Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0003580

Physical Location & Seq

Genomic Coordinates Forward (+)

81219500 .. 81220635

Gene Structure 1136 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000036489

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

ATGAAAACGGCTGGTTATACAGAGGGCGTCGTGCGCCCAAGCGAGAGGGAGCTGCTGGTGGAGATAGGATGCCGGAGTGTTCGGTACGACGTGGAAGAAGAGATCGAGTCATATTGGAAGAAAGTGCTGAGAGACCTCAACTCATTGATTTCTGGGGCCGACACCACCGCTGAGGACGACGTCGTAGATCAGGAGGTCACTGATACAAAATGGTTCTTCCTTGTTTCCATGACCCAGAACTTTGTCAACGGCGGCGGGTTGCTGGGTCAGGCTTTTTTTTCATTCCGCCGCCTCATCGTGCGAGTGGGCCAGATAAGGTCAGGTGTTCATCCTATAGACTATGGTTTACGTCCCGACGACAAATGGGGTTATCGAAATGGGCTCGACGGAGCTCATATTCTAGAGCTCGAATCTGATGAACAAGGTCCGATTATTGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005509 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006952 GO:0006970 GO:0006972 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009628 GO:0009651 GO:0009718 GO:0009719 GO:0009725 GO:0009753 GO:0009812 GO:0009813 GO:0009889 GO:0009891 GO:0009893 GO:0010033 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0042221 GO:0042440 GO:0042538 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043425 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0046148 GO:0046283 GO:0046872 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901576 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04016 ko04075 map04016 map04075

Pfam Domains

Protein Families

HLH bHLH-MYC_N

Protein Analysis

147

Amino Acids

16.5

Weight (kDa)

4.69

Isoelectric Point (pI)

35.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
bHLH-MYC_N	PF14215	37 - 94	5.3e-10	bHLH-MYC and R2R3-MYB transcription factors N-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003580)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G32640
fragaria_vesca	FvH4_1g13600 FvH4_1g13601 FvH4_4g17280 FvH4_5g22100 FvH4_6g24370 FvH4_6g25910
prunus_persica	Prupe.5G035400_v2.0.a1
pyrus_communis	pycom06g02850 pycom16g24430
rosa_chinensis	RchiOBHm_Chr7g0209751
rosa_laevigata	RLG00000003096 RLG00000008856 RLG00000036489 RLG00000036838
rosa_multiflora	Rmu_sc0000161.1_g000024 Rmu_sc0002616.1_g000020
rosa_roxburghii	Rroxscaffold_1G00006980
rosa_rugosa	Rorug05G0432900 Rorug07G0116000
rosa_samantha	Rh4DG124100 Rh5AG516700 Rh5AG518900 Rh5AG519400 Rh5BG540600 Rh5CG563400 Rh5DG551100 Rh5DG551400 Rh5DG551800 Rh7AG249600 Rh7BG243500 Rh7CG265600 Rh7DG255400
rosa_wichuraiana	Rw0G022750 Rw7G021160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	183
AciI	CCGC	5 cut(s)	168, 252, 255, 286, 289
AcyI	GRCGYC	2 cut(s)	27, 180
AfaI	GTAC	1 cut(s)	86
AjiI	CACGTC	1 cut(s)	91
AluBI	AGCT	3 cut(s)	52, 392, 406
AluI	AGCT	3 cut(s)	52, 392, 406
Alw21I	GWGCWC	2 cut(s)	394, 408
Alw26I	GTCTC	1 cut(s)	126
AoxI	GGCC	2 cut(s)	156, 307
ApeKI	GCWGC	1 cut(s)	52
AspLEI	GCGC	1 cut(s)	36
AspS9I	GGNCC	3 cut(s)	156, 307, 425
AvaII	GGWCC	1 cut(s)	425
BanII	GRGCYC	3 cut(s)	384, 394, 408
Bbv12I	GWGCWC	2 cut(s)	394, 408
BbvCI	CCTCAGC	1 cut(s)	171
BbvI	GCAGC	1 cut(s)	39
BceAI	ACGGC	2 cut(s)	24, 265
BcoDI	GTCTC	1 cut(s)	126
BfaI	CTAG	1 cut(s)	401
BfmI	CTRYAG	1 cut(s)	333
BisI	GCNGC	3 cut(s)	53, 253, 289
BlsI	GCNGC	3 cut(s)	54, 254, 290
Bme18I	GGWCC	1 cut(s)	425
BmgBI	CACGTC	1 cut(s)	91
BmgT120I	GGNCC	3 cut(s)	156, 307, 425
BmiI	GGNNCC	1 cut(s)	157
BmsI	GCATC	1 cut(s)	59
Bpu10I	CCTNAGC	1 cut(s)	171
BsaHI	GRCGYC	2 cut(s)	27, 180
BsaI	GGTCTC	1 cut(s)	126
BseGI	GGATG	2 cut(s)	74, 328
BseMII	CTCAG	2 cut(s)	119, 162
BseXI	GCAGC	1 cut(s)	39
BseYI	CCCAGC	1 cut(s)	262
BshFI	GGCC	2 cut(s)	158, 309
BsiHKAI	GWGCWC	2 cut(s)	394, 408
BsiSI	CCGG	1 cut(s)	73
BslFI	GGGAC	1 cut(s)	336
BsmAI	GTCTC	1 cut(s)	126
BsmFI	GGGAC	1 cut(s)	336
BsnI	GGCC	2 cut(s)	158, 309
Bso31I	GGTCTC	1 cut(s)	126
Bsp1286I	GDGCHC	3 cut(s)	384, 394, 408
Bsp143I	GATC	2 cut(s)	102, 187
BspACI	CCGC	5 cut(s)	168, 252, 255, 286, 289
BspANI	GGCC	2 cut(s)	158, 309
BspCNI	CTCAG	2 cut(s)	120, 163
BspLI	GGNNCC	1 cut(s)	157
BspTNI	GGTCTC	1 cut(s)	126
BssMI	GATC	2 cut(s)	102, 187
BssNI	GRCGYC	2 cut(s)	27, 180
Bst6I	CTCTTC	1 cut(s)	93
BstACI	GRCGYC	2 cut(s)	27, 180
BstDEI	CTNAG	2 cut(s)	128, 171
BstF5I	GGATG	2 cut(s)	74, 328
BstHHI	GCGC	1 cut(s)	36
BstKTI	GATC	2 cut(s)	105, 190
BstMAI	GTCTC	1 cut(s)	126
BstMBI	GATC	2 cut(s)	102, 187
BstMWI	GCNNNNNNNGC	1 cut(s)	33
BstSFI	CTRYAG	1 cut(s)	333
BstV1I	GCAGC	1 cut(s)	39
BsuRI	GGCC	2 cut(s)	158, 309
BtrI	CACGTC	1 cut(s)	91
BtsCI	GGATG	2 cut(s)	74, 328
BtsIMutI	CAGTG	1 cut(s)	198
CfoI	GCGC	1 cut(s)	36
Cfr13I	GGNCC	3 cut(s)	156, 307, 425
CseI	GACGC	1 cut(s)	16
Csp6I	GTAC	1 cut(s)	85
CviAII	CATG	1 cut(s)	229
CviJI	RGCY	8 cut(s)	11, 52, 158, 272, 309, 382, 392, 406
CviKI_1	RGCY	8 cut(s)	11, 52, 158, 272, 309, 382, 392, 406
CviQI	GTAC	1 cut(s)	85
DdeI	CTNAG	2 cut(s)	128, 171
DpnI	GATC	2 cut(s)	104, 189
DpnII	GATC	2 cut(s)	102, 187
Eam1104I	CTCTTC	1 cut(s)	93
EarI	CTCTTC	1 cut(s)	93
EciI	GGCGGA	1 cut(s)	275
Ecl136II	GAGCTC	2 cut(s)	392, 406
Eco24I	GRGCYC	3 cut(s)	384, 394, 408
Eco31I	GGTCTC	1 cut(s)	126
Eco47I	GGWCC	1 cut(s)	425
Eco53kI	GAGCTC	2 cut(s)	392, 406
EcoICRI	GAGCTC	2 cut(s)	392, 406
EcoT38I	GRGCYC	3 cut(s)	384, 394, 408
FaeI	CATG	1 cut(s)	232
FaiI	YATR	6 cut(s)	18, 112, 230, 335, 342, 396
FaqI	GGGAC	1 cut(s)	336
FatI	CATG	1 cut(s)	228
FauI	CCCGC	1 cut(s)	248
Fnu4HI	GCNGC	3 cut(s)	53, 253, 289
FokI	GGATG	2 cut(s)	81, 315
FriOI	GRGCYC	3 cut(s)	384, 394, 408
Fsp4HI	GCNGC	3 cut(s)	53, 253, 289
FspBI	CTAG	1 cut(s)	401
GlaI	GCGC	1 cut(s)	35
GluI	GCNGC	3 cut(s)	53, 253, 289
GsaI	CCCAGC	1 cut(s)	266
HaeIII	GGCC	2 cut(s)	158, 309
HapII	CCGG	1 cut(s)	73
HgaI	GACGC	1 cut(s)	16
HhaI	GCGC	1 cut(s)	36
Hin1I	GRCGYC	2 cut(s)	27, 180
Hin1II	CATG	1 cut(s)	232
Hin6I	GCGC	1 cut(s)	34
HinP1I	GCGC	1 cut(s)	34
HincII	GTYRAC	1 cut(s)	247
HindII	GTYRAC	1 cut(s)	247
HinfI	GANTC	2 cut(s)	107, 410
HpaII	CCGG	1 cut(s)	73
Hpy166II	GTNNAC	2 cut(s)	247, 347
Hpy188I	TCNGA	2 cut(s)	415, 429
Hpy188III	TCNNGA	3 cut(s)	191, 353, 401
Hpy8I	GTNNAC	2 cut(s)	247, 347
Hpy99I	CGWCG	6 cut(s)	32, 92, 182, 185, 359, 389
HpyCH4IV	ACGT	3 cut(s)	90, 180, 349
HpyF10VI	GCNNNNNNNGC	1 cut(s)	33
HpyF3I	CTNAG	2 cut(s)	128, 171
HpySE526I	ACGT	3 cut(s)	90, 180, 349
Hsp92I	GRCGYC	2 cut(s)	27, 180
Hsp92II	CATG	1 cut(s)	232
HspAI	GCGC	1 cut(s)	34
Kzo9I	GATC	2 cut(s)	102, 187
LmnI	GCTCC	2 cut(s)	49, 389
LpnPI	CCDG	9 cut(s)	41, 86, 138, 176, 248, 248, 254, 306, 323
Lsp1109I	GCAGC	1 cut(s)	39
LweI	GCATC	1 cut(s)	59
MaeI	CTAG	1 cut(s)	401
MaeII	ACGT	3 cut(s)	90, 180, 349
MaeIII	GTNAC	1 cut(s)	196
MalI	GATC	2 cut(s)	104, 189
MboI	GATC	2 cut(s)	102, 187
MboII	GAAGA	4 cut(s)	107, 110, 130, 208
MhlI	GDGCHC	3 cut(s)	384, 394, 408
MlyI	GAGTC	1 cut(s)	116
MnlI	CCTC	6 cut(s)	16, 39, 146, 166, 187, 302
MseI	TTAA	1 cut(s)	439
MspA1I	CMGCKG	1 cut(s)	170
MspI	CCGG	1 cut(s)	73
MwoI	GCNNNNNNNGC	1 cut(s)	33
NdeII	GATC	2 cut(s)	102, 187
NlaIII	CATG	1 cut(s)	232
NlaIV	GGNNCC	1 cut(s)	157
NmuCI	GTSAC	1 cut(s)	196
PfeI	GAWTC	1 cut(s)	410
PflFI	GACNNNGTC	1 cut(s)	179
PkrI	GCNGC	3 cut(s)	54, 254, 290
PleI	GAGTC	1 cut(s)	115
PpsI	GAGTC	1 cut(s)	115
Psp124BI	GAGCTC	2 cut(s)	394, 408
PspFI	CCCAGC	1 cut(s)	262
PspN4I	GGNNCC	1 cut(s)	157
PspPI	GGNCC	3 cut(s)	156, 307, 425
PsyI	GACNNNGTC	1 cut(s)	179
RsaI	GTAC	1 cut(s)	86
RsaNI	GTAC	1 cut(s)	85
SacI	GAGCTC	2 cut(s)	394, 408
SaqAI	TTAA	1 cut(s)	439
SatI	GCNGC	3 cut(s)	53, 253, 289
Sau3AI	GATC	2 cut(s)	102, 187
Sau96I	GGNCC	3 cut(s)	156, 307, 425
SchI	GAGTC	1 cut(s)	116
SduI	GDGCHC	3 cut(s)	384, 394, 408
SfaNI	GCATC	1 cut(s)	59
SfcI	CTRYAG	1 cut(s)	333
SinI	GGWCC	1 cut(s)	425
SsiI	CCGC	5 cut(s)	168, 252, 255, 286, 289
SspMI	CTAG	1 cut(s)	401
SstI	GAGCTC	2 cut(s)	394, 408
TaiI	ACGT	3 cut(s)	93, 183, 352
TaqI	TCGA	4 cut(s)	105, 373, 384, 408
TauI	GCSGC	2 cut(s)	255, 291
TfiI	GAWTC	1 cut(s)	410
Tru1I	TTAA	1 cut(s)	439
Tru9I	TTAA	1 cut(s)	439
TscAI	CASTG	1 cut(s)	205
TseFI	GTSAC	1 cut(s)	196
TseI	GCWGC	1 cut(s)	52
Tsp45I	GTSAC	1 cut(s)	196
TspDTI	ATGAA	4 cut(s)	17, 270, 317, 432
TspGWI	ACGGA	1 cut(s)	402
TspRI	CASTG	1 cut(s)	205
Tth111I	GACNNNGTC	1 cut(s)	179
VpaK11BI	GGWCC	1 cut(s)	425
XbaI	TCTAGA	1 cut(s)	400
XspI	CTAG	1 cut(s)	401
ZraI	GACGTC	1 cut(s)	181

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.