGG	1 cut(s)	288
BssMI	GATC	4 cut(s)	70, 180, 257, 448
Bst2UI	CCWGG	1 cut(s)	290
Bst4CI	ACNGT	2 cut(s)	407, 433
BstBI	TTCGAA	1 cut(s)	33
BstC8I	GCNNGC	1 cut(s)	199
BstDEI	CTNAG	2 cut(s)	254, 341
BstF5I	GGATG	1 cut(s)	9
BstH2I	RGCGCY	1 cut(s)	323
BstHHI	GCGC	1 cut(s)	322
BstKTI	GATC	4 cut(s)	73, 183, 260, 451
BstMAI	GTCTC	1 cut(s)	422
BstMBI	GATC	4 cut(s)	70, 180, 257, 448
BstMWI	GCNNNNNNNGC	2 cut(s)	378, 467
BstNI	CCWGG	1 cut(s)	290
BstSCI	CCNGG	1 cut(s)	288
BstV1I	GCAGC	1 cut(s)	384
BstV2I	GAAGAC	1 cut(s)	22
BstX2I	RGATCY	3 cut(s)	70, 257, 448
BstYI	RGATCY	3 cut(s)	70, 257, 448
Bsu15I	ATCGAT	1 cut(s)	173
BsuRI	GGCC	2 cut(s)	130, 197
BsuTUI	ATCGAT	1 cut(s)	173
BtsCI	GGATG	1 cut(s)	9
BtsIMutI	CAGTG	2 cut(s)	231, 438
Cac8I	GCNNGC	1 cut(s)	199
CfoI	GCGC	1 cut(s)	322
Cfr13I	GGNCC	1 cut(s)	85
ClaI	ATCGAT	1 cut(s)	173
Csp6I	GTAC	1 cut(s)	334
CviAII	CATG	2 cut(s)	232, 415
CviQI	GTAC	1 cut(s)	334
DdeI	CTNAG	2 cut(s)	254, 341
DpnI	GATC	4 cut(s)	72, 182, 259, 450
DpnII	GATC	4 cut(s)	70, 180, 257, 448
EaeI	YGGCCR	1 cut(s)	195
Ecl136II	GAGCTC	1 cut(s)	52
Eco24I	GRGCYC	2 cut(s)	44, 54
Eco47I	GGWCC	1 cut(s)	85
Eco53kI	GAGCTC	1 cut(s)	52
Eco57I	CTGAAG	1 cut(s)	231
EcoICRI	GAGCTC	1 cut(s)	52
EcoRII	CCWGG	1 cut(s)	288
EcoT38I	GRGCYC	2 cut(s)	44, 54
FaeI	CATG	2 cut(s)	235, 418
FaiI	YATR	5 cut(s)	56, 134, 233, 416, 465
FatI	CATG	2 cut(s)	231, 414
FblI	GTMKAC	1 cut(s)	6
Fnu4HI	GCNGC	2 cut(s)	142, 373
FriOI	GRGCYC	2 cut(s)	44, 54
Fsp4HI	GCNGC	2 cut(s)	142, 373
GlaI	GCGC	1 cut(s)	321
GluI	GCNGC	2 cut(s)	142, 373
HaeII	RGCGCY	1 cut(s)	323
HaeIII	GGCC	2 cut(s)	130, 197
HhaI	GCGC	1 cut(s)	322
Hin1II	CATG	2 cut(s)	235, 418
Hin6I	GCGC	1 cut(s)	320
HinP1I	GCGC	1 cut(s)	320
HindIII	AAGCTT	1 cut(s)	459
HinfI	GANTC	6 cut(s)	221, 252, 270, 312, 410, 418
HphI	GGTGA	1 cut(s)	343
Hpy166II	GTNNAC	3 cut(s)	7, 229, 403
Hpy188I	TCNGA	6 cut(s)	75, 257, 309, 317, 344, 427
Hpy188III	TCNNGA	4 cut(s)	13, 61, 249, 261
Hpy8I	GTNNAC	3 cut(s)	7, 229, 403
HpyAV	CCTTC	1 cut(s)	10
HpyCH4III	ACNGT	2 cut(s)	407, 433
HpyF10VI	GCNNNNNNNGC	2 cut(s)	378, 467
HpyF3I	CTNAG	2 cut(s)	254, 341
Hsp92II	CATG	2 cut(s)	235, 418
HspAI	GCGC	1 cut(s)	320
Kzo9I	GATC	4 cut(s)	70, 180, 257, 448
LmnI	GCTCC	1 cut(s)	49
LpnPI	CCDG	6 cut(s)	74, 211, 234, 275, 302, 309
Lsp1109I	GCAGC	1 cut(s)	384
LweI	GCATC	1 cut(s)	390
MaeIII	GTNAC	1 cut(s)	407
MalI	GATC	4 cut(s)	72, 182, 259, 450
MboI	GATC	4 cut(s)	70, 180, 257, 448
MboII	GAAGA	1 cut(s)	22
MfeI	CAATTG	1 cut(s)	204
MflI	RGATCY	3 cut(s)	70, 257, 448
MhlI	GDGCHC	2 cut(s)	44, 54
MlsI	TGGCCA	1 cut(s)	197
MluCI	AATT	4 cut(s)	35, 100, 204, 274
MluNI	TGGCCA	1 cut(s)	197
MlyI	GAGTC	4 cut(s)	230, 246, 404, 427
MmeI	TCCRAC	1 cut(s)	405
MnlI	CCTC	1 cut(s)	439
Mox20I	TGGCCA	1 cut(s)	197
MscI	TGGCCA	1 cut(s)	197
MseI	TTAA	2 cut(s)	99, 105
MslI	CAYNNNNRTG	1 cut(s)	175
Msp20I	TGGCCA	1 cut(s)	197
MspR9I	CCNGG	1 cut(s)	290
MunI	CAATTG	1 cut(s)	204
MvaI	CCWGG	1 cut(s)	290
MwoI	GCNNNNNNNGC	2 cut(s)	378, 467
NdeII	GATC	4 cut(s)	70, 180, 257, 448
NlaIII	CATG	2 cut(s)	235, 418
NlaIV	GGNNCC	2 cut(s)	145, 294
NmuCI	GTSAC	1 cut(s)	407
NspV	TTCGAA	1 cut(s)	33
PcsI	WCGNNNNNNNCGW	1 cut(s)	313
PfeI	GAWTC	2 cut(s)	270, 312
PflMI	CCANNNNNTGG	1 cut(s)	67
PkrI	GCNGC	2 cut(s)	143, 374
PleI	GAGTC	4 cut(s)	229, 246, 404, 426
PpsI	GAGTC	4 cut(s)	229, 246, 404, 426
Psp124BI	GAGCTC	1 cut(s)	54
Psp6I	CCWGG	1 cut(s)	288
PspGI	CCWGG	1 cut(s)	288
PspN4I	GGNNCC	2 cut(s)	145, 294
PspPI	GGNCC	1 cut(s)	85
PsuI	RGATCY	3 cut(s)	70, 257, 448
RsaI	GTAC	1 cut(s)	335
RsaNI	GTAC	1 cut(s)	334
RseI	CAYNNNNRTG	1 cut(s)	175
SacI	GAGCTC	1 cut(s)	54
SaqAI	TTAA	2 cut(s)	99, 105
SatI	GCNGC	2 cut(s)	142, 373
Sau3AI	GATC	4 cut(s)	70, 180, 257, 448
Sau96I	GGNCC	1 cut(s)	85
SchI	GAGTC	4 cut(s)	230, 246, 404, 427
ScrFI	CCNGG	1 cut(s)	290
SduI	GDGCHC	2 cut(s)	44, 54
SetI	ASST	6 cut(s)	54, 68, 87, 114, 304, 463
SfaNI	GCATC	1 cut(s)	390
SfuI	TTCGAA	1 cut(s)	33
SinI	GGWCC	1 cut(s)	85
SmiMI	CAYNNNNRTG	1 cut(s)	175
SmlI	CTYRAG	1 cut(s)	456
SmoI	CTYRAG	1 cut(s)	456
Sse9I	AATT	4 cut(s)	35, 100, 204, 274
SsiI	CCGC	1 cut(s)	141
SstI	GAGCTC	1 cut(s)	54
StyD4I	CCNGG	1 cut(s)	288
TaaI	ACNGT	2 cut(s)	407, 433
TaqI	TCGA	4 cut(s)	33, 173, 262, 278
TasI	AATT	4 cut(s)	35, 100, 204, 274
TatI	WGTACW	1 cut(s)	333
TauI	GCSGC	1 cut(s)	144
TfiI	GAWTC	2 cut(s)	270, 312
Tru1I	TTAA	2 cut(s)	99, 105
Tru9I	TTAA	2 cut(s)	99, 105
TscAI	CASTG	2 cut(s)	231, 438
TseFI	GTSAC	1 cut(s)	407
TseI	GCWGC	1 cut(s)	372
Tsp45I	GTSAC	1 cut(s)	407
TspDTI	ATGAA	1 cut(s)	92
TspGWI	ACGGA	2 cut(s)	62, 110
TspRI	CASTG	2 cut(s)	231, 438
Van91I	CCANNNNNTGG	1 cut(s)	67
VpaK11BI	GGWCC	1 cut(s)	85
XcmI	CCANNNNNNNNNTGG	1 cut(s)	174
XmiI	GTMKAC	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.