Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0003580

Physical Location & Seq

Genomic Coordinates Forward (+)

44377864 .. 44379939

Gene Structure 2076 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000003096

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2076 bp

ATGACGGACTACCGGATACCTCCCACCATGAATCTCTGGACGGACGACAACGCGTCTCTGATGGAAGCCTTCATGAGCAACTCCGATCTCACCTCCTTCTGGGCCGCCCAGCCGGCCCAGCCCGCAACACAACCCGCACATCCCCTCCACCAGCCTCAGTCCTCCGCTTCCACCTCCGACTATCCCCGCCCTCCGGCCGCGCAGTCGCAGTCACAGCCTCCGCCGCCGCCGGCCGCGGCGCCGTTCAACCAGGAGACGCTTATGCAGCGGCTTCAGGCGCTGATCGACGGAGCCAGGGAGAGCTGGACCTACGCCATCTTCTGGCAGTCGTCGTACGAGATGTCCGGAACTTCGGTTCTCGGATGGGGCGAGGGGTTCTACAAGGACGAGAGGGACAAGGTGAAAGCGAAGCCCAAAACGACGACGTCGTTGGTCGAGCAGGAGTACCGGAAGAAAGTGCTGAGAGACCTCAACTCTTTGATTTCCGGGGCCGACAACACCGCCGAGGACGACGTCGTGGATCAGGAAGTCACTGATACGGAATGGTTCTTCCTCGTCTCCATGACCCAGAACTTCGTCAACGGCGGCGGGTTGCCGGGTCAGGCTTTCATTCAGTCCAACCCGGTCTGGGTCGCCGGGACGGACCACCTCGCCGCCTCGTCGTGCGAGCGGGCCAGACAAGGTCAGGTGTTCGGCCTACAGACTATGGTCTGCGTCCCGACGGCGAATGGGGTCGTCGAGTTGGGCTCGACGGAGCTTATATACCAGAGCGCGGATCTGATGAACAAGGTCCGAGTGTTGTTTGATTTCAATAACCTTGAAGTCGGTTCTTGGCCTATGGGTGGCGCCGCCGATCAGGGAGAGAACGACCCGTCGTCACTGTGGATCAACGACAACCCGGCTAGCACAATTGAAGTTGTCAAGGACTCAGTGCACATGGGTCCGGCGACTTCAGGACCCAGTACTAGTAACCATCACATCTCGAAGCCGATTCAGTTCGACAGCCACCCTAGTTCGAGTGGCTTATCGGAGAATCCGAGCGCCGTTCTCCAAGTACAATCTCAGAGCAATCACCACCACCAAGCCCAGCAGCAAGTACAGACGCAGAGCTTCTTCACCAGGGAGCTGAACTTCTCCGATTACAACGGCTACGACGGCAGCAGCGTCAAGAATTCGAATTCCAATTCTCATTCCTTGAAGCCGGAATCCGGCGAGATATTGAACTTCGGCGAGAGCAAGAGGACATCTTACAGCGCCAACAACGGCAAGTTGTTTTCCGCTCAATCCCAAATCGCCGCCGAAGACACCAACAAAAAGAAGAGGTCGCCGCCTTCGAGGGGCAGCAACGACGAGGGGATCCTGTCGTTTAGTTCGGGAGTGATTCTACCGTCGAGCAGCGGCGTCGTGAAATCGAGCGCTGGCCCAGTAGATTCCGACCACTCCGACCTCGAAGCCTCCGTGGCTAGGGAGGCCGACAGTAGCAGAGTTGTGGACCCTGAAAAACGACCCCGGAAAAGAGGTCGTAAACCGGCGAACGGCAGAGAGGAGCCGCTGAACCACGTGGAGGCGGAGAGACAGAGAAGAGAGAAGCTCAACCAGAGATTCTATGCTCTCCGAGCTGTCGTCCCAAATGTTTCGAAAATGGACAAGGCATCTCTGCTTGGAGACGCCATCTCTTACATCACCGAGCTCAAGACGAAGCTGCAAACGACGGAGTCCGACAAGGAGGACCTCCACAAGCAAGTGGAGACGTTAAGTAAAGAGCTACAAGAGTCCCGACCGTCTTCGGGTTTGGACCAAGAGCTTAAAGGGTCTAATAAGTTGATCGATTTGGATATTGATGTGAAGATACTCGGATGGGACGCCAGGATTCAAATTCAATGTAGCAAGAAGAATCACCCTGCGGCGAGACTAATGGCGGCGCTGATGGAGCTGGACTTGGATGTACACCATGCCAGCGTCTCGGTAGTCAATGATTTGATGATCCAGCAAGCCACGGTGAGGATGGGCAGCCGGATTTACACGCAGGAGCAGCTCAGGTTAGCTCTATCAGCCAAAGTGGGGGATGCCAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005509 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006952 GO:0006970 GO:0006972 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009628 GO:0009651 GO:0009718 GO:0009719 GO:0009725 GO:0009753 GO:0009812 GO:0009813 GO:0009889 GO:0009891 GO:0009893 GO:0010033 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0042221 GO:0042440 GO:0042538 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043425 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0046148 GO:0046283 GO:0046872 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901576 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04016 ko04075 map04016 map04075

Pfam Domains

Protein Families

HLH bHLH-MYC_N

Protein Analysis

692

Amino Acids

75.84

Weight (kDa)

5.53

Isoelectric Point (pI)

48.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
bHLH-MYC_N	PF14215	87 - 268	6.2e-55	bHLH-MYC and R2R3-MYB transcription factors N-terminal
HLH	PF00010	519 - 565	1e-11	Helix-loop-helix DNA-binding domain
bHLH-TF_ACT-like_plant	PF22754	613 - 683	4e-07	Plant bHLH transcription factor, ACT-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003580)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G32640
fragaria_vesca	FvH4_1g13600 FvH4_1g13601 FvH4_4g17280 FvH4_5g22100 FvH4_6g24370 FvH4_6g25910
prunus_persica	Prupe.5G035400_v2.0.a1
pyrus_communis	pycom06g02850 pycom16g24430
rosa_chinensis	RchiOBHm_Chr7g0209751
rosa_laevigata	RLG00000003096 RLG00000008856 RLG00000036489 RLG00000036838
rosa_multiflora	Rmu_sc0000161.1_g000024 Rmu_sc0002616.1_g000020
rosa_roxburghii	Rroxscaffold_1G00006980
rosa_rugosa	Rorug05G0432900 Rorug07G0116000
rosa_samantha	Rh4DG124100 Rh5AG516700 Rh5AG518900 Rh5AG519400 Rh5BG540600 Rh5CG563400 Rh5DG551100 Rh5DG551400 Rh5DG551800 Rh7AG249600 Rh7BG243500 Rh7CG265600 Rh7DG255400
rosa_wichuraiana	Rw0G022750 Rw7G021160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	2 cut(s)	428, 516
AccB1I	GGYRCC	2 cut(s)	238, 845
AccB7I	CCANNNNNTGG	1 cut(s)	321
AccBSI	CCGCTC	2 cut(s)	670, 1280
AccII	CGCG	4 cut(s)	53, 200, 236, 773
AccIII	TCCGGA	1 cut(s)	344
AclWI	GGATC	6 cut(s)	528, 783, 893, 1351, 1364, 1978
AcoI	YGGCCR	2 cut(s)	195, 231
AcsI	RAATTY	3 cut(s)	1171, 1177, 1875
AcuI	CTGAAG	2 cut(s)	257, 936
AcvI	CACGTG	1 cut(s)	1561
AcyI	GRCGYC	7 cut(s)	239, 425, 513, 846, 1401, 1668, 1863
AfaI	GTAC	6 cut(s)	335, 446, 964, 1056, 1098, 1947
AfeI	AGCGCT	1 cut(s)	1417
AflIII	ACRYGT	1 cut(s)	51
AgsI	TTSAA	8 cut(s)	247, 811, 821, 914, 1198, 1222, 1874, 1880
AhdI	GACNNNNNGTC	2 cut(s)	52, 874
AhlI	ACTAGT	1 cut(s)	965
AjnI	CCWGG	4 cut(s)	249, 293, 1118, 1865
AloI	GAACNNNNNNTCC	2 cut(s)	339, 371
Alw21I	GWGCWC	2 cut(s)	936, 1692
Alw26I	GTCTC	9 cut(s)	60, 248, 459, 562, 1567, 1659, 1742, 1903, 1966
Alw44I	GTGCAC	1 cut(s)	932
AlwI	GGATC	6 cut(s)	528, 783, 893, 1351, 1364, 1978
AlwNI	CAGNNNCTG	1 cut(s)	280
Aor13HI	TCCGGA	1 cut(s)	344
Aor51HI	AGCGCT	1 cut(s)	1417
ApaLI	GTGCAC	1 cut(s)	932
ApeKI	GCWGC	9 cut(s)	265, 1090, 1158, 1161, 1341, 1395, 1702, 2010, 2032
ApoI	RAATTY	3 cut(s)	1171, 1177, 1875
AspLEI	GCGC	9 cut(s)	202, 241, 280, 773, 848, 1043, 1256, 1418, 1924
AsuC2I	CCSGG	6 cut(s)	487, 597, 623, 637, 899, 1510
AsuHPI	GGTGA	7 cut(s)	82, 412, 1064, 1108, 1675, 1889, 2011
AsuII	TTCGAA	2 cut(s)	1175, 1637
AsuNHI	GCTAGC	1 cut(s)	902
AvaII	GGWCC	8 cut(s)	306, 643, 790, 941, 956, 1492, 1729, 1795
BaeGI	GKGCMC	1 cut(s)	936
BamHI	GGATCC	1 cut(s)	1356
BanI	GGYRCC	2 cut(s)	238, 845
BanII	GRGCYC	2 cut(s)	749, 1692
BbrPI	CACGTG	1 cut(s)	1561
BbsI	GAAGAC	2 cut(s)	1308, 1776
Bbv12I	GWGCWC	2 cut(s)	936, 1692
BbvI	GCAGC	9 cut(s)	277, 1102, 1170, 1173, 1353, 1407, 1689, 2022, 2044
BccI	CCATC	8 cut(s)	55, 323, 357, 981, 1679, 1851, 1921, 1999
BceAI	ACGGC	8 cut(s)	226, 598, 738, 1028, 1162, 1171, 1279, 1552
BcgI	CGANNNNNNTGC	2 cut(s)	1384, 1418
BciT130I	CCWGG	4 cut(s)	251, 295, 1120, 1867
BciVI	GTATCC	1 cut(s)	9
BcnI	CCSGG	6 cut(s)	487, 597, 623, 637, 899, 1510
BcoDI	GTCTC	9 cut(s)	60, 248, 459, 562, 1567, 1659, 1742, 1903, 1966
BcuI	ACTAGT	1 cut(s)	965
BfaI	CTAG	4 cut(s)	903, 966, 1011, 1464
BfmI	CTRYAG	1 cut(s)	698
BfoI	RGCGCY	7 cut(s)	242, 281, 849, 1044, 1257, 1419, 1925
BfuI	GTATCC	1 cut(s)	9
BglI	GCCNNNNNGGC	2 cut(s)	113, 1460
BmcAI	AGTACT	1 cut(s)	964
Bme18I	GGWCC	8 cut(s)	306, 643, 790, 941, 956, 1492, 1729, 1795
BmeRI	GACNNNNNGTC	2 cut(s)	52, 874
BmiI	GGNNCC	9 cut(s)	240, 292, 490, 847, 942, 958, 1358, 1494, 1548
BmrI	ACTGGG	2 cut(s)	954, 1418
BmsI	GCATC	2 cut(s)	1661, 2056
BmtI	GCTAGC	1 cut(s)	906
BmuI	ACTGGG	2 cut(s)	954, 1418
BoxI	GACNNNNGTC	1 cut(s)	707
BpiI	GAAGAC	2 cut(s)	1308, 1776
BplI	GAGNNNNNCTC	4 cut(s)	731, 763, 1575, 1607
Bpu10I	CCTNAGC	1 cut(s)	2036
Bpu14I	TTCGAA	2 cut(s)	1175, 1637
BpuEI	CTTGAG	1 cut(s)	1676
BpuMI	CCSGG	6 cut(s)	487, 597, 623, 637, 899, 1510
Bsa29I	ATCGAT	1 cut(s)	1827
BsaAI	YACGTR	1 cut(s)	1561
BsaHI	GRCGYC	7 cut(s)	239, 425, 513, 846, 1401, 1668, 1863
BsaI	GGTCTC	1 cut(s)	459
BsaJI	CCNNGG	8 cut(s)	234, 294, 486, 504, 1119, 1458, 1508, 1995
BsaWI	WCCGGW	3 cut(s)	12, 344, 447
BsaXI	ACNNNNNCTCC	2 cut(s)	129, 159
Bse118I	RCCGGY	3 cut(s)	112, 229, 1528
Bse1I	ACTGG	2 cut(s)	960, 1424
BseAI	TCCGGA	1 cut(s)	344
BseBI	CCWGG	4 cut(s)	251, 295, 1120, 1867
BseCI	ATCGAT	1 cut(s)	1827
BseDI	CCNNGG	8 cut(s)	234, 294, 486, 504, 1119, 1458, 1508, 1995
BseGI	GGATG	6 cut(s)	139, 368, 1862, 1948, 2010, 2071
BseMII	CTCAG	5 cut(s)	170, 452, 942, 1076, 2050
BseNI	ACTGG	2 cut(s)	960, 1424
BseRI	GAGGAG	1 cut(s)	1559
BseSI	GKGCMC	1 cut(s)	936
BseX3I	CGGCCG	2 cut(s)	195, 231
BseXI	GCAGC	9 cut(s)	277, 1102, 1170, 1173, 1353, 1407, 1689, 2022, 2044
BseYI	CCCAGC	3 cut(s)	108, 117, 1086
Bsh1236I	CGCG	4 cut(s)	53, 200, 236, 773
Bsh1285I	CGRYCG	3 cut(s)	198, 234, 1781
BshNI	GGYRCC	2 cut(s)	238, 845
BshVI	ATCGAT	1 cut(s)	1827
BsiEI	CGRYCG	3 cut(s)	198, 234, 1781
BsiHKAI	GWGCWC	2 cut(s)	936, 1692
BsiWI	CGTACG	1 cut(s)	333
BslFI	GGGAC	6 cut(s)	407, 652, 701, 1610, 1759, 1874
BsmAI	GTCTC	9 cut(s)	60, 248, 459, 562, 1567, 1659, 1742, 1903, 1966
BsmBI	CGTCTC	6 cut(s)	60, 248, 562, 1659, 1742, 1966
BsmFI	GGGAC	6 cut(s)	407, 652, 701, 1610, 1759, 1874
Bso31I	GGTCTC	1 cut(s)	459
Bsp119I	TTCGAA	2 cut(s)	1175, 1637
Bsp1286I	GDGCHC	3 cut(s)	749, 936, 1692
Bsp13I	TCCGGA	1 cut(s)	344
Bsp1407I	TGTACA	1 cut(s)	1945
Bsp143I	GATC	9 cut(s)	85, 282, 520, 775, 853, 885, 1356, 1824, 1983
BspCNI	CTCAG	5 cut(s)	169, 453, 941, 1075, 2049
BspDI	ATCGAT	1 cut(s)	1827
BspEI	TCCGGA	1 cut(s)	344
BspFNI	CGCG	4 cut(s)	53, 200, 236, 773
BspHI	TCATGA	1 cut(s)	72
BspLI	GGNNCC	9 cut(s)	240, 292, 490, 847, 942, 958, 1358, 1494, 1548
BspOI	GCTAGC	1 cut(s)	906
BspPI	GGATC	6 cut(s)	528, 783, 893, 1351, 1364, 1978
BspT104I	TTCGAA	2 cut(s)	1175, 1637
BspT107I	GGYRCC	2 cut(s)	238, 845
BspTNI	GGTCTC	1 cut(s)	459
BsrBI	CCGCTC	2 cut(s)	670, 1280
BsrFI	RCCGGY	3 cut(s)	112, 229, 1528
BsrGI	TGTACA	1 cut(s)	1945
BsrI	ACTGG	2 cut(s)	960, 1424
BssAI	RCCGGY	3 cut(s)	112, 229, 1528
BssECI	CCNNGG	8 cut(s)	234, 294, 486, 504, 1119, 1458, 1508, 1995
BssMI	GATC	9 cut(s)	85, 282, 520, 775, 853, 885, 1356, 1824, 1983
BssNI	GRCGYC	7 cut(s)	239, 425, 513, 846, 1401, 1668, 1863
Bst2UI	CCWGG	4 cut(s)	251, 295, 1120, 1867
Bst4CI	ACNGT	5 cut(s)	882, 1389, 1478, 1782, 1999
Bst6I	CTCTTC	2 cut(s)	1313, 1576
BstACI	GRCGYC	7 cut(s)	239, 425, 513, 846, 1401, 1668, 1863
BstAUI	TGTACA	1 cut(s)	1945
BstBAI	YACGTR	1 cut(s)	1561
BstBI	TTCGAA	2 cut(s)	1175, 1637
BstC8I	GCNNGC	9 cut(s)	114, 123, 231, 668, 672, 904, 1420, 1957, 1992
BstDEI	CTNAG	5 cut(s)	156, 461, 928, 1062, 2036
BstDSI	CCRYGG	3 cut(s)	234, 1458, 1995
BstF5I	GGATG	6 cut(s)	139, 368, 1862, 1948, 2010, 2071
BstFNI	CGCG	4 cut(s)	53, 200, 236, 773
BstH2I	RGCGCY	7 cut(s)	242, 281, 849, 1044, 1257, 1419, 1925
BstHHI	GCGC	9 cut(s)	202, 241, 280, 773, 848, 1043, 1256, 1418, 1924
BstKTI	GATC	9 cut(s)	88, 285, 523, 778, 856, 888, 1359, 1827, 1986
BstMAI	GTCTC	9 cut(s)	60, 248, 459, 562, 1567, 1659, 1742, 1903, 1966
BstMBI	GATC	9 cut(s)	85, 282, 520, 775, 853, 885, 1356, 1824, 1983
BstMCI	CGRYCG	3 cut(s)	198, 234, 1781
BstNI	CCWGG	4 cut(s)	251, 295, 1120, 1867
BstPAI	GACNNNNGTC	1 cut(s)	707
BstSFI	CTRYAG	1 cut(s)	698
BstSLI	GKGCMC	1 cut(s)	936
BstUI	CGCG	4 cut(s)	53, 200, 236, 773
BstV1I	GCAGC	9 cut(s)	277, 1102, 1170, 1173, 1353, 1407, 1689, 2022, 2044
BstV2I	GAAGAC	2 cut(s)	1308, 1776
BstX2I	RGATCY	2 cut(s)	775, 1356
BstYI	RGATCY	2 cut(s)	775, 1356
BstZI	CGGCCG	2 cut(s)	195, 231
Bsu15I	ATCGAT	1 cut(s)	1827
BsuI	GTATCC	1 cut(s)	9
BsuTUI	ATCGAT	1 cut(s)	1827
BtgI	CCRYGG	3 cut(s)	234, 1458, 1995
BtsCI	GGATG	6 cut(s)	139, 368, 1862, 1948, 2010, 2071
BtsIMutI	CAGTG	3 cut(s)	531, 878, 936
Cac8I	GCNNGC	9 cut(s)	114, 123, 231, 668, 672, 904, 1420, 1957, 1992
CaiI	CAGNNNCTG	1 cut(s)	280
CciI	TCATGA	1 cut(s)	72
CfoI	GCGC	9 cut(s)	202, 241, 280, 773, 848, 1043, 1256, 1418, 1924
Cfr10I	RCCGGY	3 cut(s)	112, 229, 1528
Cfr42I	CCGCGG	1 cut(s)	237
ClaI	ATCGAT	1 cut(s)	1827
CseI	GACGC	9 cut(s)	42, 265, 703, 1111, 1153, 1390, 1676, 1871, 1948
Csp6I	GTAC	6 cut(s)	334, 445, 963, 1055, 1097, 1946
CviAII	CATG	5 cut(s)	28, 73, 562, 937, 1952
CviQI	GTAC	6 cut(s)	334, 445, 963, 1055, 1097, 1946
DdeI	CTNAG	5 cut(s)	156, 461, 928, 1062, 2036
DinI	GGCGCC	2 cut(s)	240, 847
DpnI	GATC	9 cut(s)	87, 284, 522, 777, 855, 887, 1358, 1826, 1985
DpnII	GATC	9 cut(s)	85, 282, 520, 775, 853, 885, 1356, 1824, 1983
DriI	GACNNNNNGTC	2 cut(s)	52, 874
EaeI	YGGCCR	2 cut(s)	195, 231
EagI	CGGCCG	2 cut(s)	195, 231
Eam1104I	CTCTTC	2 cut(s)	1313, 1576
Eam1105I	GACNNNNNGTC	2 cut(s)	52, 874
EarI	CTCTTC	2 cut(s)	1313, 1576
EciI	GGCGGA	2 cut(s)	210, 1583
Ecl136II	GAGCTC	1 cut(s)	1690
EclXI	CGGCCG	2 cut(s)	195, 231
Eco24I	GRGCYC	2 cut(s)	749, 1692
Eco31I	GGTCTC	1 cut(s)	459
Eco47I	GGWCC	8 cut(s)	306, 643, 790, 941, 956, 1492, 1729, 1795
Eco47III	AGCGCT	1 cut(s)	1417
Eco52I	CGGCCG	2 cut(s)	195, 231
Eco53kI	GAGCTC	1 cut(s)	1690
Eco57I	CTGAAG	2 cut(s)	257, 936
Eco72I	CACGTG	1 cut(s)	1561
EcoICRI	GAGCTC	1 cut(s)	1690
EcoO109I	RGGNCCY	2 cut(s)	956, 1729
EcoRI	GAATTC	2 cut(s)	1171, 1177
EcoRII	CCWGG	4 cut(s)	249, 293, 1118, 1865
EcoT38I	GRGCYC	2 cut(s)	749, 1692
EgeI	GGCGCC	2 cut(s)	240, 847
EheI	GGCGCC	2 cut(s)	240, 847
Esp3I	CGTCTC	6 cut(s)	60, 248, 562, 1659, 1742, 1966
FaeI	CATG	5 cut(s)	31, 76, 565, 940, 1955
FaqI	GGGAC	6 cut(s)	407, 652, 701, 1610, 1759, 1874
FatI	CATG	5 cut(s)	27, 72, 561, 936, 1951
FauI	CCCGC	5 cut(s)	130, 142, 194, 581, 663
FokI	GGATG	5 cut(s)	126, 375, 1869, 1955, 2017
FriOI	GRGCYC	2 cut(s)	749, 1692
FspBI	CTAG	4 cut(s)	903, 966, 1011, 1464
GlaI	GCGC	9 cut(s)	201, 240, 279, 772, 847, 1042, 1255, 1417, 1923
GsaI	CCCAGC	3 cut(s)	112, 121, 1090
HaeII	RGCGCY	7 cut(s)	242, 281, 849, 1044, 1257, 1419, 1925
HgaI	GACGC	9 cut(s)	42, 265, 703, 1111, 1153, 1390, 1676, 1871, 1948
HhaI	GCGC	9 cut(s)	202, 241, 280, 773, 848, 1043, 1256, 1418, 1924
Hin1I	GRCGYC	7 cut(s)	239, 425, 513, 846, 1401, 1668, 1863
Hin1II	CATG	5 cut(s)	31, 76, 565, 940, 1955
Hin6I	GCGC	9 cut(s)	200, 239, 278, 771, 846, 1041, 1254, 1416, 1922
HinP1I	GCGC	9 cut(s)	200, 239, 278, 771, 846, 1041, 1254, 1416, 1922
HincII	GTYRAC	1 cut(s)	580
HindII	GTYRAC	1 cut(s)	580
HphI	GGTGA	7 cut(s)	82, 412, 1064, 1108, 1675, 1889, 2011
Hpy166II	GTNNAC	5 cut(s)	580, 934, 1492, 1526, 1948
Hpy8I	GTNNAC	5 cut(s)	580, 934, 1492, 1526, 1948
HpyAV	CCTTC	3 cut(s)	79, 106, 1341
HpyCH4III	ACNGT	5 cut(s)	882, 1389, 1478, 1782, 1999
HpyCH4IV	ACGT	4 cut(s)	425, 513, 1560, 1751
HpyCH4V	TGCA	3 cut(s)	265, 934, 1705
HpyF3I	CTNAG	5 cut(s)	156, 461, 928, 1062, 2036
HpySE526I	ACGT	4 cut(s)	425, 513, 1560, 1751
Hsp92I	GRCGYC	7 cut(s)	239, 425, 513, 846, 1401, 1668, 1863
Hsp92II	CATG	5 cut(s)	31, 76, 565, 940, 1955
HspAI	GCGC	9 cut(s)	200, 239, 278, 771, 846, 1041, 1254, 1416, 1922
KasI	GGCGCC	2 cut(s)	238, 845
Kpn2I	TCCGGA	1 cut(s)	344
KroI	GCCGGC	2 cut(s)	112, 229
KroNI	GCCGGC	2 cut(s)	114, 231
KspI	CCGCGG	1 cut(s)	237
Kzo9I	GATC	9 cut(s)	85, 282, 520, 775, 853, 885, 1356, 1824, 1983
LmnI	GCTCC	6 cut(s)	290, 754, 1123, 1546, 1930, 2029
Lsp1109I	GCAGC	9 cut(s)	277, 1102, 1170, 1173, 1353, 1407, 1689, 2022, 2044
LweI	GCATC	2 cut(s)	1661, 2056
MaeI	CTAG	4 cut(s)	903, 966, 1011, 1464
MaeII	ACGT	4 cut(s)	425, 513, 1560, 1751
MaeIII	GTNAC	4 cut(s)	210, 529, 876, 968
MalI	GATC	9 cut(s)	87, 284, 522, 777, 855, 887, 1358, 1826, 1985
MbiI	CCGCTC	2 cut(s)	670, 1280
MboI	GATC	9 cut(s)	85, 282, 520, 775, 853, 885, 1356, 1824, 1983
MfeI	CAATTG	1 cut(s)	909
MflI	RGATCY	2 cut(s)	775, 1356
MhlI	GDGCHC	3 cut(s)	749, 936, 1692
MluCI	AATT	5 cut(s)	909, 1171, 1177, 1183, 1875
MluI	ACGCGT	1 cut(s)	51
Mly113I	GGCGCC	2 cut(s)	239, 846
MlyI	GAGTC	3 cut(s)	920, 1724, 1781
MmeI	TCCRAC	5 cut(s)	201, 642, 1458, 1467, 1743
MroI	TCCGGA	1 cut(s)	344
MroNI	GCCGGC	2 cut(s)	112, 229
MseI	TTAA	2 cut(s)	1754, 1806
MspA1I	CMGCKG	4 cut(s)	236, 268, 1398, 1552
MunI	CAATTG	1 cut(s)	909
MvaI	CCWGG	4 cut(s)	251, 295, 1120, 1867
MvnI	CGCG	4 cut(s)	53, 200, 236, 773
NaeI	GCCGGC	2 cut(s)	114, 231
NarI	GGCGCC	2 cut(s)	239, 846
NciI	CCSGG	6 cut(s)	487, 597, 623, 637, 899, 1510
NdeII	GATC	9 cut(s)	85, 282, 520, 775, 853, 885, 1356, 1824, 1983
NgoMIV	GCCGGC	2 cut(s)	112, 229
NheI	GCTAGC	1 cut(s)	902
NlaIII	CATG	5 cut(s)	31, 76, 565, 940, 1955
NlaIV	GGNNCC	9 cut(s)	240, 292, 490, 847, 942, 958, 1358, 1494, 1548
NmeAIII	GCCGAG	1 cut(s)	529
NmuCI	GTSAC	3 cut(s)	210, 529, 876
NspV	TTCGAA	2 cut(s)	1175, 1637
PagI	TCATGA	1 cut(s)	72
PcsI	WCGNNNNNNNCGW	6 cut(s)	366, 425, 1034, 1161, 1331, 1455
PdiI	GCCGGC	2 cut(s)	114, 231
PfeI	GAWTC	9 cut(s)	31, 991, 1033, 1205, 1381, 1430, 1602, 1870, 1894
Pfl23II	CGTACG	1 cut(s)	333
PflFI	GACNNNGTC	4 cut(s)	424, 512, 681, 1714
PflMI	CCANNNNNTGG	1 cut(s)	321
PleI	GAGTC	3 cut(s)	920, 1723, 1780
PluTI	GGCGCC	2 cut(s)	242, 849
PmaCI	CACGTG	1 cut(s)	1561
PmlI	CACGTG	1 cut(s)	1561
PpsI	GAGTC	3 cut(s)	920, 1723, 1780
Ppu21I	YACGTR	1 cut(s)	1561
PpuMI	RGGWCCY	2 cut(s)	956, 1729
PshAI	GACNNNNGTC	1 cut(s)	707
Psp124BI	GAGCTC	1 cut(s)	1692
Psp5II	RGGWCCY	2 cut(s)	956, 1729
Psp6I	CCWGG	4 cut(s)	249, 293, 1118, 1865
PspCI	CACGTG	1 cut(s)	1561
PspFI	CCCAGC	3 cut(s)	108, 117, 1086
PspGI	CCWGG	4 cut(s)	249, 293, 1118, 1865
PspLI	CGTACG	1 cut(s)	333
PspN4I	GGNNCC	9 cut(s)	240, 292, 490, 847, 942, 958, 1358, 1494, 1548
PspPPI	RGGWCCY	2 cut(s)	956, 1729
PstNI	CAGNNNCTG	1 cut(s)	280
PsuI	RGATCY	2 cut(s)	775, 1356
PsyI	GACNNNGTC	4 cut(s)	424, 512, 681, 1714
RsaI	GTAC	6 cut(s)	335, 446, 964, 1056, 1098, 1947
RsaNI	GTAC	6 cut(s)	334, 445, 963, 1055, 1097, 1946
SacI	GAGCTC	1 cut(s)	1692
SacII	CCGCGG	1 cut(s)	237
SaqAI	TTAA	2 cut(s)	1754, 1806
Sau3AI	GATC	9 cut(s)	85, 282, 520, 775, 853, 885, 1356, 1824, 1983
ScaI	AGTACT	1 cut(s)	964
SchI	GAGTC	3 cut(s)	920, 1724, 1781
SduI	GDGCHC	3 cut(s)	749, 936, 1692
SfaNI	GCATC	2 cut(s)	1661, 2056
SfcI	CTRYAG	1 cut(s)	698
SfoI	GGCGCC	2 cut(s)	240, 847
Sfr303I	CCGCGG	1 cut(s)	237
SfuI	TTCGAA	2 cut(s)	1175, 1637
SgrBI	CCGCGG	1 cut(s)	237
SinI	GGWCC	8 cut(s)	306, 643, 790, 941, 956, 1492, 1729, 1795
SmlI	CTYRAG	1 cut(s)	1691
SmoI	CTYRAG	1 cut(s)	1691
SpeI	ACTAGT	1 cut(s)	965
Sse9I	AATT	5 cut(s)	909, 1171, 1177, 1183, 1875
SspDI	GGCGCC	2 cut(s)	238, 845
SspMI	CTAG	4 cut(s)	903, 966, 1011, 1464
SstI	GAGCTC	1 cut(s)	1692
TaaI	ACNGT	5 cut(s)	882, 1389, 1478, 1782, 1999
TaiI	ACGT	4 cut(s)	428, 516, 1563, 1754
TasI	AATT	5 cut(s)	909, 1171, 1177, 1183, 1875
TatI	WGTACW	4 cut(s)	962, 1054, 1096, 1945
TfiI	GAWTC	9 cut(s)	31, 991, 1033, 1205, 1381, 1430, 1602, 1870, 1894
Tru1I	TTAA	2 cut(s)	1754, 1806
Tru9I	TTAA	2 cut(s)	1754, 1806
TscAI	CASTG	3 cut(s)	538, 885, 936
TseFI	GTSAC	3 cut(s)	210, 529, 876
TseI	GCWGC	9 cut(s)	265, 1090, 1158, 1161, 1341, 1395, 1702, 2010, 2032
Tsp45I	GTSAC	3 cut(s)	210, 529, 876
TspDTI	ATGAA	4 cut(s)	44, 61, 598, 797
TspGWI	ACGGA	8 cut(s)	20, 56, 303, 554, 656, 767, 1447, 1727
TspRI	CASTG	3 cut(s)	538, 885, 936
Tth111I	GACNNNGTC	4 cut(s)	424, 512, 681, 1714
Van91I	CCANNNNNTGG	1 cut(s)	321
VneI	GTGCAC	1 cut(s)	932
VpaK11BI	GGWCC	8 cut(s)	306, 643, 790, 941, 956, 1492, 1729, 1795
XapI	RAATTY	3 cut(s)	1171, 1177, 1875
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2002
XspI	CTAG	4 cut(s)	903, 966, 1011, 1464
ZraI	GACGTC	2 cut(s)	426, 514
ZrmI	AGTACT	1 cut(s)	964

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.