Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000161.1

Orthogroup ID

OG0003580

Physical Location & Seq

Genomic Coordinates Forward (+)

114259 .. 115213

Gene Structure 955 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000161.1_g000024.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 675 bp

atggtccacctacatcaagttgaaatttggcgcttgactgacacgcgcgatgagcttgagggtggttatggcgtcgtgggcccaagcgagagggagcttctggtggagataggatgtcggagtgttcggtacgacgtggaagatgaaatcgaggcaatgaggccagaccgtctccccgcctcgccgtgcaagcaagccagacaaggtcaagtgttcggcctacaaactatggtctacatcccgaaggcgaatggggtcttcgaattgggctcaacggagctcatattccagagcttggatctgatgaacaaggtccaagtattgtttaattttaataaccttgaagtcggttcttggcctatgggtggcggcaccaatcaaggcgagaacgacccatcatcgatgtggatcaatgacaacttggccagcacaattgaagttgtcaaggagtcagtgaacatgggttcggcaacttcaggactcagatctcgaagccgattcaattcgataaccaccctggttccagtagcttatcagagaatccgagagccgttctccaagtacaatctcagagcaatcaccaccaccaagcccaatagcagcaagtacagatgcaaagcttcttcaccaggaagctcaacttctctgattacaatggttgggcggtggatgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005509 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006952 GO:0006970 GO:0006972 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009628 GO:0009651 GO:0009718 GO:0009719 GO:0009725 GO:0009753 GO:0009812 GO:0009813 GO:0009889 GO:0009891 GO:0009893 GO:0010033 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0042221 GO:0042440 GO:0042538 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043425 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0046148 GO:0046283 GO:0046872 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901576 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04016 ko04075 map04016 map04075

Pfam Domains

Protein Families

HLH bHLH-MYC_N

Protein Analysis

224

Amino Acids

25.0

Weight (kDa)

6.75

Isoelectric Point (pI)

46.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003580)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G32640
fragaria_vesca	FvH4_1g13600 FvH4_1g13601 FvH4_4g17280 FvH4_5g22100 FvH4_6g24370 FvH4_6g25910
prunus_persica	Prupe.5G035400_v2.0.a1
pyrus_communis	pycom06g02850 pycom16g24430
rosa_chinensis	RchiOBHm_Chr7g0209751
rosa_laevigata	RLG00000003096 RLG00000008856 RLG00000036489 RLG00000036838
rosa_multiflora	Rmu_sc0000161.1_g000024 Rmu_sc0002616.1_g000020
rosa_roxburghii	Rroxscaffold_1G00006980
rosa_rugosa	Rorug05G0432900 Rorug07G0116000
rosa_samantha	Rh4DG124100 Rh5AG516700 Rh5AG518900 Rh5AG519400 Rh5BG540600 Rh5CG563400 Rh5DG551100 Rh5DG551400 Rh5DG551800 Rh7AG249600 Rh7BG243500 Rh7CG265600 Rh7DG255400
rosa_wichuraiana	Rw0G022750 Rw7G021160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	371
AccB7I	CCANNNNNTGG	1 cut(s)	295
AccI	GTMKAC	1 cut(s)	234
AccII	CGCG	2 cut(s)	46, 48
AciI	CCGC	3 cut(s)	177, 369, 664
AclWI	GGATC	2 cut(s)	306, 416
AcoI	YGGCCR	1 cut(s)	423
AcsI	RAATTY	1 cut(s)	24
AcuI	CTGAAG	1 cut(s)	459
AcyI	GRCGYC	1 cut(s)	72
AfaI	GTAC	3 cut(s)	131, 563, 608
AfiI	CCNNNNNNNGG	2 cut(s)	295, 365
AgsI	TTSAA	4 cut(s)	23, 344, 437, 502
AjiI	CACGTC	1 cut(s)	136
AjnI	CCWGG	2 cut(s)	516, 628
AluBI	AGCT	7 cut(s)	55, 97, 280, 294, 530, 620, 636
AluI	AGCT	7 cut(s)	55, 97, 280, 294, 530, 620, 636
Alw21I	GWGCWC	1 cut(s)	282
Alw26I	GTCTC	1 cut(s)	176
AlwI	GGATC	2 cut(s)	306, 416
AoxI	GGCC	5 cut(s)	79, 161, 217, 356, 423
ApaI	GGGCCC	1 cut(s)	83
ApeKI	GCWGC	1 cut(s)	600
ApoI	RAATTY	1 cut(s)	24
AspLEI	GCGC	2 cut(s)	33, 48
AspS9I	GGNCC	4 cut(s)	4, 79, 80, 313
AsuHPI	GGTGA	2 cut(s)	571, 618
AsuII	TTCGAA	1 cut(s)	261
AvaII	GGWCC	2 cut(s)	4, 313
BaeGI	GKGCMC	1 cut(s)	83
BalI	TGGCCA	1 cut(s)	425
BanI	GGYRCC	1 cut(s)	371
BanII	GRGCYC	3 cut(s)	83, 272, 282
BbsI	GAAGAC	1 cut(s)	250
Bbv12I	GWGCWC	1 cut(s)	282
BbvI	GCAGC	1 cut(s)	612
BccI	CCATC	1 cut(s)	403
BceAI	ACGGC	2 cut(s)	169, 535
BciT130I	CCWGG	2 cut(s)	518, 630
BcoDI	GTCTC	1 cut(s)	176
BfoI	RGCGCY	1 cut(s)	34
BglII	AGATCT	1 cut(s)	485
BisI	GCNGC	2 cut(s)	370, 601
BlsI	GCNGC	2 cut(s)	371, 602
Bme1390I	CCNGG	2 cut(s)	518, 630
Bme18I	GGWCC	2 cut(s)	4, 313
BmgBI	CACGTC	1 cut(s)	136
BmgT120I	GGNCC	4 cut(s)	4, 79, 80, 313
BmiI	GGNNCC	3 cut(s)	81, 373, 522
BmrFI	CCNGG	2 cut(s)	518, 630
BmsI	GCATC	1 cut(s)	602
BpiI	GAAGAC	1 cut(s)	250
BplI	GAGNNNNNCTC	2 cut(s)	539, 571
Bpu14I	TTCGAA	1 cut(s)	261
BpuEI	CTTGAG	1 cut(s)	77
Bsa29I	ATCGAT	1 cut(s)	401
BsaBI	GATNNNNATC	1 cut(s)	407
BsaHI	GRCGYC	1 cut(s)	72
BsaJI	CCNNGG	1 cut(s)	516
Bsc4I	CCNNNNNNNGG	2 cut(s)	295, 365
Bse1I	ACTGG	1 cut(s)	524
Bse3DI	GCAATG	1 cut(s)	162
Bse8I	GATNNNNATC	1 cut(s)	407
BseBI	CCWGG	2 cut(s)	518, 630
BseCI	ATCGAT	1 cut(s)	401
BseDI	CCNNGG	1 cut(s)	516
BseGI	GGATG	3 cut(s)	119, 237, 675
BseJI	GATNNNNATC	1 cut(s)	407
BseLI	CCNNNNNNNGG	2 cut(s)	295, 365
BseMI	GCAATG	1 cut(s)	162
BseMII	CTCAG	2 cut(s)	496, 583
BseNI	ACTGG	1 cut(s)	524
BseSI	GKGCMC	1 cut(s)	83
BseXI	GCAGC	1 cut(s)	612
Bsh1236I	CGCG	2 cut(s)	46, 48
BshFI	GGCC	5 cut(s)	81, 163, 219, 358, 425
BshNI	GGYRCC	1 cut(s)	371
BshVI	ATCGAT	1 cut(s)	401
BsiHKAI	GWGCWC	1 cut(s)	282
BslI	CCNNNNNNNGG	2 cut(s)	295, 365
BsmAI	GTCTC	1 cut(s)	176
BsmBI	CGTCTC	1 cut(s)	176
BsnI	GGCC	5 cut(s)	81, 163, 219, 358, 425
Bsp119I	TTCGAA	1 cut(s)	261
Bsp120I	GGGCCC	1 cut(s)	79
Bsp1286I	GDGCHC	3 cut(s)	83, 272, 282
Bsp143I	GATC	3 cut(s)	298, 408, 485
BspACI	CCGC	3 cut(s)	177, 369, 664
BspANI	GGCC	5 cut(s)	81, 163, 219, 358, 425
BspCNI	CTCAG	2 cut(s)	495, 582
BspDI	ATCGAT	1 cut(s)	401
BspFNI	CGCG	2 cut(s)	46, 48
BspLI	GGNNCC	3 cut(s)	81, 373, 522
BspPI	GGATC	2 cut(s)	306, 416
BspT104I	TTCGAA	1 cut(s)	261
BspT107I	GGYRCC	1 cut(s)	371
BsrDI	GCAATG	1 cut(s)	162
BsrI	ACTGG	1 cut(s)	524
BssECI	CCNNGG	1 cut(s)	516
BssMI	GATC	3 cut(s)	298, 408, 485
BssNI	GRCGYC	1 cut(s)	72
Bst2UI	CCWGG	2 cut(s)	518, 630
Bst4CI	ACNGT	1 cut(s)	170
BstACI	GRCGYC	1 cut(s)	72
BstBI	TTCGAA	1 cut(s)	261
BstC8I	GCNNGC	3 cut(s)	191, 195, 427
BstDEI	CTNAG	2 cut(s)	482, 569
BstF5I	GGATG	3 cut(s)	119, 237, 675
BstFNI	CGCG	2 cut(s)	46, 48
BstH2I	RGCGCY	1 cut(s)	34
BstHHI	GCGC	2 cut(s)	33, 48
BstKTI	GATC	3 cut(s)	301, 411, 488
BstMAI	GTCTC	1 cut(s)	176
BstMBI	GATC	3 cut(s)	298, 408, 485
BstMWI	GCNNNNNNNGC	3 cut(s)	52, 78, 190
BstNI	CCWGG	2 cut(s)	518, 630
BstSCI	CCNGG	2 cut(s)	516, 628
BstSLI	GKGCMC	1 cut(s)	83
BstUI	CGCG	2 cut(s)	46, 48
BstV1I	GCAGC	1 cut(s)	612
BstV2I	GAAGAC	1 cut(s)	250
BstX2I	RGATCY	2 cut(s)	298, 485
BstYI	RGATCY	2 cut(s)	298, 485
Bsu15I	ATCGAT	1 cut(s)	401
BsuRI	GGCC	5 cut(s)	81, 163, 219, 358, 425
BsuTUI	ATCGAT	1 cut(s)	401
BtgZI	GCGATG	1 cut(s)	63
BtrI	CACGTC	1 cut(s)	136
BtsCI	GGATG	3 cut(s)	119, 237, 675
BtsIMutI	CAGTG	1 cut(s)	459
Cac8I	GCNNGC	3 cut(s)	191, 195, 427
CfoI	GCGC	2 cut(s)	33, 48
Cfr13I	GGNCC	4 cut(s)	4, 79, 80, 313
ClaI	ATCGAT	1 cut(s)	401
CseI	GACGC	1 cut(s)	61
Csp6I	GTAC	3 cut(s)	130, 562, 607
CviAII	CATG	1 cut(s)	460
CviQI	GTAC	3 cut(s)	130, 562, 607
DdeI	CTNAG	2 cut(s)	482, 569
DpnI	GATC	3 cut(s)	300, 410, 487
DpnII	GATC	3 cut(s)	298, 408, 485
EaeI	YGGCCR	1 cut(s)	423
Ecl136II	GAGCTC	1 cut(s)	280
Eco24I	GRGCYC	3 cut(s)	83, 272, 282
Eco47I	GGWCC	2 cut(s)	4, 313
Eco53kI	GAGCTC	1 cut(s)	280
Eco57I	CTGAAG	1 cut(s)	459
EcoICRI	GAGCTC	1 cut(s)	280
EcoRII	CCWGG	2 cut(s)	516, 628
EcoT38I	GRGCYC	3 cut(s)	83, 272, 282
Esp3I	CGTCTC	1 cut(s)	176
FaeI	CATG	1 cut(s)	463
FaiI	YATR	5 cut(s)	69, 230, 284, 362, 461
FalI	AAGNNNNNCTT	2 cut(s)	625, 657
FatI	CATG	1 cut(s)	459
FauI	CCCGC	1 cut(s)	184
FblI	GTMKAC	1 cut(s)	234
Fnu4HI	GCNGC	2 cut(s)	370, 601
FokI	GGATG	2 cut(s)	126, 224
FriOI	GRGCYC	3 cut(s)	83, 272, 282
Fsp4HI	GCNGC	2 cut(s)	370, 601
GlaI	GCGC	2 cut(s)	32, 47
GluI	GCNGC	2 cut(s)	370, 601
HaeII	RGCGCY	1 cut(s)	34
HaeIII	GGCC	5 cut(s)	81, 163, 219, 358, 425
HgaI	GACGC	1 cut(s)	61
HhaI	GCGC	2 cut(s)	33, 48
Hin1I	GRCGYC	1 cut(s)	72
Hin1II	CATG	1 cut(s)	463
Hin6I	GCGC	2 cut(s)	31, 46
HinP1I	GCGC	2 cut(s)	31, 46
HindIII	AAGCTT	1 cut(s)	618
HinfI	GANTC	4 cut(s)	449, 480, 498, 540
HphI	GGTGA	2 cut(s)	571, 618
Hpy166II	GTNNAC	3 cut(s)	7, 235, 457
Hpy188I	TCNGA	7 cut(s)	120, 303, 485, 537, 545, 572, 648
Hpy188III	TCNNGA	4 cut(s)	241, 289, 477, 489
Hpy8I	GTNNAC	3 cut(s)	7, 235, 457
Hpy99I	CGWCG	2 cut(s)	77, 137
HpyAV	CCTTC	1 cut(s)	238
HpyCH4III	ACNGT	1 cut(s)	170
HpyCH4IV	ACGT	1 cut(s)	135
HpyCH4V	TGCA	2 cut(s)	189, 615
HpyF10VI	GCNNNNNNNGC	3 cut(s)	52, 78, 190
HpyF3I	CTNAG	2 cut(s)	482, 569
HpySE526I	ACGT	1 cut(s)	135
Hsp92I	GRCGYC	1 cut(s)	72
Hsp92II	CATG	1 cut(s)	463
HspAI	GCGC	2 cut(s)	31, 46
Kzo9I	GATC	3 cut(s)	298, 408, 485
LmnI	GCTCC	2 cut(s)	94, 277
Lsp1109I	GCAGC	1 cut(s)	612
LweI	GCATC	1 cut(s)	602
MaeII	ACGT	1 cut(s)	135
MalI	GATC	3 cut(s)	300, 410, 487
MboI	GATC	3 cut(s)	298, 408, 485
MboII	GAAGA	3 cut(s)	152, 250, 615
MfeI	CAATTG	1 cut(s)	432
MflI	RGATCY	2 cut(s)	298, 485
MhlI	GDGCHC	3 cut(s)	83, 272, 282
MlsI	TGGCCA	1 cut(s)	425
MluCI	AATT	5 cut(s)	24, 263, 328, 432, 502
MluNI	TGGCCA	1 cut(s)	425
MlyI	GAGTC	2 cut(s)	458, 474
MmeI	TCCRAC	1 cut(s)	98
MnlI	CCTC	5 cut(s)	52, 84, 145, 153, 190
Mox20I	TGGCCA	1 cut(s)	425
MscI	TGGCCA	1 cut(s)	425
MseI	TTAA	2 cut(s)	327, 333
MslI	CAYNNNNRTG	1 cut(s)	403
Msp20I	TGGCCA	1 cut(s)	425
MspR9I	CCNGG	2 cut(s)	518, 630
MunI	CAATTG	1 cut(s)	432
MvaI	CCWGG	2 cut(s)	518, 630
MvnI	CGCG	2 cut(s)	46, 48
MwoI	GCNNNNNNNGC	3 cut(s)	52, 78, 190
NdeII	GATC	3 cut(s)	298, 408, 485
NlaIII	CATG	1 cut(s)	463
NlaIV	GGNNCC	3 cut(s)	81, 373, 522
NspV	TTCGAA	1 cut(s)	261
PfeI	GAWTC	2 cut(s)	498, 540
PflFI	GACNNNGTC	1 cut(s)	204
PflMI	CCANNNNNTGG	1 cut(s)	295
PkrI	GCNGC	2 cut(s)	371, 602
PleI	GAGTC	2 cut(s)	457, 474
PpsI	GAGTC	2 cut(s)	457, 474
Psp124BI	GAGCTC	1 cut(s)	282
Psp6I	CCWGG	2 cut(s)	516, 628
PspGI	CCWGG	2 cut(s)	516, 628
PspN4I	GGNNCC	3 cut(s)	81, 373, 522
PspOMI	GGGCCC	1 cut(s)	79
PspPI	GGNCC	4 cut(s)	4, 79, 80, 313
PsuI	RGATCY	2 cut(s)	298, 485
PsyI	GACNNNGTC	1 cut(s)	204
RsaI	GTAC	3 cut(s)	131, 563, 608
RsaNI	GTAC	3 cut(s)	130, 562, 607
RseI	CAYNNNNRTG	1 cut(s)	403
SacI	GAGCTC	1 cut(s)	282
SaqAI	TTAA	2 cut(s)	327, 333
SatI	GCNGC	2 cut(s)	370, 601
Sau3AI	GATC	3 cut(s)	298, 408, 485
Sau96I	GGNCC	4 cut(s)	4, 79, 80, 313
SchI	GAGTC	2 cut(s)	458, 474
ScrFI	CCNGG	2 cut(s)	518, 630
SduI	GDGCHC	3 cut(s)	83, 272, 282
SfaNI	GCATC	1 cut(s)	602
SfuI	TTCGAA	1 cut(s)	261
SinI	GGWCC	2 cut(s)	4, 313
SmiMI	CAYNNNNRTG	1 cut(s)	403
SmlI	CTYRAG	1 cut(s)	56
SmoI	CTYRAG	1 cut(s)	56
Sse9I	AATT	5 cut(s)	24, 263, 328, 432, 502
SsiI	CCGC	3 cut(s)	177, 369, 664
SstI	GAGCTC	1 cut(s)	282
StyD4I	CCNGG	2 cut(s)	516, 628
TaaI	ACNGT	1 cut(s)	170
TaiI	ACGT	1 cut(s)	138
TaqI	TCGA	5 cut(s)	150, 261, 401, 490, 506
TasI	AATT	5 cut(s)	24, 263, 328, 432, 502
TatI	WGTACW	2 cut(s)	561, 606
TauI	GCSGC	1 cut(s)	372
TfiI	GAWTC	2 cut(s)	498, 540
Tru1I	TTAA	2 cut(s)	327, 333
Tru9I	TTAA	2 cut(s)	327, 333
TscAI	CASTG	1 cut(s)	459
TseI	GCWGC	1 cut(s)	600
TspDTI	ATGAA	2 cut(s)	159, 320
TspGWI	ACGGA	1 cut(s)	290
TspRI	CASTG	1 cut(s)	459
Tth111I	GACNNNGTC	1 cut(s)	204
Van91I	CCANNNNNTGG	1 cut(s)	295
VpaK11BI	GGWCC	2 cut(s)	4, 313
XapI	RAATTY	1 cut(s)	24
XcmI	CCANNNNNNNNNTGG	1 cut(s)	402
XmiI	GTMKAC	1 cut(s)	234

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.