Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0003580

Physical Location & Seq

Genomic Coordinates Reverse (-)

26031695 .. 26035111

Gene Structure 3417 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG265600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2088 bp

ATGACGGACTACCGGATACCTCCCACCATGAATCTCTGGACGGACGACAACGCGTCTCTCATGGAAGCCTTCATGAGCAACTCCGATCTCACCTCCTTCTGGGCCGCCCAGCCGGCCCAGCCCGCAACCCAACCCGCACATCCCCTCCACCAGCCTCAGTCCTCCGCTTCCACCTCCGACTATCCCCGCCCTCCGGCGGCGCAGTCGCAGTCGCAGTCACAGCCTCCGCCTCCGCCGCCGCCGGCCGCGGCGCCGTTCAACCAGGAGACGCTTATGCAGCGGCTTCAGGCGCTGATCGACGGAGCCAGGGAGAGCTGGACCTACGCCATCTTCTGGCAGTCGTCGTACGAGATGTCCGGAGCTTCCGTGCTCGGATGGGGCGAGGGGTTCTACAAGGACGAGAGGGACAAGGTGAAAGCGAAGCCCAAAACGACGACGTCGTTGGTCGAGCAGGAGTACAGGAAGAAAGTGCTGAGAGACCTCAACTCTTTGATTTCCGGGGCCGACAACACCGCCGAGGACGACGTCGTGGATCAGGAAGTCACTGATACGGAATGGTTCTTCCTCGTTTCCATGACCCAGAACTTCGTCAACGGGGTCGGGTTGCCGGGTCAGGCTTTTTTTCAGTCCAACCCGGTCTGGGTCGCCGGGCCGGACCGCCTCGCCGACTCGCCGTGCGAGCGGGCCAGACAAGGTCAGGTGTTCGGCCTACAGACTATGGTCTGCGTCCCGACGGCGAATGGGGTCGTCGAGTTGGGCTCGACGGAGCTTATATACCAGAGCGCGGATCTGATGAACAAGGTCCGAGTGTTGTTTGATTTCAATAACCTTGAAGTCGGTTCTTGGCCCATGGGTGGCGCCGCCGATCAGGGAGAGAACGACCCGTCGTCGCTGTGGATCAACGACAACCCAGCCAGCACAATTGAAGTTGTCAAGGACTCAGTGCACATGGGTCCGGCGACTTCAGGACCCAGTACTAGTAACCATCAAATCTCGAAGCCGATTCAGTTCGACAGCCACCCTAGTTCGAGTGGCTTATCCGAGAATCCGAGCGCCGTTCTCCAAGTACAATCTCAGAGCAATCACCACCACCAAGCCCAGCAACAAGTACAGACGCAGAGCTTCTTCACCAGGGAGCTGAACTTCTCCGATTACAACGGCTACGACGGCAGCAGCGTCAAGAATTCGAATTCGAATTCTCATTCCTTGAAGCCGGAATCCGGCGAGATATTGAACTTCGGCGAGAGCAAGAGGACATCTTACAGTGCCAACAACGGGAAGTTGTTTTCGGCTCAATCCCAAATCGCCGCCGAAGACAACAACAAAAAGAAGAGATCGCCGCCGTCGAGGGGCAGCAACGACGAGGGGATCCTGTCGTTTAGTTCGGGAGTGATTCTACCGTCGAGCAGCGGCGTCGTGAAATCGAGCGCCGGCCCAGTAGATTCCGACCACTCCGACCTCGAAGCCTCCGTGGCTAGGGAGGCCGACAGTAGCAGAGTTGTGGACCCGGAAAAACGACCCCGGAAAAGAGGTCGTAAACCGGCGAACGGCAGAGAGGAGCCGCTGAACCACGTGGAGGCGGAGAGACAGAGAAGAGAGAAGCTCAACCAGAGATTCTATGCTCTCCGAGCTGTCGTCCCAAATGTTTCGAAAATGGACAAGGCATCTCTGCTTGGAGACGCCATCTCTTACATCACCGAGCTCAAGACGAAGCTGCAAACGACGGAGTCCGACAAGGAGGACCTCCACAAGCAAGTGGAGACGTTAAGTAAAGAGCTACAAGAGTCCCGAACGTCTTCGGGTTTGGACCAAGAGCTTAAAGGGTCTAATAAGTTGATCGATTTGGATATTGATGTGAAGATACTCGGATGGGACGCTAGGATTCAAATTCAATGTAGCAAGAAGAACCACCCTGCCGCGAGACTAATGGCGGCGCTGATGGAGCTGGACTTGGATGTACACCATGCCAGCGTCTCGGTAGTCAATGATTTGATGATCCAGCAAGCCACGGTGAGGATGGGCAGCCGGATTTACACGCAGGAGCAGCTCAGGTTAGCTCTATCAGCCAAAGTGGGGGATGCCAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005509 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006952 GO:0006970 GO:0006972 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009628 GO:0009651 GO:0009718 GO:0009719 GO:0009725 GO:0009753 GO:0009812 GO:0009813 GO:0009889 GO:0009891 GO:0009893 GO:0010033 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0042221 GO:0042440 GO:0042538 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043425 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0046148 GO:0046283 GO:0046872 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901576 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04016 ko04075 map04016 map04075

Pfam Domains

Protein Families

HLH bHLH-MYC_N

Protein Analysis

695

Amino Acids

76.38

Weight (kDa)

5.45

Isoelectric Point (pI)

48.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
bHLH-MYC_N	PF14215	91 - 272	1.8e-54	bHLH-MYC and R2R3-MYB transcription factors N-terminal
HLH	PF00010	523 - 569	1e-11	Helix-loop-helix DNA-binding domain
bHLH-TF_ACT-like_plant	PF22754	617 - 687	4e-07	Plant bHLH transcription factor, ACT-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003580)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G32640
fragaria_vesca	FvH4_1g13600 FvH4_1g13601 FvH4_4g17280 FvH4_5g22100 FvH4_6g24370 FvH4_6g25910
prunus_persica	Prupe.5G035400_v2.0.a1
pyrus_communis	pycom06g02850 pycom16g24430
rosa_chinensis	RchiOBHm_Chr7g0209751
rosa_laevigata	RLG00000003096 RLG00000008856 RLG00000036489 RLG00000036838
rosa_multiflora	Rmu_sc0000161.1_g000024 Rmu_sc0002616.1_g000020
rosa_roxburghii	Rroxscaffold_1G00006980
rosa_rugosa	Rorug05G0432900 Rorug07G0116000
rosa_samantha	Rh4DG124100 Rh5AG516700 Rh5AG518900 Rh5AG519400 Rh5BG540600 Rh5CG563400 Rh5DG551100 Rh5DG551400 Rh5DG551800 Rh7AG249600 Rh7BG243500 Rh7CG265600 Rh7DG255400
rosa_wichuraiana	Rw0G022750 Rw7G021160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	2 cut(s)	440, 528
AccB1I	GGYRCC	2 cut(s)	250, 857
AccB7I	CCANNNNNTGG	1 cut(s)	333
AccBSI	CCGCTC	1 cut(s)	682
AccII	CGCG	4 cut(s)	53, 248, 785, 1919
AccIII	TCCGGA	1 cut(s)	356
AclWI	GGATC	6 cut(s)	540, 795, 905, 1363, 1376, 1990
AcoI	YGGCCR	1 cut(s)	243
AcsI	RAATTY	4 cut(s)	1183, 1189, 1195, 1887
AcuI	CTGAAG	2 cut(s)	269, 948
AcvI	CACGTG	1 cut(s)	1573
AcyI	GRCGYC	6 cut(s)	251, 437, 525, 858, 1413, 1680
AfaI	GTAC	6 cut(s)	347, 458, 976, 1068, 1110, 1959
AflIII	ACRYGT	1 cut(s)	51
AgsI	TTSAA	8 cut(s)	259, 823, 833, 926, 1210, 1234, 1886, 1892
AhdI	GACNNNNNGTC	2 cut(s)	52, 886
AhlI	ACTAGT	1 cut(s)	977
AjnI	CCWGG	3 cut(s)	261, 305, 1130
Alw21I	GWGCWC	3 cut(s)	372, 948, 1704
Alw26I	GTCTC	8 cut(s)	60, 260, 471, 1579, 1671, 1754, 1915, 1978
Alw44I	GTGCAC	1 cut(s)	944
AlwI	GGATC	6 cut(s)	540, 795, 905, 1363, 1376, 1990
AlwNI	CAGNNNCTG	1 cut(s)	292
Aor13HI	TCCGGA	1 cut(s)	356
ApaLI	GTGCAC	1 cut(s)	944
ApeKI	GCWGC	8 cut(s)	277, 1170, 1173, 1353, 1407, 1714, 2022, 2044
ApoI	RAATTY	4 cut(s)	1183, 1189, 1195, 1887
Asp700I	GAANNNNTTC	1 cut(s)	1795
AspLEI	GCGC	8 cut(s)	202, 253, 292, 785, 860, 1055, 1430, 1936
AsuC2I	CCSGG	6 cut(s)	499, 609, 635, 649, 1508, 1522
AsuHPI	GGTGA	6 cut(s)	82, 424, 1076, 1120, 1687, 2023
AsuII	TTCGAA	3 cut(s)	1187, 1193, 1649
AvaII	GGWCC	8 cut(s)	318, 655, 802, 953, 968, 1504, 1741, 1807
BaeGI	GKGCMC	1 cut(s)	948
BamHI	GGATCC	1 cut(s)	1368
BanI	GGYRCC	2 cut(s)	250, 857
BanII	GRGCYC	2 cut(s)	761, 1704
BbrPI	CACGTG	1 cut(s)	1573
BbsI	GAAGAC	2 cut(s)	1320, 1788
Bbv12I	GWGCWC	3 cut(s)	372, 948, 1704
BbvI	GCAGC	8 cut(s)	289, 1182, 1185, 1365, 1419, 1701, 2034, 2056
BccI	CCATC	7 cut(s)	335, 369, 993, 1691, 1863, 1933, 2011
BceAI	ACGGC	8 cut(s)	238, 658, 750, 1040, 1174, 1183, 1327, 1564
BcgI	CGANNNNNNTGC	2 cut(s)	1396, 1430
BciT130I	CCWGG	3 cut(s)	263, 307, 1132
BciVI	GTATCC	1 cut(s)	9
BcnI	CCSGG	6 cut(s)	499, 609, 635, 649, 1508, 1522
BcoDI	GTCTC	8 cut(s)	60, 260, 471, 1579, 1671, 1754, 1915, 1978
BcuI	ACTAGT	1 cut(s)	977
BfaI	CTAG	4 cut(s)	978, 1023, 1476, 1878
BfmI	CTRYAG	1 cut(s)	710
BfoI	RGCGCY	6 cut(s)	254, 293, 861, 1056, 1431, 1937
BfuI	GTATCC	1 cut(s)	9
BglI	GCCNNNNNGGC	2 cut(s)	113, 1472
BmcAI	AGTACT	1 cut(s)	976
Bme1390I	CCNGG	9 cut(s)	263, 307, 499, 609, 635, 649, 1132, 1508, 1522
Bme18I	GGWCC	8 cut(s)	318, 655, 802, 953, 968, 1504, 1741, 1807
BmeRI	GACNNNNNGTC	2 cut(s)	52, 886
BmiI	GGNNCC	9 cut(s)	252, 304, 502, 859, 954, 970, 1370, 1506, 1560
BmrFI	CCNGG	9 cut(s)	263, 307, 499, 609, 635, 649, 1132, 1508, 1522
BmrI	ACTGGG	2 cut(s)	966, 1430
BmsI	GCATC	2 cut(s)	1673, 2068
BmuI	ACTGGG	2 cut(s)	966, 1430
BoxI	GACNNNNGTC	1 cut(s)	719
BpiI	GAAGAC	2 cut(s)	1320, 1788
BplI	GAGNNNNNCTC	4 cut(s)	743, 775, 1587, 1619
Bpu10I	CCTNAGC	1 cut(s)	2048
Bpu14I	TTCGAA	3 cut(s)	1187, 1193, 1649
BpuEI	CTTGAG	1 cut(s)	1688
BpuMI	CCSGG	6 cut(s)	499, 609, 635, 649, 1508, 1522
Bsa29I	ATCGAT	1 cut(s)	1839
BsaAI	YACGTR	1 cut(s)	1573
BsaHI	GRCGYC	6 cut(s)	251, 437, 525, 858, 1413, 1680
BsaI	GGTCTC	1 cut(s)	471
BsaJI	CCNNGG	9 cut(s)	246, 306, 498, 516, 849, 1131, 1470, 1520, 2007
BsaWI	WCCGGW	2 cut(s)	12, 356
BsaXI	ACNNNNNCTCC	4 cut(s)	129, 159, 351, 381
Bse118I	RCCGGY	4 cut(s)	112, 241, 1430, 1540
Bse1I	ACTGG	2 cut(s)	972, 1436
BseAI	TCCGGA	1 cut(s)	356
BseBI	CCWGG	3 cut(s)	263, 307, 1132
BseCI	ATCGAT	1 cut(s)	1839
BseDI	CCNNGG	9 cut(s)	246, 306, 498, 516, 849, 1131, 1470, 1520, 2007
BseGI	GGATG	6 cut(s)	139, 380, 1874, 1960, 2022, 2083
BseMII	CTCAG	5 cut(s)	170, 464, 954, 1088, 2062
BseNI	ACTGG	2 cut(s)	972, 1436
BseRI	GAGGAG	1 cut(s)	1571
BseSI	GKGCMC	1 cut(s)	948
BseX3I	CGGCCG	1 cut(s)	243
BseXI	GCAGC	8 cut(s)	289, 1182, 1185, 1365, 1419, 1701, 2034, 2056
BseYI	CCCAGC	4 cut(s)	108, 117, 910, 1098
Bsh1236I	CGCG	4 cut(s)	53, 248, 785, 1919
Bsh1285I	CGRYCG	1 cut(s)	246
BshNI	GGYRCC	2 cut(s)	250, 857
BshVI	ATCGAT	1 cut(s)	1839
BsiEI	CGRYCG	1 cut(s)	246
BsiHKAI	GWGCWC	3 cut(s)	372, 948, 1704
BsiWI	CGTACG	1 cut(s)	345
BslFI	GGGAC	5 cut(s)	419, 713, 1622, 1771, 1886
BsmAI	GTCTC	8 cut(s)	60, 260, 471, 1579, 1671, 1754, 1915, 1978
BsmBI	CGTCTC	5 cut(s)	60, 260, 1671, 1754, 1978
BsmFI	GGGAC	5 cut(s)	419, 713, 1622, 1771, 1886
Bso31I	GGTCTC	1 cut(s)	471
Bsp119I	TTCGAA	3 cut(s)	1187, 1193, 1649
Bsp1286I	GDGCHC	4 cut(s)	372, 761, 948, 1704
Bsp13I	TCCGGA	1 cut(s)	356
Bsp1407I	TGTACA	1 cut(s)	1957
Bsp19I	CCATGG	1 cut(s)	849
BspCNI	CTCAG	5 cut(s)	169, 465, 953, 1087, 2061
BspDI	ATCGAT	1 cut(s)	1839
BspEI	TCCGGA	1 cut(s)	356
BspFNI	CGCG	4 cut(s)	53, 248, 785, 1919
BspHI	TCATGA	1 cut(s)	72
BspLI	GGNNCC	9 cut(s)	252, 304, 502, 859, 954, 970, 1370, 1506, 1560
BspPI	GGATC	6 cut(s)	540, 795, 905, 1363, 1376, 1990
BspT104I	TTCGAA	3 cut(s)	1187, 1193, 1649
BspT107I	GGYRCC	2 cut(s)	250, 857
BspTNI	GGTCTC	1 cut(s)	471
BsrBI	CCGCTC	1 cut(s)	682
BsrFI	RCCGGY	4 cut(s)	112, 241, 1430, 1540
BsrGI	TGTACA	1 cut(s)	1957
BsrI	ACTGG	2 cut(s)	972, 1436
BssAI	RCCGGY	4 cut(s)	112, 241, 1430, 1540
BssECI	CCNNGG	9 cut(s)	246, 306, 498, 516, 849, 1131, 1470, 1520, 2007
BssNI	GRCGYC	6 cut(s)	251, 437, 525, 858, 1413, 1680
BssT1I	CCWWGG	1 cut(s)	849
Bst2UI	CCWGG	3 cut(s)	263, 307, 1132
Bst4CI	ACNGT	4 cut(s)	1265, 1401, 1490, 2011
Bst6I	CTCTTC	2 cut(s)	1325, 1588
BstACI	GRCGYC	6 cut(s)	251, 437, 525, 858, 1413, 1680
BstAUI	TGTACA	1 cut(s)	1957
BstBAI	YACGTR	1 cut(s)	1573
BstBI	TTCGAA	3 cut(s)	1187, 1193, 1649
BstC8I	GCNNGC	9 cut(s)	114, 123, 243, 680, 684, 916, 1432, 1969, 2004
BstDEI	CTNAG	5 cut(s)	156, 473, 940, 1074, 2048
BstDSI	CCRYGG	4 cut(s)	246, 849, 1470, 2007
BstF5I	GGATG	6 cut(s)	139, 380, 1874, 1960, 2022, 2083
BstFNI	CGCG	4 cut(s)	53, 248, 785, 1919
BstH2I	RGCGCY	6 cut(s)	254, 293, 861, 1056, 1431, 1937
BstHHI	GCGC	8 cut(s)	202, 253, 292, 785, 860, 1055, 1430, 1936
BstMAI	GTCTC	8 cut(s)	60, 260, 471, 1579, 1671, 1754, 1915, 1978
BstMCI	CGRYCG	1 cut(s)	246
BstNI	CCWGG	3 cut(s)	263, 307, 1132
BstPAI	GACNNNNGTC	1 cut(s)	719
BstSCI	CCNGG	9 cut(s)	261, 305, 497, 607, 633, 647, 1130, 1506, 1520
BstSFI	CTRYAG	1 cut(s)	710
BstSLI	GKGCMC	1 cut(s)	948
BstUI	CGCG	4 cut(s)	53, 248, 785, 1919
BstV1I	GCAGC	8 cut(s)	289, 1182, 1185, 1365, 1419, 1701, 2034, 2056
BstV2I	GAAGAC	2 cut(s)	1320, 1788
BstX2I	RGATCY	2 cut(s)	787, 1368
BstYI	RGATCY	2 cut(s)	787, 1368
BstZI	CGGCCG	1 cut(s)	243
Bsu15I	ATCGAT	1 cut(s)	1839
BsuI	GTATCC	1 cut(s)	9
BsuTUI	ATCGAT	1 cut(s)	1839
BtgI	CCRYGG	4 cut(s)	246, 849, 1470, 2007
BtsCI	GGATG	6 cut(s)	139, 380, 1874, 1960, 2022, 2083
BtsIMutI	CAGTG	3 cut(s)	543, 948, 1270
Cac8I	GCNNGC	9 cut(s)	114, 123, 243, 680, 684, 916, 1432, 1969, 2004
CaiI	CAGNNNCTG	1 cut(s)	292
CciI	TCATGA	1 cut(s)	72
CfoI	GCGC	8 cut(s)	202, 253, 292, 785, 860, 1055, 1430, 1936
Cfr10I	RCCGGY	4 cut(s)	112, 241, 1430, 1540
Cfr42I	CCGCGG	1 cut(s)	249
ClaI	ATCGAT	1 cut(s)	1839
CpoI	CGGWCCG	1 cut(s)	655
CseI	GACGC	9 cut(s)	42, 277, 715, 1123, 1165, 1402, 1688, 1883, 1960
Csp6I	GTAC	6 cut(s)	346, 457, 975, 1067, 1109, 1958
CspI	CGGWCCG	1 cut(s)	655
CviAII	CATG	7 cut(s)	28, 61, 73, 574, 850, 949, 1964
CviQI	GTAC	6 cut(s)	346, 457, 975, 1067, 1109, 1958
DdeI	CTNAG	5 cut(s)	156, 473, 940, 1074, 2048
DinI	GGCGCC	2 cut(s)	252, 859
DriI	GACNNNNNGTC	2 cut(s)	52, 886
EaeI	YGGCCR	1 cut(s)	243
EagI	CGGCCG	1 cut(s)	243
Eam1104I	CTCTTC	2 cut(s)	1325, 1588
Eam1105I	GACNNNNNGTC	2 cut(s)	52, 886
EarI	CTCTTC	2 cut(s)	1325, 1588
EciI	GGCGGA	3 cut(s)	216, 222, 1595
Ecl136II	GAGCTC	1 cut(s)	1702
EclXI	CGGCCG	1 cut(s)	243
Eco130I	CCWWGG	1 cut(s)	849
Eco24I	GRGCYC	2 cut(s)	761, 1704
Eco31I	GGTCTC	1 cut(s)	471
Eco47I	GGWCC	8 cut(s)	318, 655, 802, 953, 968, 1504, 1741, 1807
Eco52I	CGGCCG	1 cut(s)	243
Eco53kI	GAGCTC	1 cut(s)	1702
Eco57I	CTGAAG	2 cut(s)	269, 948
Eco72I	CACGTG	1 cut(s)	1573
EcoICRI	GAGCTC	1 cut(s)	1702
EcoO109I	RGGNCCY	2 cut(s)	968, 1741
EcoRI	GAATTC	3 cut(s)	1183, 1189, 1195
EcoRII	CCWGG	3 cut(s)	261, 305, 1130
EcoT14I	CCWWGG	1 cut(s)	849
EcoT38I	GRGCYC	2 cut(s)	761, 1704
EgeI	GGCGCC	2 cut(s)	252, 859
EheI	GGCGCC	2 cut(s)	252, 859
ErhI	CCWWGG	1 cut(s)	849
Esp3I	CGTCTC	5 cut(s)	60, 260, 1671, 1754, 1978
FaeI	CATG	7 cut(s)	31, 64, 76, 577, 853, 952, 1967
FaqI	GGGAC	5 cut(s)	419, 713, 1622, 1771, 1886
FatI	CATG	7 cut(s)	27, 60, 72, 573, 849, 948, 1963
FauI	CCCGC	4 cut(s)	130, 142, 194, 675
FokI	GGATG	5 cut(s)	126, 387, 1881, 1967, 2029
FriOI	GRGCYC	2 cut(s)	761, 1704
FspBI	CTAG	4 cut(s)	978, 1023, 1476, 1878
GlaI	GCGC	8 cut(s)	201, 252, 291, 784, 859, 1054, 1429, 1935
GsaI	CCCAGC	4 cut(s)	112, 121, 914, 1102
HaeII	RGCGCY	6 cut(s)	254, 293, 861, 1056, 1431, 1937
HgaI	GACGC	9 cut(s)	42, 277, 715, 1123, 1165, 1402, 1688, 1883, 1960
HhaI	GCGC	8 cut(s)	202, 253, 292, 785, 860, 1055, 1430, 1936
Hin1I	GRCGYC	6 cut(s)	251, 437, 525, 858, 1413, 1680
Hin1II	CATG	7 cut(s)	31, 64, 76, 577, 853, 952, 1967
Hin6I	GCGC	8 cut(s)	200, 251, 290, 783, 858, 1053, 1428, 1934
HinP1I	GCGC	8 cut(s)	200, 251, 290, 783, 858, 1053, 1428, 1934
HincII	GTYRAC	1 cut(s)	592
HindII	GTYRAC	1 cut(s)	592
HphI	GGTGA	6 cut(s)	82, 424, 1076, 1120, 1687, 2023
Hpy166II	GTNNAC	5 cut(s)	592, 946, 1504, 1538, 1960
Hpy8I	GTNNAC	5 cut(s)	592, 946, 1504, 1538, 1960
HpyAV	CCTTC	2 cut(s)	79, 106
HpyCH4III	ACNGT	4 cut(s)	1265, 1401, 1490, 2011
HpyCH4IV	ACGT	5 cut(s)	437, 525, 1572, 1763, 1793
HpyCH4V	TGCA	3 cut(s)	277, 946, 1717
HpyF3I	CTNAG	5 cut(s)	156, 473, 940, 1074, 2048
HpySE526I	ACGT	5 cut(s)	437, 525, 1572, 1763, 1793
Hsp92I	GRCGYC	6 cut(s)	251, 437, 525, 858, 1413, 1680
Hsp92II	CATG	7 cut(s)	31, 64, 76, 577, 853, 952, 1967
HspAI	GCGC	8 cut(s)	200, 251, 290, 783, 858, 1053, 1428, 1934
KasI	GGCGCC	2 cut(s)	250, 857
Kpn2I	TCCGGA	1 cut(s)	356
KroI	GCCGGC	3 cut(s)	112, 241, 1430
KroNI	GCCGGC	3 cut(s)	114, 243, 1432
KspI	CCGCGG	1 cut(s)	249
LmnI	GCTCC	7 cut(s)	302, 359, 766, 1135, 1558, 1942, 2041
Lsp1109I	GCAGC	8 cut(s)	289, 1182, 1185, 1365, 1419, 1701, 2034, 2056
LweI	GCATC	2 cut(s)	1673, 2068
MaeI	CTAG	4 cut(s)	978, 1023, 1476, 1878
MaeII	ACGT	5 cut(s)	437, 525, 1572, 1763, 1793
MaeIII	GTNAC	3 cut(s)	216, 541, 980
MbiI	CCGCTC	1 cut(s)	682
MfeI	CAATTG	1 cut(s)	921
MflI	RGATCY	2 cut(s)	787, 1368
MhlI	GDGCHC	4 cut(s)	372, 761, 948, 1704
MluCI	AATT	5 cut(s)	921, 1183, 1189, 1195, 1887
MluI	ACGCGT	1 cut(s)	51
Mly113I	GGCGCC	2 cut(s)	251, 858
MlyI	GAGTC	4 cut(s)	662, 932, 1736, 1793
MmeI	TCCRAC	5 cut(s)	201, 654, 1470, 1479, 1755
MroI	TCCGGA	1 cut(s)	356
MroNI	GCCGGC	3 cut(s)	112, 241, 1430
MroXI	GAANNNNTTC	1 cut(s)	1795
MseI	TTAA	2 cut(s)	1766, 1818
MspA1I	CMGCKG	4 cut(s)	248, 280, 1410, 1564
MspR9I	CCNGG	9 cut(s)	263, 307, 499, 609, 635, 649, 1132, 1508, 1522
MunI	CAATTG	1 cut(s)	921
MvaI	CCWGG	3 cut(s)	263, 307, 1132
MvnI	CGCG	4 cut(s)	53, 248, 785, 1919
NaeI	GCCGGC	3 cut(s)	114, 243, 1432
NarI	GGCGCC	2 cut(s)	251, 858
NciI	CCSGG	6 cut(s)	499, 609, 635, 649, 1508, 1522
NcoI	CCATGG	1 cut(s)	849
NgoMIV	GCCGGC	3 cut(s)	112, 241, 1430
NlaIII	CATG	7 cut(s)	31, 64, 76, 577, 853, 952, 1967
NlaIV	GGNNCC	9 cut(s)	252, 304, 502, 859, 954, 970, 1370, 1506, 1560
NmeAIII	GCCGAG	1 cut(s)	541
NmuCI	GTSAC	2 cut(s)	216, 541
NspV	TTCGAA	3 cut(s)	1187, 1193, 1649
PagI	TCATGA	1 cut(s)	72
PcsI	WCGNNNNNNNCGW	5 cut(s)	378, 437, 1173, 1343, 1467
PdiI	GCCGGC	3 cut(s)	114, 243, 1432
PdmI	GAANNNNTTC	1 cut(s)	1795
PfeI	GAWTC	8 cut(s)	31, 1003, 1045, 1217, 1393, 1442, 1614, 1882
Pfl23II	CGTACG	1 cut(s)	345
PflFI	GACNNNGTC	4 cut(s)	436, 524, 693, 1726
PflMI	CCANNNNNTGG	1 cut(s)	333
PleI	GAGTC	4 cut(s)	662, 932, 1735, 1792
PluTI	GGCGCC	2 cut(s)	254, 861
PmaCI	CACGTG	1 cut(s)	1573
PmlI	CACGTG	1 cut(s)	1573
PpsI	GAGTC	4 cut(s)	662, 932, 1735, 1792
Ppu21I	YACGTR	1 cut(s)	1573
PpuMI	RGGWCCY	2 cut(s)	968, 1741
PshAI	GACNNNNGTC	1 cut(s)	719
Psp124BI	GAGCTC	1 cut(s)	1704
Psp5II	RGGWCCY	2 cut(s)	968, 1741
Psp6I	CCWGG	3 cut(s)	261, 305, 1130
PspCI	CACGTG	1 cut(s)	1573
PspFI	CCCAGC	4 cut(s)	108, 117, 910, 1098
PspGI	CCWGG	3 cut(s)	261, 305, 1130
PspLI	CGTACG	1 cut(s)	345
PspN4I	GGNNCC	9 cut(s)	252, 304, 502, 859, 954, 970, 1370, 1506, 1560
PspPPI	RGGWCCY	2 cut(s)	968, 1741
PstNI	CAGNNNCTG	1 cut(s)	292
PsuI	RGATCY	2 cut(s)	787, 1368
PsyI	GACNNNGTC	4 cut(s)	436, 524, 693, 1726
RsaI	GTAC	6 cut(s)	347, 458, 976, 1068, 1110, 1959
RsaNI	GTAC	6 cut(s)	346, 457, 975, 1067, 1109, 1958
Rsr2I	CGGWCCG	1 cut(s)	655
RsrII	CGGWCCG	1 cut(s)	655
SacI	GAGCTC	1 cut(s)	1704
SacII	CCGCGG	1 cut(s)	249
SaqAI	TTAA	2 cut(s)	1766, 1818
ScaI	AGTACT	1 cut(s)	976
SchI	GAGTC	4 cut(s)	662, 932, 1736, 1793
ScrFI	CCNGG	9 cut(s)	263, 307, 499, 609, 635, 649, 1132, 1508, 1522
SduI	GDGCHC	4 cut(s)	372, 761, 948, 1704
SfaNI	GCATC	2 cut(s)	1673, 2068
SfcI	CTRYAG	1 cut(s)	710
SfoI	GGCGCC	2 cut(s)	252, 859
Sfr303I	CCGCGG	1 cut(s)	249
SfuI	TTCGAA	3 cut(s)	1187, 1193, 1649
SgrBI	CCGCGG	1 cut(s)	249
SinI	GGWCC	8 cut(s)	318, 655, 802, 953, 968, 1504, 1741, 1807
SmlI	CTYRAG	1 cut(s)	1703
SmoI	CTYRAG	1 cut(s)	1703
SpeI	ACTAGT	1 cut(s)	977
Sse9I	AATT	5 cut(s)	921, 1183, 1189, 1195, 1887
SspDI	GGCGCC	2 cut(s)	250, 857
SspMI	CTAG	4 cut(s)	978, 1023, 1476, 1878
SstI	GAGCTC	1 cut(s)	1704
StyD4I	CCNGG	9 cut(s)	261, 305, 497, 607, 633, 647, 1130, 1506, 1520
StyI	CCWWGG	1 cut(s)	849
TaaI	ACNGT	4 cut(s)	1265, 1401, 1490, 2011
TaiI	ACGT	5 cut(s)	440, 528, 1575, 1766, 1796
TasI	AATT	5 cut(s)	921, 1183, 1189, 1195, 1887
TatI	WGTACW	5 cut(s)	456, 974, 1066, 1108, 1957
TfiI	GAWTC	8 cut(s)	31, 1003, 1045, 1217, 1393, 1442, 1614, 1882
Tru1I	TTAA	2 cut(s)	1766, 1818
Tru9I	TTAA	2 cut(s)	1766, 1818
TscAI	CASTG	3 cut(s)	550, 948, 1270
TseFI	GTSAC	2 cut(s)	216, 541
TseI	GCWGC	8 cut(s)	277, 1170, 1173, 1353, 1407, 1714, 2022, 2044
Tsp45I	GTSAC	2 cut(s)	216, 541
TspDTI	ATGAA	3 cut(s)	44, 61, 809
TspGWI	ACGGA	8 cut(s)	20, 56, 315, 355, 566, 779, 1459, 1739
TspRI	CASTG	3 cut(s)	550, 948, 1270
Tth111I	GACNNNGTC	4 cut(s)	436, 524, 693, 1726
Van91I	CCANNNNNTGG	1 cut(s)	333
VneI	GTGCAC	1 cut(s)	944
VpaK11BI	GGWCC	8 cut(s)	318, 655, 802, 953, 968, 1504, 1741, 1807
XapI	RAATTY	4 cut(s)	1183, 1189, 1195, 1887
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2014
XmnI	GAANNNNTTC	1 cut(s)	1795
XspI	CTAG	4 cut(s)	978, 1023, 1476, 1878
ZraI	GACGTC	2 cut(s)	438, 526
ZrmI	AGTACT	1 cut(s)	976

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.