Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0003580

Physical Location & Seq

Genomic Coordinates Reverse (-)

84968762 .. 84969112

Gene Structure 351 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG551800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 351 bp

ATGTCGGACTATCCCCGCCCTCCGGCTGTAGCGCCGTTGAACCAGGAGACGCTGCAGCAGCGGCTCCAGGCGCTGATTGAGGGCGCAAGGGAGAGCTGGACCTATGCCATCTTCTGGCAGTCGTTGTACGACATGTTGGGAGCTTCCGTTCTCAAATGGGGCGACGGGTATTACAAGGGCGAGAGTGACAGATGGAAAGCGAGGCCCAGAAAGACGCCGTCATTGGTCGAGCAGGAGTACCGGAAGAAAGTGCTCAGGGACCTCAACTCTTTGATTTCTGGGGCCGACACCACTGCCGACGACGCGGTCGTAGATCAAGTCACTGGTACAGAATGGTTCTTCCATGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005509 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006952 GO:0006970 GO:0006972 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009628 GO:0009651 GO:0009718 GO:0009719 GO:0009725 GO:0009753 GO:0009812 GO:0009813 GO:0009889 GO:0009891 GO:0009893 GO:0010033 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0042221 GO:0042440 GO:0042538 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043425 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0046148 GO:0046283 GO:0046872 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901576 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04016 ko04075 map04016 map04075

Pfam Domains

Protein Families

HLH bHLH-MYC_N

Protein Analysis

116

Amino Acids

13.34

Weight (kDa)

5.14

Isoelectric Point (pI)

41.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
bHLH-MYC_N	PF14215	18 - 114	1.8e-21	bHLH-MYC and R2R3-MYB transcription factors N-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003580)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G32640
fragaria_vesca	FvH4_1g13600 FvH4_1g13601 FvH4_4g17280 FvH4_5g22100 FvH4_6g24370 FvH4_6g25910
prunus_persica	Prupe.5G035400_v2.0.a1
pyrus_communis	pycom06g02850 pycom16g24430
rosa_chinensis	RchiOBHm_Chr7g0209751
rosa_laevigata	RLG00000003096 RLG00000008856 RLG00000036489 RLG00000036838
rosa_multiflora	Rmu_sc0000161.1_g000024 Rmu_sc0002616.1_g000020
rosa_roxburghii	Rroxscaffold_1G00006980
rosa_rugosa	Rorug05G0432900 Rorug07G0116000
rosa_samantha	Rh4DG124100 Rh5AG516700 Rh5AG518900 Rh5AG519400 Rh5BG540600 Rh5CG563400 Rh5DG551100 Rh5DG551400 Rh5DG551800 Rh7AG249600 Rh7BG243500 Rh7CG265600 Rh7DG255400
rosa_wichuraiana	Rw0G022750 Rw7G021160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	305
AccB7I	CCANNNNNTGG	1 cut(s)	114
AccII	CGCG	1 cut(s)	305
AciI	CCGC	3 cut(s)	16, 61, 305
AcyI	GRCGYC	1 cut(s)	215
AfaI	GTAC	3 cut(s)	128, 239, 328
AfiI	CCNNNNNNNGG	2 cut(s)	22, 114
AflIII	ACRYGT	1 cut(s)	132
AgsI	TTSAA	1 cut(s)	40
AjnI	CCWGG	2 cut(s)	42, 66
AloI	GAACNNNNNNTCC	2 cut(s)	132, 164
AluBI	AGCT	2 cut(s)	96, 143
AluI	AGCT	2 cut(s)	96, 143
Alw21I	GWGCWC	1 cut(s)	255
Alw26I	GTCTC	1 cut(s)	41
AlwNI	CAGNNNCTG	1 cut(s)	73
AoxI	GGCC	2 cut(s)	203, 282
ApeKI	GCWGC	3 cut(s)	52, 55, 58
AspLEI	GCGC	3 cut(s)	34, 73, 86
AspS9I	GGNCC	4 cut(s)	99, 204, 259, 282
AvaII	GGWCC	2 cut(s)	99, 259
Bbv12I	GWGCWC	1 cut(s)	255
BbvI	GCAGC	3 cut(s)	39, 67, 70
BccI	CCATC	2 cut(s)	116, 186
BceAI	ACGGC	2 cut(s)	19, 202
BcgI	CGANNNNNNTGC	2 cut(s)	275, 309
BciT130I	CCWGG	2 cut(s)	44, 68
BcoDI	GTCTC	1 cut(s)	41
BfmI	CTRYAG	2 cut(s)	27, 53
BfoI	RGCGCY	2 cut(s)	35, 74
BisI	GCNGC	4 cut(s)	53, 56, 59, 62
BlsI	GCNGC	4 cut(s)	54, 57, 60, 63
Bme1390I	CCNGG	2 cut(s)	44, 68
Bme18I	GGWCC	2 cut(s)	99, 259
BmgT120I	GGNCC	4 cut(s)	99, 204, 259, 282
BmiI	GGNNCC	3 cut(s)	65, 260, 283
BmrFI	CCNGG	2 cut(s)	44, 68
BpmI	CTGGAG	1 cut(s)	50
Bpu10I	CCTNAGC	1 cut(s)	254
BsaHI	GRCGYC	1 cut(s)	215
BsaWI	WCCGGW	1 cut(s)	240
BsaXI	ACNNNNNCTCC	2 cut(s)	132, 162
Bsc4I	CCNNNNNNNGG	2 cut(s)	22, 114
Bse1I	ACTGG	1 cut(s)	328
BseBI	CCWGG	2 cut(s)	44, 68
BseLI	CCNNNNNNNGG	2 cut(s)	22, 114
BseMII	CTCAG	1 cut(s)	268
BseNI	ACTGG	1 cut(s)	328
BseXI	GCAGC	3 cut(s)	39, 67, 70
Bsh1236I	CGCG	1 cut(s)	305
Bsh1285I	CGRYCG	1 cut(s)	309
BshFI	GGCC	2 cut(s)	205, 284
BsiEI	CGRYCG	1 cut(s)	309
BsiHKAI	GWGCWC	1 cut(s)	255
BsiSI	CCGG	2 cut(s)	23, 241
BslFI	GGGAC	1 cut(s)	272
BslI	CCNNNNNNNGG	2 cut(s)	22, 114
BsmAI	GTCTC	1 cut(s)	41
BsmBI	CGTCTC	1 cut(s)	41
BsmFI	GGGAC	1 cut(s)	272
BsnI	GGCC	2 cut(s)	205, 284
Bsp1286I	GDGCHC	1 cut(s)	255
Bsp143I	GATC	1 cut(s)	313
BspACI	CCGC	3 cut(s)	16, 61, 305
BspANI	GGCC	2 cut(s)	205, 284
BspCNI	CTCAG	1 cut(s)	267
BspFNI	CGCG	1 cut(s)	305
BspLI	GGNNCC	3 cut(s)	65, 260, 283
BspMAI	CTGCAG	1 cut(s)	57
BsrI	ACTGG	1 cut(s)	328
BssMI	GATC	1 cut(s)	313
BssNI	GRCGYC	1 cut(s)	215
Bst2UI	CCWGG	2 cut(s)	44, 68
BstACI	GRCGYC	1 cut(s)	215
BstDEI	CTNAG	1 cut(s)	254
BstFNI	CGCG	1 cut(s)	305
BstH2I	RGCGCY	2 cut(s)	35, 74
BstHHI	GCGC	3 cut(s)	34, 73, 86
BstKTI	GATC	1 cut(s)	316
BstMAI	GTCTC	1 cut(s)	41
BstMBI	GATC	1 cut(s)	313
BstMCI	CGRYCG	1 cut(s)	309
BstMWI	GCNNNNNNNGC	4 cut(s)	58, 61, 70, 302
BstNI	CCWGG	2 cut(s)	44, 68
BstNSI	RCATGY	1 cut(s)	136
BstSCI	CCNGG	2 cut(s)	42, 66
BstSFI	CTRYAG	2 cut(s)	27, 53
BstUI	CGCG	1 cut(s)	305
BstV1I	GCAGC	3 cut(s)	39, 67, 70
BsuRI	GGCC	2 cut(s)	205, 284
BtsI	GCAGTG	1 cut(s)	291
BtsIMutI	CAGTG	2 cut(s)	291, 321
CaiI	CAGNNNCTG	1 cut(s)	73
CfoI	GCGC	3 cut(s)	34, 73, 86
Cfr13I	GGNCC	4 cut(s)	99, 204, 259, 282
CseI	GACGC	3 cut(s)	58, 223, 311
Csp6I	GTAC	3 cut(s)	127, 238, 327
CviAII	CATG	2 cut(s)	133, 344
CviJI	RGCY	6 cut(s)	26, 64, 96, 143, 205, 284
CviKI_1	RGCY	6 cut(s)	26, 64, 96, 143, 205, 284
CviQI	GTAC	3 cut(s)	127, 238, 327
DdeI	CTNAG	1 cut(s)	254
DpnI	GATC	1 cut(s)	315
DpnII	GATC	1 cut(s)	313
DrdI	GACNNNNNNGTC	1 cut(s)	305
DseDI	GACNNNNNNGTC	1 cut(s)	305
Eco47I	GGWCC	2 cut(s)	99, 259
EcoO109I	RGGNCCY	1 cut(s)	259
EcoRII	CCWGG	2 cut(s)	42, 66
Esp3I	CGTCTC	1 cut(s)	41
FaeI	CATG	2 cut(s)	136, 347
FaiI	YATR	3 cut(s)	105, 134, 345
FaqI	GGGAC	1 cut(s)	272
FatI	CATG	2 cut(s)	132, 343
FauI	CCCGC	1 cut(s)	23
Fnu4HI	GCNGC	4 cut(s)	53, 56, 59, 62
Fsp4HI	GCNGC	4 cut(s)	53, 56, 59, 62
GlaI	GCGC	3 cut(s)	33, 72, 85
GluI	GCNGC	4 cut(s)	53, 56, 59, 62
GsuI	CTGGAG	1 cut(s)	50
HaeII	RGCGCY	2 cut(s)	35, 74
HaeIII	GGCC	2 cut(s)	205, 284
HapII	CCGG	2 cut(s)	23, 241
HgaI	GACGC	3 cut(s)	58, 223, 311
HhaI	GCGC	3 cut(s)	34, 73, 86
Hin1I	GRCGYC	1 cut(s)	215
Hin1II	CATG	2 cut(s)	136, 347
Hin6I	GCGC	3 cut(s)	32, 71, 84
HinP1I	GCGC	3 cut(s)	32, 71, 84
HpaII	CCGG	2 cut(s)	23, 241
Hpy188I	TCNGA	1 cut(s)	7
Hpy99I	CGWCG	3 cut(s)	167, 302, 305
HpyCH4V	TGCA	1 cut(s)	55
HpyF10VI	GCNNNNNNNGC	4 cut(s)	58, 61, 70, 302
HpyF3I	CTNAG	1 cut(s)	254
Hsp92I	GRCGYC	1 cut(s)	215
Hsp92II	CATG	2 cut(s)	136, 347
HspAI	GCGC	3 cut(s)	32, 71, 84
Kzo9I	GATC	1 cut(s)	313
LmnI	GCTCC	2 cut(s)	69, 140
Lsp1109I	GCAGC	3 cut(s)	39, 67, 70
MaeIII	GTNAC	2 cut(s)	185, 319
MalI	GATC	1 cut(s)	315
MboI	GATC	1 cut(s)	313
MboII	GAAGA	3 cut(s)	103, 256, 331
MhlI	GDGCHC	1 cut(s)	255
MnlI	CCTC	4 cut(s)	30, 73, 195, 272
MspA1I	CMGCKG	1 cut(s)	61
MspI	CCGG	2 cut(s)	23, 241
MspR9I	CCNGG	2 cut(s)	44, 68
MvaI	CCWGG	2 cut(s)	44, 68
MvnI	CGCG	1 cut(s)	305
MwoI	GCNNNNNNNGC	4 cut(s)	58, 61, 70, 302
NdeII	GATC	1 cut(s)	313
NlaIII	CATG	2 cut(s)	136, 347
NlaIV	GGNNCC	3 cut(s)	65, 260, 283
NmuCI	GTSAC	2 cut(s)	185, 319
NspI	RCATGY	1 cut(s)	136
PciI	ACATGT	1 cut(s)	132
PcsI	WCGNNNNNNNCGW	1 cut(s)	306
PflFI	GACNNNGTC	2 cut(s)	217, 305
PflMI	CCANNNNNTGG	1 cut(s)	114
PkrI	GCNGC	4 cut(s)	54, 57, 60, 63
PpuMI	RGGWCCY	1 cut(s)	259
PscI	ACATGT	1 cut(s)	132
Psp5II	RGGWCCY	1 cut(s)	259
Psp6I	CCWGG	2 cut(s)	42, 66
PspGI	CCWGG	2 cut(s)	42, 66
PspN4I	GGNNCC	3 cut(s)	65, 260, 283
PspPI	GGNCC	4 cut(s)	99, 204, 259, 282
PspPPI	RGGWCCY	1 cut(s)	259
PstI	CTGCAG	1 cut(s)	57
PstNI	CAGNNNCTG	1 cut(s)	73
PsyI	GACNNNGTC	2 cut(s)	217, 305
RsaI	GTAC	3 cut(s)	128, 239, 328
RsaNI	GTAC	3 cut(s)	127, 238, 327
SatI	GCNGC	4 cut(s)	53, 56, 59, 62
Sau3AI	GATC	1 cut(s)	313
Sau96I	GGNCC	4 cut(s)	99, 204, 259, 282
ScrFI	CCNGG	2 cut(s)	44, 68
SduI	GDGCHC	1 cut(s)	255
SetI	ASST	4 cut(s)	98, 104, 145, 264
SfcI	CTRYAG	2 cut(s)	27, 53
SinI	GGWCC	2 cut(s)	99, 259
SsiI	CCGC	3 cut(s)	16, 61, 305
StyD4I	CCNGG	2 cut(s)	42, 66
TaqI	TCGA	1 cut(s)	228
TauI	GCSGC	1 cut(s)	64
TscAI	CASTG	2 cut(s)	298, 328
TseFI	GTSAC	2 cut(s)	185, 319
TseI	GCWGC	3 cut(s)	52, 55, 58
Tsp45I	GTSAC	2 cut(s)	185, 319
TspGWI	ACGGA	1 cut(s)	136
TspRI	CASTG	2 cut(s)	298, 328
Tth111I	GACNNNGTC	2 cut(s)	217, 305
Van91I	CCANNNNNTGG	1 cut(s)	114
VpaK11BI	GGWCC	2 cut(s)	99, 259
XceI	RCATGY	1 cut(s)	136

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.