Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0003580

Physical Location & Seq

Genomic Coordinates Forward (+)

21243591 .. 21244163

Gene Structure 573 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g17280.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 573 bp

ATGGACTACCGGATACCACCCACCATGAATCTCTGGACAGACGACAACGCCTCCCTCATGGAGGCCTTCATGAGCAACTCCGATCTCACCTCCTTCTGGGCCACCCAGCCCGCCGCCCACCCCTTCCACCAGCCCCAGTCTTTGGCTTCCACGATGAACTACCCCCGCCCCCCAACGCAAGCGCCGGCTCCGGTATCGGCGCCGTTCAACCAGGAGACCCTTATGCAGCGGCTGCAGGCCTTGATCGAGGGCGCCAAGGAGAGCTGGACCTACACCATCTTCTGGCAGTCGTCGTATGACATGTCGGGCGCCTCCGTGCTCAGTTGGGGCGAGGGGTTCTACAAGGACGAGAGGCCATACCACCTAGCCGCCTCTTCTTGCGAGCGTGTCCGCCAAGGTCAGGTGTTCGGGCTTCAAACCATGGTCTGCGTCCCGACAGTGAACGACGTGGTCGAGTTGGGCTCGATTGAGCTCATATTCCAAAGCTCGAATCTGATGAACAAGATCCGGGTTTTATTTGACTTCAACAATCTTGAAGTCGGTTCTTGGCTTATAAGCGGCGCTGCCGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005509 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006952 GO:0006970 GO:0006972 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009628 GO:0009651 GO:0009718 GO:0009719 GO:0009725 GO:0009753 GO:0009812 GO:0009813 GO:0009889 GO:0009891 GO:0009893 GO:0010033 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0042221 GO:0042440 GO:0042538 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043425 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0046148 GO:0046283 GO:0046872 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901576 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04016 ko04075 map04016 map04075

Pfam Domains

Protein Families

HLH bHLH-MYC_N

Protein Analysis

191

Amino Acids

21.33

Weight (kDa)

4.65

Isoelectric Point (pI)

50.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
bHLH-MYC_N	PF14215	74 - 117	1.5e-11	bHLH-MYC and R2R3-MYB transcription factors N-terminal
bHLH-MYC_N	PF14215	123 - 173	4.3e-11	bHLH-MYC and R2R3-MYB transcription factors N-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003580)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G32640
fragaria_vesca	FvH4_1g13600 FvH4_1g13601 FvH4_4g17280 FvH4_5g22100 FvH4_6g24370 FvH4_6g25910
prunus_persica	Prupe.5G035400_v2.0.a1
pyrus_communis	pycom06g02850 pycom16g24430
rosa_chinensis	RchiOBHm_Chr7g0209751
rosa_laevigata	RLG00000003096 RLG00000008856 RLG00000036489 RLG00000036838
rosa_multiflora	Rmu_sc0000161.1_g000024 Rmu_sc0002616.1_g000020
rosa_roxburghii	Rroxscaffold_1G00006980
rosa_rugosa	Rorug05G0432900 Rorug07G0116000
rosa_samantha	Rh4DG124100 Rh5AG516700 Rh5AG518900 Rh5AG519400 Rh5BG540600 Rh5CG563400 Rh5DG551100 Rh5DG551400 Rh5DG551800 Rh7AG249600 Rh7BG243500 Rh7CG265600 Rh7DG255400
rosa_wichuraiana	Rw0G022750 Rw7G021160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	554
AccB1I	GGYRCC	3 cut(s)	199, 251, 308
AccB7I	CCANNNNNTGG	2 cut(s)	142, 282
AciI	CCGC	7 cut(s)	111, 114, 166, 229, 369, 391, 558
AclWI	GGATC	1 cut(s)	499
AcyI	GRCGYC	3 cut(s)	200, 252, 309
AfiI	CCNNNNNNNGG	5 cut(s)	61, 96, 142, 282, 400
AflIII	ACRYGT	1 cut(s)	300
AgsI	TTSAA	4 cut(s)	208, 416, 526, 536
AjiI	CACGTC	1 cut(s)	448
AjnI	CCWGG	1 cut(s)	210
AluBI	AGCT	3 cut(s)	264, 472, 486
AluI	AGCT	3 cut(s)	264, 472, 486
Alw21I	GWGCWC	2 cut(s)	321, 474
Alw26I	GTCTC	1 cut(s)	209
AlwI	GGATC	1 cut(s)	499
AlwNI	CAGNNNCTG	1 cut(s)	232
AoxI	GGCC	4 cut(s)	63, 99, 237, 353
ApeKI	GCWGC	3 cut(s)	226, 232, 563
AspLEI	GCGC	5 cut(s)	184, 202, 254, 311, 563
AspS9I	GGNCC	2 cut(s)	99, 267
AsuC2I	CCSGG	1 cut(s)	509
AsuHPI	GGTGA	1 cut(s)	79
AvaII	GGWCC	1 cut(s)	267
BanI	GGYRCC	3 cut(s)	199, 251, 308
BanII	GRGCYC	2 cut(s)	464, 474
Bbv12I	GWGCWC	2 cut(s)	321, 474
BbvI	GCAGC	3 cut(s)	219, 238, 550
BccI	CCATC	1 cut(s)	284
BceAI	ACGGC	1 cut(s)	187
BciT130I	CCWGG	1 cut(s)	212
BciVI	GTATCC	1 cut(s)	6
BcnI	CCSGG	1 cut(s)	509
BcoDI	GTCTC	1 cut(s)	209
BfaI	CTAG	1 cut(s)	365
BfmI	CTRYAG	1 cut(s)	233
BfoI	RGCGCY	5 cut(s)	185, 203, 255, 312, 564
BfuI	GTATCC	1 cut(s)	6
BisI	GCNGC	7 cut(s)	114, 227, 230, 233, 369, 559, 564
BlsI	GCNGC	7 cut(s)	115, 228, 231, 234, 370, 560, 565
Bme1390I	CCNGG	2 cut(s)	212, 509
Bme18I	GGWCC	1 cut(s)	267
BmgBI	CACGTC	1 cut(s)	448
BmgT120I	GGNCC	2 cut(s)	99, 267
BmiI	GGNNCC	4 cut(s)	189, 201, 253, 310
BmrFI	CCNGG	2 cut(s)	212, 509
BmrI	ACTGGG	1 cut(s)	130
BmuI	ACTGGG	1 cut(s)	130
BplI	GAGNNNNNCTC	2 cut(s)	446, 478
BpuMI	CCSGG	1 cut(s)	509
BsaHI	GRCGYC	3 cut(s)	200, 252, 309
BsaI	GGTCTC	1 cut(s)	209
BsaJI	CCNNGG	3 cut(s)	255, 394, 420
BsaWI	WCCGGW	2 cut(s)	9, 190
BsaXI	ACNNNNNCTCC	2 cut(s)	35, 65
Bsc4I	CCNNNNNNNGG	5 cut(s)	61, 96, 142, 282, 400
Bse118I	RCCGGY	1 cut(s)	184
Bse1I	ACTGG	1 cut(s)	136
BseBI	CCWGG	1 cut(s)	212
BseDI	CCNNGG	3 cut(s)	255, 394, 420
BseLI	CCNNNNNNNGG	5 cut(s)	61, 96, 142, 282, 400
BseMII	CTCAG	1 cut(s)	334
BseNI	ACTGG	1 cut(s)	136
BseXI	GCAGC	3 cut(s)	219, 238, 550
BseYI	CCCAGC	1 cut(s)	105
BshFI	GGCC	4 cut(s)	65, 101, 239, 355
BshNI	GGYRCC	3 cut(s)	199, 251, 308
BsiHKAI	GWGCWC	2 cut(s)	321, 474
BsiSI	CCGG	4 cut(s)	10, 185, 191, 508
BslFI	GGGAC	1 cut(s)	416
BslI	CCNNNNNNNGG	5 cut(s)	61, 96, 142, 282, 400
BsmAI	GTCTC	1 cut(s)	209
BsmFI	GGGAC	1 cut(s)	416
BsnI	GGCC	4 cut(s)	65, 101, 239, 355
Bso31I	GGTCTC	1 cut(s)	209
Bsp1286I	GDGCHC	3 cut(s)	321, 464, 474
Bsp143I	GATC	3 cut(s)	82, 243, 504
Bsp19I	CCATGG	1 cut(s)	420
BspACI	CCGC	7 cut(s)	111, 114, 166, 229, 369, 391, 558
BspANI	GGCC	4 cut(s)	65, 101, 239, 355
BspCNI	CTCAG	1 cut(s)	333
BspHI	TCATGA	1 cut(s)	69
BspLI	GGNNCC	4 cut(s)	189, 201, 253, 310
BspMAI	CTGCAG	1 cut(s)	237
BspPI	GGATC	1 cut(s)	499
BspT107I	GGYRCC	3 cut(s)	199, 251, 308
BspTNI	GGTCTC	1 cut(s)	209
BsrFI	RCCGGY	1 cut(s)	184
BsrI	ACTGG	1 cut(s)	136
BssAI	RCCGGY	1 cut(s)	184
BssECI	CCNNGG	3 cut(s)	255, 394, 420
BssMI	GATC	3 cut(s)	82, 243, 504
BssNI	GRCGYC	3 cut(s)	200, 252, 309
BssT1I	CCWWGG	3 cut(s)	255, 394, 420
Bst2UI	CCWGG	1 cut(s)	212
Bst4CI	ACNGT	1 cut(s)	439
Bst6I	CTCTTC	1 cut(s)	379
BstACI	GRCGYC	3 cut(s)	200, 252, 309
BstAPI	GCANNNNNTGC	1 cut(s)	232
BstC8I	GCNNGC	5 cut(s)	111, 180, 186, 237, 383
BstDEI	CTNAG	1 cut(s)	320
BstDSI	CCRYGG	1 cut(s)	420
BstENI	CCTNNNNNAGG	1 cut(s)	59
BstH2I	RGCGCY	5 cut(s)	185, 203, 255, 312, 564
BstHHI	GCGC	5 cut(s)	184, 202, 254, 311, 563
BstKTI	GATC	3 cut(s)	85, 246, 507
BstMAI	GTCTC	1 cut(s)	209
BstMBI	GATC	3 cut(s)	82, 243, 504
BstMWI	GCNNNNNNNGC	1 cut(s)	232
BstNI	CCWGG	1 cut(s)	212
BstNSI	RCATGY	1 cut(s)	304
BstSCI	CCNGG	2 cut(s)	210, 507
BstSFI	CTRYAG	1 cut(s)	233
BstV1I	GCAGC	3 cut(s)	219, 238, 550
BstX2I	RGATCY	1 cut(s)	504
BstYI	RGATCY	1 cut(s)	504
BsuI	GTATCC	1 cut(s)	6
BsuRI	GGCC	4 cut(s)	65, 101, 239, 355
BtgI	CCRYGG	1 cut(s)	420
BtrI	CACGTC	1 cut(s)	448
BtsIMutI	CAGTG	1 cut(s)	444
Cac8I	GCNNGC	5 cut(s)	111, 180, 186, 237, 383
CaiI	CAGNNNCTG	1 cut(s)	232
CciI	TCATGA	1 cut(s)	69
CfoI	GCGC	5 cut(s)	184, 202, 254, 311, 563
Cfr10I	RCCGGY	1 cut(s)	184
Cfr13I	GGNCC	2 cut(s)	99, 267
CseI	GACGC	1 cut(s)	418
CviAII	CATG	5 cut(s)	25, 58, 70, 301, 421
DdeI	CTNAG	1 cut(s)	320
DinI	GGCGCC	3 cut(s)	201, 253, 310
DpnI	GATC	3 cut(s)	84, 245, 506
DpnII	GATC	3 cut(s)	82, 243, 504
Eam1104I	CTCTTC	1 cut(s)	379
EarI	CTCTTC	1 cut(s)	379
EciI	GGCGGA	1 cut(s)	380
Ecl136II	GAGCTC	1 cut(s)	472
Eco130I	CCWWGG	3 cut(s)	255, 394, 420
Eco147I	AGGCCT	2 cut(s)	65, 239
Eco24I	GRGCYC	2 cut(s)	464, 474
Eco31I	GGTCTC	1 cut(s)	209
Eco47I	GGWCC	1 cut(s)	267
Eco53kI	GAGCTC	1 cut(s)	472
EcoICRI	GAGCTC	1 cut(s)	472
EcoNI	CCTNNNNNAGG	1 cut(s)	59
EcoRII	CCWGG	1 cut(s)	210
EcoT14I	CCWWGG	3 cut(s)	255, 394, 420
EcoT38I	GRGCYC	2 cut(s)	464, 474
EgeI	GGCGCC	3 cut(s)	201, 253, 310
EheI	GGCGCC	3 cut(s)	201, 253, 310
ErhI	CCWWGG	3 cut(s)	255, 394, 420
FaeI	CATG	5 cut(s)	28, 61, 73, 304, 424
FaqI	GGGAC	1 cut(s)	416
FatI	CATG	5 cut(s)	24, 57, 69, 300, 420
FauI	CCCGC	2 cut(s)	118, 173
Fnu4HI	GCNGC	7 cut(s)	114, 227, 230, 233, 369, 559, 564
FriOI	GRGCYC	2 cut(s)	464, 474
Fsp4HI	GCNGC	7 cut(s)	114, 227, 230, 233, 369, 559, 564
FspBI	CTAG	1 cut(s)	365
GlaI	GCGC	5 cut(s)	183, 201, 253, 310, 562
GluI	GCNGC	7 cut(s)	114, 227, 230, 233, 369, 559, 564
GsaI	CCCAGC	1 cut(s)	109
HaeII	RGCGCY	5 cut(s)	185, 203, 255, 312, 564
HaeIII	GGCC	4 cut(s)	65, 101, 239, 355
HapII	CCGG	4 cut(s)	10, 185, 191, 508
HgaI	GACGC	1 cut(s)	418
HhaI	GCGC	5 cut(s)	184, 202, 254, 311, 563
Hin1I	GRCGYC	3 cut(s)	200, 252, 309
Hin1II	CATG	5 cut(s)	28, 61, 73, 304, 424
Hin6I	GCGC	5 cut(s)	182, 200, 252, 309, 561
HinP1I	GCGC	5 cut(s)	182, 200, 252, 309, 561
HinfI	GANTC	2 cut(s)	28, 490
HpaII	CCGG	4 cut(s)	10, 185, 191, 508
HphI	GGTGA	1 cut(s)	79
Hpy166II	GTNNAC	1 cut(s)	442
Hpy188I	TCNGA	2 cut(s)	82, 495
Hpy188III	TCNNGA	4 cut(s)	34, 70, 433, 533
Hpy8I	GTNNAC	1 cut(s)	442
Hpy99I	CGWCG	2 cut(s)	295, 449
HpyAV	CCTTC	3 cut(s)	76, 103, 133
HpyCH4III	ACNGT	1 cut(s)	439
HpyCH4IV	ACGT	1 cut(s)	447
HpyCH4V	TGCA	2 cut(s)	226, 235
HpyF10VI	GCNNNNNNNGC	1 cut(s)	232
HpyF3I	CTNAG	1 cut(s)	320
HpySE526I	ACGT	1 cut(s)	447
Hsp92I	GRCGYC	3 cut(s)	200, 252, 309
Hsp92II	CATG	5 cut(s)	28, 61, 73, 304, 424
HspAI	GCGC	5 cut(s)	182, 200, 252, 309, 561
KasI	GGCGCC	3 cut(s)	199, 251, 308
KroI	GCCGGC	1 cut(s)	184
KroNI	GCCGGC	1 cut(s)	186
Kzo9I	GATC	3 cut(s)	82, 243, 504
LmnI	GCTCC	1 cut(s)	193
Lsp1109I	GCAGC	3 cut(s)	219, 238, 550
MaeI	CTAG	1 cut(s)	365
MaeII	ACGT	1 cut(s)	447
MalI	GATC	3 cut(s)	84, 245, 506
MboI	GATC	3 cut(s)	82, 243, 504
MboII	GAAGA	2 cut(s)	271, 366
MflI	RGATCY	1 cut(s)	504
MhlI	GDGCHC	3 cut(s)	321, 464, 474
Mly113I	GGCGCC	3 cut(s)	200, 252, 309
MnlI	CCTC	9 cut(s)	55, 61, 65, 100, 241, 322, 325, 345, 382
MroNI	GCCGGC	1 cut(s)	184
MspA1I	CMGCKG	1 cut(s)	229
MspI	CCGG	4 cut(s)	10, 185, 191, 508
MspR9I	CCNGG	2 cut(s)	212, 509
MvaI	CCWGG	1 cut(s)	212
MwoI	GCNNNNNNNGC	1 cut(s)	232
NaeI	GCCGGC	1 cut(s)	186
NarI	GGCGCC	3 cut(s)	200, 252, 309
NciI	CCSGG	1 cut(s)	509
NcoI	CCATGG	1 cut(s)	420
NdeII	GATC	3 cut(s)	82, 243, 504
NgoMIV	GCCGGC	1 cut(s)	184
NlaIII	CATG	5 cut(s)	28, 61, 73, 304, 424
NlaIV	GGNNCC	4 cut(s)	189, 201, 253, 310
NspI	RCATGY	1 cut(s)	304
PagI	TCATGA	1 cut(s)	69
PceI	AGGCCT	2 cut(s)	65, 239
PciI	ACATGT	1 cut(s)	300
PcsI	WCGNNNNNNNCGW	1 cut(s)	450
PdiI	GCCGGC	1 cut(s)	186
PfeI	GAWTC	2 cut(s)	28, 490
PflFI	GACNNNGTC	1 cut(s)	449
PflMI	CCANNNNNTGG	2 cut(s)	142, 282
PkrI	GCNGC	7 cut(s)	115, 228, 231, 234, 370, 560, 565
PluTI	GGCGCC	3 cut(s)	203, 255, 312
PscI	ACATGT	1 cut(s)	300
PsiI	TTATAA	1 cut(s)	554
Psp124BI	GAGCTC	1 cut(s)	474
Psp6I	CCWGG	1 cut(s)	210
PspFI	CCCAGC	1 cut(s)	105
PspGI	CCWGG	1 cut(s)	210
PspN4I	GGNNCC	4 cut(s)	189, 201, 253, 310
PspPI	GGNCC	2 cut(s)	99, 267
PstI	CTGCAG	1 cut(s)	237
PstNI	CAGNNNCTG	1 cut(s)	232
PsuI	RGATCY	1 cut(s)	504
PsyI	GACNNNGTC	1 cut(s)	449
SacI	GAGCTC	1 cut(s)	474
SatI	GCNGC	7 cut(s)	114, 227, 230, 233, 369, 559, 564
Sau3AI	GATC	3 cut(s)	82, 243, 504
Sau96I	GGNCC	2 cut(s)	99, 267
ScrFI	CCNGG	2 cut(s)	212, 509
SduI	GDGCHC	3 cut(s)	321, 464, 474
SetI	ASST	9 cut(s)	92, 266, 272, 366, 400, 405, 450, 474, 488
SfcI	CTRYAG	1 cut(s)	233
SfoI	GGCGCC	3 cut(s)	201, 253, 310
SinI	GGWCC	1 cut(s)	267
SseBI	AGGCCT	2 cut(s)	65, 239
SsiI	CCGC	7 cut(s)	111, 114, 166, 229, 369, 391, 558
SspDI	GGCGCC	3 cut(s)	199, 251, 308
SspMI	CTAG	1 cut(s)	365
SstI	GAGCTC	1 cut(s)	474
StuI	AGGCCT	2 cut(s)	65, 239
StyD4I	CCNGG	2 cut(s)	210, 507
StyI	CCWWGG	3 cut(s)	255, 394, 420
TaaI	ACNGT	1 cut(s)	439
TaiI	ACGT	1 cut(s)	450
TaqI	TCGA	4 cut(s)	246, 453, 464, 488
TauI	GCSGC	4 cut(s)	116, 232, 371, 561
TfiI	GAWTC	2 cut(s)	28, 490
TscAI	CASTG	1 cut(s)	444
TseI	GCWGC	3 cut(s)	226, 232, 563
TspDTI	ATGAA	4 cut(s)	41, 58, 170, 512
TspGWI	ACGGA	1 cut(s)	304
TspRI	CASTG	1 cut(s)	444
Tth111I	GACNNNGTC	1 cut(s)	449
Van91I	CCANNNNNTGG	2 cut(s)	142, 282
VpaK11BI	GGWCC	1 cut(s)	267
XagI	CCTNNNNNAGG	1 cut(s)	59
XceI	RCATGY	1 cut(s)	304
XspI	CTAG	1 cut(s)	365

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.