Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0003580

Physical Location & Seq

Genomic Coordinates Reverse (-)

19818042 .. 19818395

Gene Structure 354 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g25910.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 354 bp

ATGTCGGACTACCCCCGCCCCCCGGCGCAGGCGCCGACTCCGGTATCGGCGCAGTTCAACCAAGAGACCCTTATGCAGTGGCTACATGCCTTGATCGAGGGCGCCAGGGAGAGCTGGACCTACGCCATCTCCTGGCAGTCGTCGTACGACATGTCGGGCGCCTCCGTGCTCGGCTGGGGCGAGGGGTTCTACAAGGACGAGAGGGACAAAGTAAAAACGAAGCCCAAAACGACGACGTCTCTGGTCGAGCAAGAGTACCGCAAGAAAGTTCTCAGGGACTTGAACTCCTTGACTTCCGGCGCTGACACCTCCGTCGACGACGCCCTCGTCGATCAAGAGGTCACTTACACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005509 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006952 GO:0006970 GO:0006972 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009628 GO:0009651 GO:0009718 GO:0009719 GO:0009725 GO:0009753 GO:0009812 GO:0009813 GO:0009889 GO:0009891 GO:0009893 GO:0010033 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0042221 GO:0042440 GO:0042538 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043425 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0046148 GO:0046283 GO:0046872 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901576 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04016 ko04075 map04016 map04075

Pfam Domains

Protein Families

HLH bHLH-MYC_N

Protein Analysis

118

Amino Acids

13.2

Weight (kDa)

4.77

Isoelectric Point (pI)

36.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
bHLH-MYC_N	PF14215	25 - 115	2.6e-16	bHLH-MYC and R2R3-MYB transcription factors N-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003580)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G32640
fragaria_vesca	FvH4_1g13600 FvH4_1g13601 FvH4_4g17280 FvH4_5g22100 FvH4_6g24370 FvH4_6g25910
prunus_persica	Prupe.5G035400_v2.0.a1
pyrus_communis	pycom06g02850 pycom16g24430
rosa_chinensis	RchiOBHm_Chr7g0209751
rosa_laevigata	RLG00000003096 RLG00000008856 RLG00000036489 RLG00000036838
rosa_multiflora	Rmu_sc0000161.1_g000024 Rmu_sc0002616.1_g000020
rosa_roxburghii	Rroxscaffold_1G00006980
rosa_rugosa	Rorug05G0432900 Rorug07G0116000
rosa_samantha	Rh4DG124100 Rh5AG516700 Rh5AG518900 Rh5AG519400 Rh5BG540600 Rh5CG563400 Rh5DG551100 Rh5DG551400 Rh5DG551800 Rh7AG249600 Rh7BG243500 Rh7CG265600 Rh7DG255400
rosa_wichuraiana	Rw0G022750 Rw7G021160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	311, 326
AatII	GACGTC	1 cut(s)	239
AccB1I	GGYRCC	3 cut(s)	31, 101, 158
AccB7I	CCANNNNNTGG	1 cut(s)	132
AccI	GTMKAC	1 cut(s)	315
AciI	CCGC	2 cut(s)	16, 259
AcyI	GRCGYC	5 cut(s)	32, 102, 159, 236, 321
AfaI	GTAC	2 cut(s)	146, 257
AfiI	CCNNNNNNNGG	3 cut(s)	22, 28, 132
AflIII	ACRYGT	1 cut(s)	150
AgsI	TTSAA	2 cut(s)	58, 283
AjnI	CCWGG	2 cut(s)	104, 131
AluBI	AGCT	1 cut(s)	114
AluI	AGCT	1 cut(s)	114
Alw21I	GWGCWC	1 cut(s)	171
Alw26I	GTCTC	2 cut(s)	59, 243
AspLEI	GCGC	6 cut(s)	28, 34, 52, 104, 161, 302
AspS9I	GGNCC	1 cut(s)	117
AsuC2I	CCSGG	1 cut(s)	23
AvaII	GGWCC	1 cut(s)	117
BaeI	ACNNNNGTAYC	2 cut(s)	27, 60
BanI	GGYRCC	3 cut(s)	31, 101, 158
Bbv12I	GWGCWC	1 cut(s)	171
BccI	CCATC	1 cut(s)	134
BciT130I	CCWGG	2 cut(s)	106, 133
BcnI	CCSGG	1 cut(s)	23
BcoDI	GTCTC	2 cut(s)	59, 243
BfoI	RGCGCY	4 cut(s)	35, 105, 162, 303
Bme1390I	CCNGG	3 cut(s)	23, 106, 133
Bme18I	GGWCC	1 cut(s)	117
BmgT120I	GGNCC	1 cut(s)	117
BmiI	GGNNCC	3 cut(s)	33, 103, 160
BmrFI	CCNGG	3 cut(s)	23, 106, 133
BpuMI	CCSGG	1 cut(s)	23
BsaHI	GRCGYC	5 cut(s)	32, 102, 159, 236, 321
BsaI	GGTCTC	1 cut(s)	59
BsaJI	CCNNGG	2 cut(s)	21, 105
BsaWI	WCCGGW	1 cut(s)	40
BsaXI	ACNNNNNCTCC	4 cut(s)	113, 143, 269, 299
Bsc4I	CCNNNNNNNGG	3 cut(s)	22, 28, 132
BseBI	CCWGG	2 cut(s)	106, 133
BseDI	CCNNGG	2 cut(s)	21, 105
BseLI	CCNNNNNNNGG	3 cut(s)	22, 28, 132
BseMII	CTCAG	1 cut(s)	286
BseYI	CCCAGC	1 cut(s)	174
BshNI	GGYRCC	3 cut(s)	31, 101, 158
BsiHKAI	GWGCWC	1 cut(s)	171
BsiSI	CCGG	3 cut(s)	23, 41, 297
BsiWI	CGTACG	1 cut(s)	144
BslFI	GGGAC	2 cut(s)	218, 290
BslI	CCNNNNNNNGG	3 cut(s)	22, 28, 132
BsmAI	GTCTC	2 cut(s)	59, 243
BsmBI	CGTCTC	1 cut(s)	243
BsmFI	GGGAC	2 cut(s)	218, 290
Bso31I	GGTCTC	1 cut(s)	59
Bsp1286I	GDGCHC	1 cut(s)	171
Bsp143I	GATC	2 cut(s)	93, 331
BspACI	CCGC	2 cut(s)	16, 259
BspCNI	CTCAG	1 cut(s)	285
BspLI	GGNNCC	3 cut(s)	33, 103, 160
BspT107I	GGYRCC	3 cut(s)	31, 101, 158
BspTNI	GGTCTC	1 cut(s)	59
BssECI	CCNNGG	2 cut(s)	21, 105
BssMI	GATC	2 cut(s)	93, 331
BssNI	GRCGYC	5 cut(s)	32, 102, 159, 236, 321
Bst2UI	CCWGG	2 cut(s)	106, 133
BstACI	GRCGYC	5 cut(s)	32, 102, 159, 236, 321
BstC8I	GCNNGC	1 cut(s)	30
BstDEI	CTNAG	1 cut(s)	272
BstH2I	RGCGCY	4 cut(s)	35, 105, 162, 303
BstHHI	GCGC	6 cut(s)	28, 34, 52, 104, 161, 302
BstKTI	GATC	2 cut(s)	96, 334
BstMAI	GTCTC	2 cut(s)	59, 243
BstMBI	GATC	2 cut(s)	93, 331
BstNI	CCWGG	2 cut(s)	106, 133
BstNSI	RCATGY	2 cut(s)	89, 154
BstSCI	CCNGG	3 cut(s)	21, 104, 131
BtsI	GCAGTG	1 cut(s)	83
BtsIMutI	CAGTG	1 cut(s)	83
Cac8I	GCNNGC	1 cut(s)	30
CfoI	GCGC	6 cut(s)	28, 34, 52, 104, 161, 302
Cfr13I	GGNCC	1 cut(s)	117
CseI	GACGC	1 cut(s)	329
Csp6I	GTAC	2 cut(s)	145, 256
CviAII	CATG	2 cut(s)	86, 151
CviJI	RGCY	4 cut(s)	82, 114, 174, 223
CviKI_1	RGCY	4 cut(s)	82, 114, 174, 223
CviQI	GTAC	2 cut(s)	145, 256
DdeI	CTNAG	1 cut(s)	272
DinI	GGCGCC	3 cut(s)	33, 103, 160
DpnI	GATC	2 cut(s)	95, 333
DpnII	GATC	2 cut(s)	93, 331
DrdI	GACNNNNNNGTC	2 cut(s)	311, 326
DseDI	GACNNNNNNGTC	2 cut(s)	311, 326
Eco31I	GGTCTC	1 cut(s)	59
Eco47I	GGWCC	1 cut(s)	117
EcoRII	CCWGG	2 cut(s)	104, 131
EgeI	GGCGCC	3 cut(s)	33, 103, 160
EheI	GGCGCC	3 cut(s)	33, 103, 160
Esp3I	CGTCTC	1 cut(s)	243
FaeI	CATG	2 cut(s)	89, 154
FaiI	YATR	4 cut(s)	74, 87, 152, 352
FalI	AAGNNNNNCTT	2 cut(s)	54, 86
FaqI	GGGAC	2 cut(s)	218, 290
FatI	CATG	2 cut(s)	85, 150
FauI	CCCGC	1 cut(s)	23
FblI	GTMKAC	1 cut(s)	315
GlaI	GCGC	6 cut(s)	27, 33, 51, 103, 160, 301
GsaI	CCCAGC	1 cut(s)	178
HaeII	RGCGCY	4 cut(s)	35, 105, 162, 303
HapII	CCGG	3 cut(s)	23, 41, 297
HgaI	GACGC	1 cut(s)	329
HhaI	GCGC	6 cut(s)	28, 34, 52, 104, 161, 302
Hin1I	GRCGYC	5 cut(s)	32, 102, 159, 236, 321
Hin1II	CATG	2 cut(s)	89, 154
Hin6I	GCGC	6 cut(s)	26, 32, 50, 102, 159, 300
HinP1I	GCGC	6 cut(s)	26, 32, 50, 102, 159, 300
HincII	GTYRAC	1 cut(s)	316
HindII	GTYRAC	1 cut(s)	316
HinfI	GANTC	1 cut(s)	37
HpaII	CCGG	3 cut(s)	23, 41, 297
Hpy166II	GTNNAC	1 cut(s)	316
Hpy188I	TCNGA	1 cut(s)	7
Hpy188III	TCNNGA	1 cut(s)	335
Hpy8I	GTNNAC	1 cut(s)	316
Hpy99I	CGWCG	7 cut(s)	145, 235, 238, 317, 320, 323, 332
HpyCH4IV	ACGT	1 cut(s)	236
HpyCH4V	TGCA	1 cut(s)	76
HpyF3I	CTNAG	1 cut(s)	272
HpySE526I	ACGT	1 cut(s)	236
Hsp92I	GRCGYC	5 cut(s)	32, 102, 159, 236, 321
Hsp92II	CATG	2 cut(s)	89, 154
HspAI	GCGC	6 cut(s)	26, 32, 50, 102, 159, 300
KasI	GGCGCC	3 cut(s)	31, 101, 158
Kzo9I	GATC	2 cut(s)	93, 331
MaeII	ACGT	1 cut(s)	236
MaeIII	GTNAC	1 cut(s)	340
MalI	GATC	2 cut(s)	95, 333
MboI	GATC	2 cut(s)	93, 331
MhlI	GDGCHC	1 cut(s)	171
Mly113I	GGCGCC	3 cut(s)	32, 102, 159
MlyI	GAGTC	1 cut(s)	31
MnlI	CCTC	7 cut(s)	91, 172, 175, 195, 319, 331, 335
MspI	CCGG	3 cut(s)	23, 41, 297
MspR9I	CCNGG	3 cut(s)	23, 106, 133
MvaI	CCWGG	2 cut(s)	106, 133
NarI	GGCGCC	3 cut(s)	32, 102, 159
NciI	CCSGG	1 cut(s)	23
NdeII	GATC	2 cut(s)	93, 331
NlaIII	CATG	2 cut(s)	89, 154
NlaIV	GGNNCC	3 cut(s)	33, 103, 160
NmeAIII	GCCGAG	1 cut(s)	150
NmuCI	GTSAC	1 cut(s)	340
NspI	RCATGY	2 cut(s)	89, 154
PciI	ACATGT	1 cut(s)	150
PcsI	WCGNNNNNNNCGW	3 cut(s)	177, 324, 327
Pfl23II	CGTACG	1 cut(s)	144
PflFI	GACNNNGTC	1 cut(s)	235
PflMI	CCANNNNNTGG	1 cut(s)	132
PleI	GAGTC	1 cut(s)	31
PluTI	GGCGCC	3 cut(s)	35, 105, 162
PpsI	GAGTC	1 cut(s)	31
PscI	ACATGT	1 cut(s)	150
Psp6I	CCWGG	2 cut(s)	104, 131
PspFI	CCCAGC	1 cut(s)	174
PspGI	CCWGG	2 cut(s)	104, 131
PspLI	CGTACG	1 cut(s)	144
PspN4I	GGNNCC	3 cut(s)	33, 103, 160
PspPI	GGNCC	1 cut(s)	117
PsyI	GACNNNGTC	1 cut(s)	235
RsaI	GTAC	2 cut(s)	146, 257
RsaNI	GTAC	2 cut(s)	145, 256
SalI	GTCGAC	1 cut(s)	314
Sau3AI	GATC	2 cut(s)	93, 331
Sau96I	GGNCC	1 cut(s)	117
SchI	GAGTC	1 cut(s)	31
ScrFI	CCNGG	3 cut(s)	23, 106, 133
SduI	GDGCHC	1 cut(s)	171
SetI	ASST	5 cut(s)	116, 122, 239, 311, 342
SfoI	GGCGCC	3 cut(s)	33, 103, 160
SgrDI	CGTCGACG	1 cut(s)	314
SinI	GGWCC	1 cut(s)	117
SsiI	CCGC	2 cut(s)	16, 259
SspDI	GGCGCC	3 cut(s)	31, 101, 158
StyD4I	CCNGG	3 cut(s)	21, 104, 131
TaiI	ACGT	1 cut(s)	239
TaqI	TCGA	4 cut(s)	96, 246, 315, 330
TscAI	CASTG	1 cut(s)	83
TseFI	GTSAC	1 cut(s)	340
Tsp45I	GTSAC	1 cut(s)	340
TspGWI	ACGGA	2 cut(s)	154, 301
TspRI	CASTG	1 cut(s)	83
Tth111I	GACNNNGTC	1 cut(s)	235
Van91I	CCANNNNNTGG	1 cut(s)	132
VpaK11BI	GGWCC	1 cut(s)	117
XceI	RCATGY	2 cut(s)	89, 154
XmiI	GTMKAC	1 cut(s)	315
ZraI	GACGTC	1 cut(s)	237

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.