Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0003580

Physical Location & Seq

Genomic Coordinates Reverse (-)

41229910 .. 41230460

Gene Structure 551 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000008856

Sequence Viewer

CDS Protein Promoter (2k)

Length: 318 bp

ATGAACAAGGTCCAAGTATTGTTTGATATTAATAACCTTGAAGTCGGTTCTTGGCCTATGGGTGGCGCCAACAATCAGGGCGAGAATGACCCGTTGTCGCTGTGGATCAACGACAACTTGGCCAGCACAATTGAAGTTGTCAAGGAGTCCGTGAACATGGGTGGTTTAATGGAAGAGGATGAGGGAACCCTCGAGGAGGACGGAAAGAACAAGAAGGGACGGAGTCGGCGAGTAGTGAACAACCCAAATCAGGCGCGTACAGTTGCAGGATCGTGGTTCCCCCGATGTCAGATTCCTTCATCCACTCTCCGAATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005509 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006952 GO:0006970 GO:0006972 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009628 GO:0009651 GO:0009718 GO:0009719 GO:0009725 GO:0009753 GO:0009812 GO:0009813 GO:0009889 GO:0009891 GO:0009893 GO:0010033 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0042221 GO:0042440 GO:0042538 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043425 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0046148 GO:0046283 GO:0046872 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901576 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04016 ko04075 map04016 map04075

Pfam Domains

Protein Families

HLH bHLH-MYC_N

Protein Analysis

106

Amino Acids

11.61

Weight (kDa)

4.9

Isoelectric Point (pI)

44.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003580)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G32640
fragaria_vesca	FvH4_1g13600 FvH4_1g13601 FvH4_4g17280 FvH4_5g22100 FvH4_6g24370 FvH4_6g25910
prunus_persica	Prupe.5G035400_v2.0.a1
pyrus_communis	pycom06g02850 pycom16g24430
rosa_chinensis	RchiOBHm_Chr7g0209751
rosa_laevigata	RLG00000003096 RLG00000008856 RLG00000036489 RLG00000036838
rosa_multiflora	Rmu_sc0000161.1_g000024 Rmu_sc0002616.1_g000020
rosa_roxburghii	Rroxscaffold_1G00006980
rosa_rugosa	Rorug05G0432900 Rorug07G0116000
rosa_samantha	Rh4DG124100 Rh5AG516700 Rh5AG518900 Rh5AG519400 Rh5BG540600 Rh5CG563400 Rh5DG551100 Rh5DG551400 Rh5DG551800 Rh7AG249600 Rh7BG243500 Rh7CG265600 Rh7DG255400
rosa_wichuraiana	Rw0G022750 Rw7G021160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	191
AccB1I	GGYRCC	1 cut(s)	65
AccII	CGCG	1 cut(s)	256
AclWI	GGATC	2 cut(s)	113, 277
AcoI	YGGCCR	1 cut(s)	120
AcyI	GRCGYC	1 cut(s)	66
AfaI	GTAC	1 cut(s)	259
AfiI	CCNNNNNNNGG	3 cut(s)	62, 196, 250
AgsI	TTSAA	2 cut(s)	41, 134
AhdI	GACNNNNNGTC	1 cut(s)	94
AlwI	GGATC	2 cut(s)	113, 277
Ama87I	CYCGRG	1 cut(s)	191
AoxI	GGCC	2 cut(s)	53, 120
AseI	ATTAAT	1 cut(s)	30
AspLEI	GCGC	2 cut(s)	68, 256
AspS9I	GGNCC	1 cut(s)	10
AvaI	CYCGRG	1 cut(s)	191
AvaII	GGWCC	1 cut(s)	10
BalI	TGGCCA	1 cut(s)	122
BanI	GGYRCC	1 cut(s)	65
BfoI	RGCGCY	1 cut(s)	69
Bme18I	GGWCC	1 cut(s)	10
BmeRI	GACNNNNNGTC	1 cut(s)	94
BmeT110I	CYCGRG	1 cut(s)	191
BmgT120I	GGNCC	1 cut(s)	10
BmiI	GGNNCC	3 cut(s)	67, 187, 278
BsaHI	GRCGYC	1 cut(s)	66
Bsc4I	CCNNNNNNNGG	3 cut(s)	62, 196, 250
BseGI	GGATG	2 cut(s)	184, 299
BseLI	CCNNNNNNNGG	3 cut(s)	62, 196, 250
BseRI	GAGGAG	1 cut(s)	209
Bsh1236I	CGCG	1 cut(s)	256
BshFI	GGCC	2 cut(s)	55, 122
BshNI	GGYRCC	1 cut(s)	65
BsiHKCI	CYCGRG	1 cut(s)	191
BslFI	GGGAC	1 cut(s)	231
BslI	CCNNNNNNNGG	3 cut(s)	62, 196, 250
BsmFI	GGGAC	1 cut(s)	231
BsnI	GGCC	2 cut(s)	55, 122
BsoBI	CYCGRG	1 cut(s)	191
Bsp143I	GATC	2 cut(s)	105, 269
BspANI	GGCC	2 cut(s)	55, 122
BspFNI	CGCG	1 cut(s)	256
BspLI	GGNNCC	3 cut(s)	67, 187, 278
BspPI	GGATC	2 cut(s)	113, 277
BspT107I	GGYRCC	1 cut(s)	65
BssMI	GATC	2 cut(s)	105, 269
BssNI	GRCGYC	1 cut(s)	66
Bst4CI	ACNGT	1 cut(s)	262
Bst6I	CTCTTC	1 cut(s)	168
BstACI	GRCGYC	1 cut(s)	66
BstC8I	GCNNGC	1 cut(s)	124
BstENI	CCTNNNNNAGG	1 cut(s)	194
BstF5I	GGATG	2 cut(s)	184, 299
BstFNI	CGCG	1 cut(s)	256
BstH2I	RGCGCY	1 cut(s)	69
BstHHI	GCGC	2 cut(s)	68, 256
BstKTI	GATC	2 cut(s)	108, 272
BstMBI	GATC	2 cut(s)	105, 269
BstUI	CGCG	1 cut(s)	256
BsuRI	GGCC	2 cut(s)	55, 122
BtsCI	GGATG	2 cut(s)	184, 299
Cac8I	GCNNGC	1 cut(s)	124
CfoI	GCGC	2 cut(s)	68, 256
Cfr13I	GGNCC	1 cut(s)	10
Csp6I	GTAC	1 cut(s)	258
CviAII	CATG	1 cut(s)	157
CviJI	RGCY	2 cut(s)	55, 122
CviKI_1	RGCY	2 cut(s)	55, 122
CviQI	GTAC	1 cut(s)	258
DinI	GGCGCC	1 cut(s)	67
DpnI	GATC	2 cut(s)	107, 271
DpnII	GATC	2 cut(s)	105, 269
DriI	GACNNNNNGTC	1 cut(s)	94
EaeI	YGGCCR	1 cut(s)	120
Eam1104I	CTCTTC	1 cut(s)	168
Eam1105I	GACNNNNNGTC	1 cut(s)	94
EarI	CTCTTC	1 cut(s)	168
Eco47I	GGWCC	1 cut(s)	10
Eco88I	CYCGRG	1 cut(s)	191
EcoNI	CCTNNNNNAGG	1 cut(s)	194
EgeI	GGCGCC	1 cut(s)	67
EheI	GGCGCC	1 cut(s)	67
FaeI	CATG	1 cut(s)	160
FaiI	YATR	3 cut(s)	59, 158, 316
FaqI	GGGAC	1 cut(s)	231
FatI	CATG	1 cut(s)	156
FokI	GGATG	2 cut(s)	191, 286
GlaI	GCGC	2 cut(s)	67, 255
HaeII	RGCGCY	1 cut(s)	69
HaeIII	GGCC	2 cut(s)	55, 122
HhaI	GCGC	2 cut(s)	68, 256
Hin1I	GRCGYC	1 cut(s)	66
Hin1II	CATG	1 cut(s)	160
Hin6I	GCGC	2 cut(s)	66, 254
HinP1I	GCGC	2 cut(s)	66, 254
HinfI	GANTC	3 cut(s)	146, 223, 292
Hpy166II	GTNNAC	2 cut(s)	154, 238
Hpy188I	TCNGA	2 cut(s)	291, 311
Hpy8I	GTNNAC	2 cut(s)	154, 238
HpyAV	CCTTC	2 cut(s)	208, 306
HpyCH4III	ACNGT	1 cut(s)	262
HpyCH4V	TGCA	1 cut(s)	266
Hsp92I	GRCGYC	1 cut(s)	66
Hsp92II	CATG	1 cut(s)	160
HspAI	GCGC	2 cut(s)	66, 254
KasI	GGCGCC	1 cut(s)	65
Kzo9I	GATC	2 cut(s)	105, 269
LpnPI	CCDG	4 cut(s)	62, 136, 236, 252
MalI	GATC	2 cut(s)	107, 271
MboI	GATC	2 cut(s)	105, 269
MboII	GAAGA	1 cut(s)	185
MfeI	CAATTG	1 cut(s)	129
MlsI	TGGCCA	1 cut(s)	122
MluCI	AATT	1 cut(s)	129
MluNI	TGGCCA	1 cut(s)	122
Mly113I	GGCGCC	1 cut(s)	66
MlyI	GAGTC	2 cut(s)	155, 232
MnlI	CCTC	5 cut(s)	169, 175, 187, 190, 200
Mox20I	TGGCCA	1 cut(s)	122
MscI	TGGCCA	1 cut(s)	122
MseI	TTAA	2 cut(s)	30, 167
Msp20I	TGGCCA	1 cut(s)	122
MunI	CAATTG	1 cut(s)	129
MvnI	CGCG	1 cut(s)	256
NarI	GGCGCC	1 cut(s)	66
NdeII	GATC	2 cut(s)	105, 269
NlaIII	CATG	1 cut(s)	160
NlaIV	GGNNCC	3 cut(s)	67, 187, 278
PaeR7I	CTCGAG	1 cut(s)	191
PcsI	WCGNNNNNNNCGW	1 cut(s)	226
PfeI	GAWTC	1 cut(s)	292
PflFI	GACNNNGTC	1 cut(s)	222
PleI	GAGTC	2 cut(s)	154, 231
PluTI	GGCGCC	1 cut(s)	69
PpsI	GAGTC	2 cut(s)	154, 231
PshBI	ATTAAT	1 cut(s)	30
PspN4I	GGNNCC	3 cut(s)	67, 187, 278
PspPI	GGNCC	1 cut(s)	10
PspXI	VCTCGAGB	1 cut(s)	191
PsyI	GACNNNGTC	1 cut(s)	222
RsaI	GTAC	1 cut(s)	259
RsaNI	GTAC	1 cut(s)	258
SaqAI	TTAA	2 cut(s)	30, 167
Sau3AI	GATC	2 cut(s)	105, 269
Sau96I	GGNCC	1 cut(s)	10
SchI	GAGTC	2 cut(s)	155, 232
SetI	ASST	2 cut(s)	12, 39
SfoI	GGCGCC	1 cut(s)	67
Sfr274I	CTCGAG	1 cut(s)	191
SinI	GGWCC	1 cut(s)	10
SlaI	CTCGAG	1 cut(s)	191
SmlI	CTYRAG	1 cut(s)	191
SmoI	CTYRAG	1 cut(s)	191
Sse9I	AATT	1 cut(s)	129
SspDI	GGCGCC	1 cut(s)	65
TaaI	ACNGT	1 cut(s)	262
TaqI	TCGA	1 cut(s)	192
TasI	AATT	1 cut(s)	129
TfiI	GAWTC	1 cut(s)	292
Tru1I	TTAA	2 cut(s)	30, 167
Tru9I	TTAA	2 cut(s)	30, 167
TspDTI	ATGAA	2 cut(s)	17, 288
TspGWI	ACGGA	3 cut(s)	139, 216, 235
Tth111I	GACNNNGTC	1 cut(s)	222
VpaK11BI	GGWCC	1 cut(s)	10
VspI	ATTAAT	1 cut(s)	30
XagI	CCTNNNNNAGG	1 cut(s)	194
XhoI	CTCGAG	1 cut(s)	191

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.