Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0003580

Physical Location & Seq

Genomic Coordinates Forward (+)

60199759 .. 60201012

Gene Structure 1254 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0432900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1254 bp

ATGGAAACCTTAAATTTAGGGCTTATGGCAGGGTGTATGGCCATATGCAATCGCATGCCGCCACCACCATCACAAATTTACAGTGCAGACCGCCTTCGAAATTGGCTCCGGCAACTGTTCTTCTCAGGCGGCGTGCTTAATAAACAACCTTGCTTATGTTCAGAGAGCTGGAACGACGATATTATTGTAGAGATACTGTCAAGGCTACCAGTGAAATATTTACTACGGTGTCGTTCTGTTTGCAAGTCATGGCGTGCTCTAATCTCCAGTTCTTATTTTGTTAAGAAGCACCTCAACCACGCAATCAATGGGATCGACAACAGTACTAACTGCACAATTAGGCTCCTGTTCTTACACAATAAGAACTTCTTAGAACATCATCCGGAATCCATGTTGGTTGACTCGTTGAAGAATTTTGTTGGCCACACTGCAAGCAAAGAGCTTGATATTCCGGGAATTTTGGAAGTTATTGTGGGTTCTTGCAATGGTTTGATATGCCTGAAAGCTCGCTGCGGCGGGGTTTTTCTATGGAACCCTTGTACCGGAGATGCCAGCAAGTTACCAGAACAAACTGTTAGTGATGCTAATTGGGGTGATATGTTTTATGGATTCGGTTATGATTCTACAACTGAAGATTTCAAGGTCATATTGGGTGGTACAACAACAACGAAAATCGAGGTCTTTACGCTGAAAAAGGGTTCATGGAGGAATGTTGGAAACCTGAGAGATTATGGTAAAATATCTGGGCAGGGGTGCTTATCAAACGGAGCCCTACATTGGATAGAAAAAGGCCGTGATTATCAATATAGTTCAACATCAAGAATTATCTTATTTAATTTAGCGGAGGAGAAATTTTTGGAGATGGTACGTCTATCCTTTCTTTCTAACAACAAATATTCCCAAATAGGAATGAGCACCATTAGAAATTCTCTCTTTGTGTACTGTGCCCATGAAGTGATCTTGGACCCTATATTGTTTACAATTTGGACGATGGAGGAATATGGGGTCATGGAATCTTGGACTAAAGTGCAATTTCATAGAGACTGTGTACCTCGACCTCCAGCACTTCCTGATATACATTACATTGGGCCGATAGTTATTTTACAGAATGGTGAAGTTCTGATGACTTGGAATTCAGGGAACTTATCATCATTTATATTATATAATGTACATAAGAAGAAATCTAGGATTGCTTCTCGGATCCGTGTTTGTGATTCATATAACCAAGCTACGTACATAGAGACTTATGGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005509 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006952 GO:0006970 GO:0006972 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009628 GO:0009651 GO:0009718 GO:0009719 GO:0009725 GO:0009753 GO:0009812 GO:0009813 GO:0009889 GO:0009891 GO:0009893 GO:0010033 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0042221 GO:0042440 GO:0042538 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043425 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0046148 GO:0046283 GO:0046872 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901576 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04016 ko04075 map04016 map04075

Pfam Domains

Protein Families

HLH bHLH-MYC_N

Protein Analysis

417

Amino Acids

47.3

Weight (kDa)

8.53

Isoelectric Point (pI)

41.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box	PF00646	59 - 95	1.8e-10	F-box domain
F-box-like	PF12937	59 - 93	2.4e-08	F-box-like
FBA_3	PF08268	142 - 396	3.4e-20	F-box associated beta propeller domain
FBA_1	PF07734	158 - 393	7.6e-20	F-box associated beta propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003580)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G32640
fragaria_vesca	FvH4_1g13600 FvH4_1g13601 FvH4_4g17280 FvH4_5g22100 FvH4_6g24370 FvH4_6g25910
prunus_persica	Prupe.5G035400_v2.0.a1
pyrus_communis	pycom06g02850 pycom16g24430
rosa_chinensis	RchiOBHm_Chr7g0209751
rosa_laevigata	RLG00000003096 RLG00000008856 RLG00000036489 RLG00000036838
rosa_multiflora	Rmu_sc0000161.1_g000024 Rmu_sc0002616.1_g000020
rosa_roxburghii	Rroxscaffold_1G00006980
rosa_rugosa	Rorug05G0432900 Rorug07G0116000
rosa_samantha	Rh4DG124100 Rh5AG516700 Rh5AG518900 Rh5AG519400 Rh5BG540600 Rh5CG563400 Rh5DG551100 Rh5DG551400 Rh5DG551800 Rh7AG249600 Rh7BG243500 Rh7CG265600 Rh7DG255400
rosa_wichuraiana	Rw0G022750 Rw7G021160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	382
AciI	CCGC	6 cut(s)	59, 91, 129, 513, 516, 842
AclWI	GGATC	3 cut(s)	320, 1195, 1208
AcoI	YGGCCR	2 cut(s)	39, 421
AcsI	RAATTY	7 cut(s)	13, 75, 412, 456, 851, 925, 1132
AcuI	CTGAAG	1 cut(s)	651
AfaI	GTAC	8 cut(s)	325, 541, 658, 867, 941, 1050, 1170, 1235
AfiI	CCNNNNNNNGG	2 cut(s)	542, 777
AgsI	TTSAA	3 cut(s)	409, 640, 813
AluBI	AGCT	4 cut(s)	168, 442, 506, 1229
AluI	AGCT	4 cut(s)	168, 442, 506, 1229
Alw21I	GWGCWC	2 cut(s)	259, 917
Alw26I	GTCTC	2 cut(s)	1035, 1235
AlwI	GGATC	3 cut(s)	320, 1195, 1208
Aor13HI	TCCGGA	1 cut(s)	382
AoxI	GGCC	4 cut(s)	39, 421, 790, 1088
ApeKI	GCWGC	1 cut(s)	510
ApoI	RAATTY	7 cut(s)	13, 75, 412, 456, 851, 925, 1132
AspS9I	GGNCC	2 cut(s)	964, 1088
AsuC2I	CCSGG	1 cut(s)	453
AsuHPI	GGTGA	2 cut(s)	605, 1124
AsuII	TTCGAA	1 cut(s)	97
AvaII	GGWCC	1 cut(s)	964
BaeGI	GKGCMC	1 cut(s)	949
BaeI	ACNNNNGTAYC	2 cut(s)	523, 556
BalI	TGGCCA	2 cut(s)	41, 423
BamHI	GGATCC	1 cut(s)	1200
BanII	GRGCYC	1 cut(s)	772
Bbv12I	GWGCWC	2 cut(s)	259, 917
BbvI	GCAGC	1 cut(s)	497
BccI	CCATC	3 cut(s)	76, 856, 985
BceAI	ACGGC	1 cut(s)	777
BcnI	CCSGG	1 cut(s)	453
BcoDI	GTCTC	2 cut(s)	1035, 1235
BfaI	CTAG	1 cut(s)	1185
BisI	GCNGC	4 cut(s)	59, 130, 511, 514
BlsI	GCNGC	4 cut(s)	60, 131, 512, 515
BmcAI	AGTACT	1 cut(s)	325
Bme1390I	CCNGG	1 cut(s)	453
Bme18I	GGWCC	1 cut(s)	964
BmgT120I	GGNCC	2 cut(s)	964, 1088
BmiI	GGNNCC	6 cut(s)	107, 344, 533, 769, 966, 1202
BmrFI	CCNGG	1 cut(s)	453
BmsI	GCATC	2 cut(s)	538, 571
BpmI	CTGGAG	2 cut(s)	250, 1044
Bpu14I	TTCGAA	1 cut(s)	97
BpuMI	CCSGG	1 cut(s)	453
BsaAI	YACGTR	1 cut(s)	1233
BsaWI	WCCGGW	2 cut(s)	382, 542
Bsc4I	CCNNNNNNNGG	2 cut(s)	542, 777
Bse1I	ACTGG	2 cut(s)	209, 267
Bse3DI	GCAATG	1 cut(s)	490
BseAI	TCCGGA	1 cut(s)	382
BseGI	GGATG	1 cut(s)	379
BseLI	CCNNNNNNNGG	2 cut(s)	542, 777
BseMI	GCAATG	1 cut(s)	490
BseMII	CTCAG	2 cut(s)	138, 713
BseNI	ACTGG	2 cut(s)	209, 267
BseRI	GAGGAG	1 cut(s)	860
BseSI	GKGCMC	1 cut(s)	949
BseXI	GCAGC	1 cut(s)	497
BsgI	GTGCAG	2 cut(s)	105, 316
BshFI	GGCC	4 cut(s)	41, 423, 792, 1090
BsiHKAI	GWGCWC	2 cut(s)	259, 917
BsiSI	CCGG	4 cut(s)	109, 383, 452, 543
BslI	CCNNNNNNNGG	2 cut(s)	542, 777
BsmAI	GTCTC	2 cut(s)	1035, 1235
BsnI	GGCC	4 cut(s)	41, 423, 792, 1090
Bsp119I	TTCGAA	1 cut(s)	97
Bsp1286I	GDGCHC	4 cut(s)	259, 772, 917, 949
Bsp13I	TCCGGA	1 cut(s)	382
Bsp1407I	TGTACA	1 cut(s)	1168
Bsp143I	GATC	3 cut(s)	312, 957, 1200
BspACI	CCGC	6 cut(s)	59, 91, 129, 513, 516, 842
BspANI	GGCC	4 cut(s)	41, 423, 792, 1090
BspCNI	CTCAG	2 cut(s)	137, 714
BspEI	TCCGGA	1 cut(s)	382
BspLI	GGNNCC	6 cut(s)	107, 344, 533, 769, 966, 1202
BspPI	GGATC	3 cut(s)	320, 1195, 1208
BspT104I	TTCGAA	1 cut(s)	97
BsrDI	GCAATG	1 cut(s)	490
BsrGI	TGTACA	1 cut(s)	1168
BsrI	ACTGG	2 cut(s)	209, 267
BssMI	GATC	3 cut(s)	312, 957, 1200
Bst4CI	ACNGT	8 cut(s)	83, 117, 198, 228, 323, 574, 944, 1046
BstAUI	TGTACA	1 cut(s)	1168
BstBAI	YACGTR	1 cut(s)	1233
BstBI	TTCGAA	1 cut(s)	97
BstC8I	GCNNGC	6 cut(s)	56, 134, 255, 433, 508, 553
BstDEI	CTNAG	3 cut(s)	124, 370, 722
BstF5I	GGATG	1 cut(s)	379
BstKTI	GATC	3 cut(s)	315, 960, 1203
BstMAI	GTCTC	2 cut(s)	1035, 1235
BstMBI	GATC	3 cut(s)	312, 957, 1200
BstNSI	RCATGY	1 cut(s)	58
BstSCI	CCNGG	1 cut(s)	451
BstSLI	GKGCMC	1 cut(s)	949
BstSNI	TACGTA	1 cut(s)	1233
BstV1I	GCAGC	1 cut(s)	497
BstX2I	RGATCY	1 cut(s)	1200
BstYI	RGATCY	1 cut(s)	1200
BsuRI	GGCC	4 cut(s)	41, 423, 792, 1090
BtsCI	GGATG	1 cut(s)	379
BtsI	GCAGTG	1 cut(s)	426
BtsIMutI	CAGTG	3 cut(s)	88, 216, 426
Cac8I	GCNNGC	6 cut(s)	56, 134, 255, 433, 508, 553
Cfr13I	GGNCC	2 cut(s)	964, 1088
Csp6I	GTAC	8 cut(s)	324, 540, 657, 866, 940, 1049, 1169, 1234
CviAII	CATG	6 cut(s)	55, 249, 391, 702, 950, 1009
CviQI	GTAC	8 cut(s)	324, 540, 657, 866, 940, 1049, 1169, 1234
DdeI	CTNAG	3 cut(s)	124, 370, 722
DpnI	GATC	3 cut(s)	314, 959, 1202
DpnII	GATC	3 cut(s)	312, 957, 1200
EaeI	YGGCCR	2 cut(s)	39, 421
Eco105I	TACGTA	1 cut(s)	1233
Eco24I	GRGCYC	1 cut(s)	772
Eco47I	GGWCC	1 cut(s)	964
Eco57I	CTGAAG	1 cut(s)	651
EcoRI	GAATTC	1 cut(s)	1132
EcoT38I	GRGCYC	1 cut(s)	772
FaeI	CATG	6 cut(s)	58, 252, 394, 705, 953, 1012
FalI	AAGNNNNNCTT	2 cut(s)	353, 385
FatI	CATG	6 cut(s)	54, 248, 390, 701, 949, 1008
FauI	CCCGC	1 cut(s)	509
FauNDI	CATATG	1 cut(s)	44
Fnu4HI	GCNGC	4 cut(s)	59, 130, 511, 514
FokI	GGATG	1 cut(s)	366
FriOI	GRGCYC	1 cut(s)	772
Fsp4HI	GCNGC	4 cut(s)	59, 130, 511, 514
FspBI	CTAG	1 cut(s)	1185
GluI	GCNGC	4 cut(s)	59, 130, 511, 514
GsuI	CTGGAG	2 cut(s)	250, 1044
HaeIII	GGCC	4 cut(s)	41, 423, 792, 1090
HapII	CCGG	4 cut(s)	109, 383, 452, 543
Hin1II	CATG	6 cut(s)	58, 252, 394, 705, 953, 1012
HincII	GTYRAC	1 cut(s)	400
HindII	GTYRAC	1 cut(s)	400
HinfI	GANTC	6 cut(s)	386, 401, 609, 620, 1013, 1214
HpaII	CCGG	4 cut(s)	109, 383, 452, 543
HphI	GGTGA	2 cut(s)	605, 1124
Hpy166II	GTNNAC	4 cut(s)	400, 940, 978, 1049
Hpy188I	TCNGA	3 cut(s)	163, 1122, 1200
Hpy188III	TCNNGA	3 cut(s)	383, 819, 1070
Hpy8I	GTNNAC	4 cut(s)	400, 940, 978, 1049
Hpy99I	CGWCG	1 cut(s)	179
HpyAV	CCTTC	1 cut(s)	104
HpyCH4III	ACNGT	8 cut(s)	83, 117, 198, 228, 323, 574, 944, 1046
HpyCH4IV	ACGT	2 cut(s)	868, 1232
HpyCH4V	TGCA	7 cut(s)	48, 86, 243, 333, 431, 483, 1030
HpyF3I	CTNAG	3 cut(s)	124, 370, 722
HpySE526I	ACGT	2 cut(s)	868, 1232
Hsp92II	CATG	6 cut(s)	58, 252, 394, 705, 953, 1012
Kpn2I	TCCGGA	1 cut(s)	382
Kzo9I	GATC	3 cut(s)	312, 957, 1200
LmnI	GCTCC	3 cut(s)	111, 348, 767
Lsp1109I	GCAGC	1 cut(s)	497
LweI	GCATC	2 cut(s)	538, 571
MaeI	CTAG	1 cut(s)	1185
MaeII	ACGT	2 cut(s)	868, 1232
MaeIII	GTNAC	1 cut(s)	558
MalI	GATC	3 cut(s)	314, 959, 1202
MboI	GATC	3 cut(s)	312, 957, 1200
MboII	GAAGA	4 cut(s)	112, 421, 644, 1189
MflI	RGATCY	1 cut(s)	1200
MhlI	GDGCHC	4 cut(s)	259, 772, 917, 949
MlsI	TGGCCA	2 cut(s)	41, 423
MluNI	TGGCCA	2 cut(s)	41, 423
MlyI	GAGTC	1 cut(s)	395
MmeI	TCCRAC	1 cut(s)	694
MnlI	CCTC	7 cut(s)	302, 670, 699, 838, 988, 1062, 1068
Mox20I	TGGCCA	2 cut(s)	41, 423
MroI	TCCGGA	1 cut(s)	382
MscI	TGGCCA	2 cut(s)	41, 423
MseI	TTAA	4 cut(s)	11, 138, 282, 834
Msp20I	TGGCCA	2 cut(s)	41, 423
MspI	CCGG	4 cut(s)	109, 383, 452, 543
MspR9I	CCNGG	1 cut(s)	453
NciI	CCSGG	1 cut(s)	453
NdeI	CATATG	1 cut(s)	44
NdeII	GATC	3 cut(s)	312, 957, 1200
NlaIII	CATG	6 cut(s)	58, 252, 394, 705, 953, 1012
NlaIV	GGNNCC	6 cut(s)	107, 344, 533, 769, 966, 1202
NspI	RCATGY	1 cut(s)	58
NspV	TTCGAA	1 cut(s)	97
PaeI	GCATGC	1 cut(s)	58
PfeI	GAWTC	5 cut(s)	386, 609, 620, 1013, 1214
PfoI	TCCNGGA	1 cut(s)	451
PkrI	GCNGC	4 cut(s)	60, 131, 512, 515
PleI	GAGTC	1 cut(s)	395
PpsI	GAGTC	1 cut(s)	395
Ppu21I	YACGTR	1 cut(s)	1233
PspN4I	GGNNCC	6 cut(s)	107, 344, 533, 769, 966, 1202
PspPI	GGNCC	2 cut(s)	964, 1088
PsuI	RGATCY	1 cut(s)	1200
RsaI	GTAC	8 cut(s)	325, 541, 658, 867, 941, 1050, 1170, 1235
RsaNI	GTAC	8 cut(s)	324, 540, 657, 866, 940, 1049, 1169, 1234
SaqAI	TTAA	4 cut(s)	11, 138, 282, 834
SatI	GCNGC	4 cut(s)	59, 130, 511, 514
Sau3AI	GATC	3 cut(s)	312, 957, 1200
Sau96I	GGNCC	2 cut(s)	964, 1088
ScaI	AGTACT	1 cut(s)	325
SchI	GAGTC	1 cut(s)	395
ScrFI	CCNGG	1 cut(s)	453
SduI	GDGCHC	4 cut(s)	259, 772, 917, 949
SfaNI	GCATC	2 cut(s)	538, 571
SfuI	TTCGAA	1 cut(s)	97
SinI	GGWCC	1 cut(s)	964
SnaBI	TACGTA	1 cut(s)	1233
SphI	GCATGC	1 cut(s)	58
SsiI	CCGC	6 cut(s)	59, 91, 129, 513, 516, 842
SspI	AATATT	2 cut(s)	218, 896
SspMI	CTAG	1 cut(s)	1185
StyD4I	CCNGG	1 cut(s)	451
TaaI	ACNGT	8 cut(s)	83, 117, 198, 228, 323, 574, 944, 1046
TaiI	ACGT	2 cut(s)	871, 1235
TaqI	TCGA	4 cut(s)	97, 315, 675, 1054
TatI	WGTACW	3 cut(s)	323, 939, 1168
TauI	GCSGC	3 cut(s)	61, 132, 516
TfiI	GAWTC	5 cut(s)	386, 609, 620, 1013, 1214
Tru1I	TTAA	4 cut(s)	11, 138, 282, 834
Tru9I	TTAA	4 cut(s)	11, 138, 282, 834
TscAI	CASTG	3 cut(s)	88, 216, 433
TseI	GCWGC	1 cut(s)	510
TspDTI	ATGAA	4 cut(s)	690, 966, 1025, 1206
TspGWI	ACGGA	2 cut(s)	780, 1193
TspRI	CASTG	3 cut(s)	88, 216, 433
VpaK11BI	GGWCC	1 cut(s)	964
XapI	RAATTY	7 cut(s)	13, 75, 412, 456, 851, 925, 1132
XceI	RCATGY	1 cut(s)	58
XcmI	CCANNNNNNNNNTGG	1 cut(s)	305
XspI	CTAG	1 cut(s)	1185
ZrmI	AGTACT	1 cut(s)	325

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.