Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0003580

Physical Location & Seq

Genomic Coordinates Reverse (-)

24337002 .. 24339807

Gene Structure 2806 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G021160.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2085 bp

ATGACGGACTACCGGATACCTGCTCCCACCATGAATCTCTGGACGGACGACAACGCGTCTCTCATGGAAGCCTTCATGAGCAACTCCGATCTCACCTCCTTCTGGGCCGCCCAGCCGGCCCAGCCCGCAACCCAACCCGCACATCCCCTCCACCAGCCTCAGTCCTCCGCTTCCACCTCCGACTATCCCCGCCCTCCGGCCGCGCAGTCGCAGTCGCAGTCGCAGCCTCCGCCGCCGCCGGCCGCGGCGCCGTTCAACCAGGAGACGCTTATGCAGCGGCTTCAGGCGCTGATCGACGGAGCCAGGGAGAGCTGGACCTACGCCATCTTCTGGCAGTCGTCGTACGAGATTTCCGGAGCTTCCGTGCTCGGATGGGGCGAGGGGTTCTACAAGGACGAGAGGGACAAGGTGAAAGCGAAGCCCAAAACGACGACGTCGTTGGTCGAGCAGGAGTACCGGAAGAAAGTGCTGAGAGACCTCAACTCTTTGATTTCCGGGGCCGACAACACCGCCGAGGACGACGTCGTGGATCAGGAAGTCACTGATACGGAATGGTTCTTCCTCGTTTCCATGACCCAGAACTTCGTCAACGGCGTCGGGTTGCCGGGTCAGGCTTTTTTTCAGTCCAACCCGGTCTGGGTCGCCGGGCCGGACCGCCTCGCCGACTCGCCGTGCGAGCGGGCCAGACAAGGTCAGGTGTTCGGCCTACAGACTATGGTCTGCGTCCCGACGGCGAATGGGGTCGTCGAGTTGGGCTCGACGGAGCTTATATACCAGAGCGCGGATCTGATGAACAAGGTCCGAGTGTTGTTTGATTTCAATAACCTGGAAGTCGGTTCTTGGCCCATGGGTGGCGCCGCCGATCAGGGAGAGAACGACCCGTCGTCGCTGTGGATCAACGACAACCCGGCCAGCACAATTGAAGTTGTCAAGGACTCAGTGCACATGGGTCCGGCGACTTCAGGACCCAGTACTAGTAACCATCAAATCTCCAAGCCGATTCAGTTCGACAGCCACCCTAGTTCGAGTGGCTTATCGGAGAATCCGAGCGCCGTTCTCCAAGTACAATCTCAGAGCAATCACCACCACCAAGCCCAGCAGCAAGTACAGACTCAGAGCTTCTTCACCAGGGAGCTGAACTTCTCCGATTACAACGGCTACGACGGCAGCAGCGTCAAGAATTCGAATTCGAATTCTCATTCCTTGAAGCCGGAATCCGGCGAGATATTGAACTTCGGCGAGAGCAAGAGGACATCTTACAGTGCCAACAACGGGAAGTTGTTTTCGGCTCAATCCCAAATCGCCGCCGAAGACAACAACAAAAAGAAGAGATCGCCGCCGTCGAGGGGCAGCAACGACGAGGGGATCCTGTCGTTTAGTTCGGGAGTGATTCTACCATCGAGCAGCGGCGTCGTGAAATCGAGCGTCGGCCCAGTAGATTCTGACCACTCCGACCTCGAAGCATCCGTGGCTAGGGAGGCCGACAGTAGCAGAGTTGTGGACCCGGAAAAACGACCCCGGAAAAGAGGTCGTAAACCGGCGAACGGCAGAGAGGAGCCGCTGAACCACGTGGAGGCGGAGAGACAGAGAAGAGAGAAGCTCAACCAGAGATTCTATGCTCTCCGAGCTGTCGTCCCAAATGTTTCGAAAATGGACAAGGCATCTCTGCTTGGAGACGCCATCTCTTACATCACCGAGCTCAAGACGAAGCTGCAAACGACGGAGTCCGACAAGGAGGACCTCCACAAGCAAGTGGAGACGTTAAGTAAGGAGCTACAAGAGTCACGAACGTCTTCGGGTTTGGACCAAGAGCTTAAAGGGTCTAATAAGTTGATCGATTTGGATATTGATGTGAAGATACTCGGATGGGACGCTAGGATTCAAATTCAATGTAGCAAGAAGAACCACCCTGCGGCGAGACTAATGGCGGCGCTGATGGAGCTGGACTTGGATGTACACCATGCCAGCGTCTCGGTAGTCAATGATTTGATGATCCAGCAAGCCACCGTGAGGATGGGCAGCCGGGTTTACACGCAGGAGCAGCTCAGGTTAGCTCTATCAGCCAAAGTGGGGGATGCCAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005509 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006952 GO:0006970 GO:0006972 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009628 GO:0009651 GO:0009718 GO:0009719 GO:0009725 GO:0009753 GO:0009812 GO:0009813 GO:0009889 GO:0009891 GO:0009893 GO:0010033 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0042221 GO:0042440 GO:0042538 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043425 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0046148 GO:0046283 GO:0046872 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901576 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04016 ko04075 map04016 map04075

Pfam Domains

Protein Families

HLH bHLH-MYC_N

Protein Analysis

694

Amino Acids

76.25

Weight (kDa)

5.45

Isoelectric Point (pI)

47.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
bHLH-MYC_N	PF14215	90 - 271	2.6e-54	bHLH-MYC and R2R3-MYB transcription factors N-terminal
HLH	PF00010	522 - 568	1e-11	Helix-loop-helix DNA-binding domain
bHLH-TF_ACT-like_plant	PF22754	616 - 686	3.5e-07	Plant bHLH transcription factor, ACT-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003580)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G32640
fragaria_vesca	FvH4_1g13600 FvH4_1g13601 FvH4_4g17280 FvH4_5g22100 FvH4_6g24370 FvH4_6g25910
prunus_persica	Prupe.5G035400_v2.0.a1
pyrus_communis	pycom06g02850 pycom16g24430
rosa_chinensis	RchiOBHm_Chr7g0209751
rosa_laevigata	RLG00000003096 RLG00000008856 RLG00000036489 RLG00000036838
rosa_multiflora	Rmu_sc0000161.1_g000024 Rmu_sc0002616.1_g000020
rosa_roxburghii	Rroxscaffold_1G00006980
rosa_rugosa	Rorug05G0432900 Rorug07G0116000
rosa_samantha	Rh4DG124100 Rh5AG516700 Rh5AG518900 Rh5AG519400 Rh5BG540600 Rh5CG563400 Rh5DG551100 Rh5DG551400 Rh5DG551800 Rh7AG249600 Rh7BG243500 Rh7CG265600 Rh7DG255400
rosa_wichuraiana	Rw0G022750 Rw7G021160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	2 cut(s)	437, 525
Acc36I	ACCTGC	1 cut(s)	28
AccB1I	GGYRCC	2 cut(s)	247, 854
AccB7I	CCANNNNNTGG	1 cut(s)	330
AccBSI	CCGCTC	1 cut(s)	679
AccII	CGCG	4 cut(s)	56, 203, 245, 782
AccIII	TCCGGA	1 cut(s)	353
AclWI	GGATC	6 cut(s)	537, 792, 902, 1360, 1373, 1987
AcoI	YGGCCR	3 cut(s)	198, 240, 909
AcsI	RAATTY	4 cut(s)	1180, 1186, 1192, 1884
AcuI	CTGAAG	2 cut(s)	266, 945
AcvI	CACGTG	1 cut(s)	1570
AcyI	GRCGYC	7 cut(s)	248, 434, 522, 594, 855, 1410, 1677
AfaI	GTAC	6 cut(s)	344, 455, 973, 1065, 1107, 1956
AflIII	ACRYGT	1 cut(s)	54
AgsI	TTSAA	7 cut(s)	256, 820, 923, 1207, 1231, 1883, 1889
AhdI	GACNNNNNGTC	2 cut(s)	55, 883
AhlI	ACTAGT	1 cut(s)	974
AjnI	CCWGG	4 cut(s)	258, 302, 825, 1127
Alw21I	GWGCWC	3 cut(s)	369, 945, 1701
Alw26I	GTCTC	8 cut(s)	63, 257, 468, 1576, 1668, 1751, 1912, 1975
Alw44I	GTGCAC	1 cut(s)	941
AlwI	GGATC	6 cut(s)	537, 792, 902, 1360, 1373, 1987
AlwNI	CAGNNNCTG	1 cut(s)	289
Aor13HI	TCCGGA	1 cut(s)	353
ApaLI	GTGCAC	1 cut(s)	941
ApoI	RAATTY	4 cut(s)	1180, 1186, 1192, 1884
Asp700I	GAANNNNTTC	1 cut(s)	1792
AspLEI	GCGC	7 cut(s)	205, 250, 289, 782, 857, 1052, 1933
AsuC2I	CCSGG	8 cut(s)	496, 606, 632, 646, 908, 1505, 1519, 2024
AsuHPI	GGTGA	5 cut(s)	85, 421, 1073, 1117, 1684
AsuII	TTCGAA	3 cut(s)	1184, 1190, 1646
AvaII	GGWCC	8 cut(s)	315, 652, 799, 950, 965, 1501, 1738, 1804
BaeGI	GKGCMC	1 cut(s)	945
BamHI	GGATCC	1 cut(s)	1365
BanI	GGYRCC	2 cut(s)	247, 854
BanII	GRGCYC	2 cut(s)	758, 1701
BbrPI	CACGTG	1 cut(s)	1570
BbsI	GAAGAC	2 cut(s)	1317, 1785
Bbv12I	GWGCWC	3 cut(s)	369, 945, 1701
BccI	CCATC	8 cut(s)	332, 366, 990, 1405, 1688, 1860, 1930, 2008
BceAI	ACGGC	9 cut(s)	235, 607, 655, 747, 1037, 1171, 1180, 1324, 1561
BcgI	CGANNNNNNTGC	2 cut(s)	1393, 1427
BciT130I	CCWGG	4 cut(s)	260, 304, 827, 1129
BciVI	GTATCC	1 cut(s)	9
BcnI	CCSGG	8 cut(s)	496, 606, 632, 646, 908, 1505, 1519, 2024
BcoDI	GTCTC	8 cut(s)	63, 257, 468, 1576, 1668, 1751, 1912, 1975
BcuI	ACTAGT	1 cut(s)	974
BfaI	CTAG	4 cut(s)	975, 1020, 1473, 1875
BfmI	CTRYAG	1 cut(s)	707
BfoI	RGCGCY	5 cut(s)	251, 290, 858, 1053, 1934
BfuAI	ACCTGC	1 cut(s)	28
BfuI	GTATCC	1 cut(s)	9
BglI	GCCNNNNNGGC	1 cut(s)	116
BmcAI	AGTACT	1 cut(s)	973
Bme18I	GGWCC	8 cut(s)	315, 652, 799, 950, 965, 1501, 1738, 1804
BmeRI	GACNNNNNGTC	2 cut(s)	55, 883
BmiI	GGNNCC	9 cut(s)	249, 301, 499, 856, 951, 967, 1367, 1503, 1557
BmrI	ACTGGG	2 cut(s)	963, 1427
BmsI	GCATC	3 cut(s)	1472, 1670, 2065
BmuI	ACTGGG	2 cut(s)	963, 1427
BoxI	GACNNNNGTC	1 cut(s)	716
BpiI	GAAGAC	2 cut(s)	1317, 1785
BplI	GAGNNNNNCTC	4 cut(s)	740, 772, 1584, 1616
Bpu10I	CCTNAGC	1 cut(s)	2045
Bpu14I	TTCGAA	3 cut(s)	1184, 1190, 1646
BpuEI	CTTGAG	1 cut(s)	1685
BpuMI	CCSGG	8 cut(s)	496, 606, 632, 646, 908, 1505, 1519, 2024
Bsa29I	ATCGAT	1 cut(s)	1836
BsaAI	YACGTR	1 cut(s)	1570
BsaHI	GRCGYC	7 cut(s)	248, 434, 522, 594, 855, 1410, 1677
BsaI	GGTCTC	1 cut(s)	468
BsaJI	CCNNGG	8 cut(s)	243, 303, 495, 513, 846, 1128, 1467, 1517
BsaWI	WCCGGW	3 cut(s)	12, 353, 456
BsaXI	ACNNNNNCTCC	4 cut(s)	132, 162, 348, 378
Bse118I	RCCGGY	3 cut(s)	115, 238, 1537
Bse1I	ACTGG	2 cut(s)	969, 1433
BseAI	TCCGGA	1 cut(s)	353
BseBI	CCWGG	4 cut(s)	260, 304, 827, 1129
BseCI	ATCGAT	1 cut(s)	1836
BseDI	CCNNGG	8 cut(s)	243, 303, 495, 513, 846, 1128, 1467, 1517
BseGI	GGATG	7 cut(s)	142, 377, 1463, 1871, 1957, 2019, 2080
BseMII	CTCAG	6 cut(s)	173, 461, 951, 1085, 1127, 2059
BseNI	ACTGG	2 cut(s)	969, 1433
BseRI	GAGGAG	1 cut(s)	1568
BseSI	GKGCMC	1 cut(s)	945
BseX3I	CGGCCG	2 cut(s)	198, 240
BseYI	CCCAGC	3 cut(s)	111, 120, 1095
Bsh1236I	CGCG	4 cut(s)	56, 203, 245, 782
Bsh1285I	CGRYCG	2 cut(s)	201, 243
BshNI	GGYRCC	2 cut(s)	247, 854
BshVI	ATCGAT	1 cut(s)	1836
BsiEI	CGRYCG	2 cut(s)	201, 243
BsiHKAI	GWGCWC	3 cut(s)	369, 945, 1701
BsiWI	CGTACG	1 cut(s)	342
BslFI	GGGAC	4 cut(s)	416, 710, 1619, 1883
BsmAI	GTCTC	8 cut(s)	63, 257, 468, 1576, 1668, 1751, 1912, 1975
BsmBI	CGTCTC	5 cut(s)	63, 257, 1668, 1751, 1975
BsmFI	GGGAC	4 cut(s)	416, 710, 1619, 1883
Bso31I	GGTCTC	1 cut(s)	468
Bsp119I	TTCGAA	3 cut(s)	1184, 1190, 1646
Bsp1286I	GDGCHC	4 cut(s)	369, 758, 945, 1701
Bsp13I	TCCGGA	1 cut(s)	353
Bsp1407I	TGTACA	1 cut(s)	1954
Bsp19I	CCATGG	1 cut(s)	846
BspCNI	CTCAG	6 cut(s)	172, 462, 950, 1084, 1126, 2058
BspDI	ATCGAT	1 cut(s)	1836
BspEI	TCCGGA	1 cut(s)	353
BspFNI	CGCG	4 cut(s)	56, 203, 245, 782
BspHI	TCATGA	1 cut(s)	75
BspLI	GGNNCC	9 cut(s)	249, 301, 499, 856, 951, 967, 1367, 1503, 1557
BspMI	ACCTGC	1 cut(s)	28
BspPI	GGATC	6 cut(s)	537, 792, 902, 1360, 1373, 1987
BspT104I	TTCGAA	3 cut(s)	1184, 1190, 1646
BspT107I	GGYRCC	2 cut(s)	247, 854
BspTNI	GGTCTC	1 cut(s)	468
BsrBI	CCGCTC	1 cut(s)	679
BsrFI	RCCGGY	3 cut(s)	115, 238, 1537
BsrGI	TGTACA	1 cut(s)	1954
BsrI	ACTGG	2 cut(s)	969, 1433
BssAI	RCCGGY	3 cut(s)	115, 238, 1537
BssECI	CCNNGG	8 cut(s)	243, 303, 495, 513, 846, 1128, 1467, 1517
BssNI	GRCGYC	7 cut(s)	248, 434, 522, 594, 855, 1410, 1677
BssT1I	CCWWGG	1 cut(s)	846
Bst2UI	CCWGG	4 cut(s)	260, 304, 827, 1129
Bst4CI	ACNGT	3 cut(s)	1262, 1487, 2008
Bst6I	CTCTTC	2 cut(s)	1322, 1585
BstACI	GRCGYC	7 cut(s)	248, 434, 522, 594, 855, 1410, 1677
BstAUI	TGTACA	1 cut(s)	1954
BstBAI	YACGTR	1 cut(s)	1570
BstBI	TTCGAA	3 cut(s)	1184, 1190, 1646
BstC8I	GCNNGC	8 cut(s)	117, 126, 240, 677, 681, 913, 1966, 2001
BstDEI	CTNAG	6 cut(s)	159, 470, 937, 1071, 1113, 2045
BstDSI	CCRYGG	3 cut(s)	243, 846, 1467
BstF5I	GGATG	7 cut(s)	142, 377, 1463, 1871, 1957, 2019, 2080
BstFNI	CGCG	4 cut(s)	56, 203, 245, 782
BstH2I	RGCGCY	5 cut(s)	251, 290, 858, 1053, 1934
BstHHI	GCGC	7 cut(s)	205, 250, 289, 782, 857, 1052, 1933
BstMAI	GTCTC	8 cut(s)	63, 257, 468, 1576, 1668, 1751, 1912, 1975
BstMCI	CGRYCG	2 cut(s)	201, 243
BstNI	CCWGG	4 cut(s)	260, 304, 827, 1129
BstPAI	GACNNNNGTC	1 cut(s)	716
BstSFI	CTRYAG	1 cut(s)	707
BstSLI	GKGCMC	1 cut(s)	945
BstUI	CGCG	4 cut(s)	56, 203, 245, 782
BstV2I	GAAGAC	2 cut(s)	1317, 1785
BstX2I	RGATCY	2 cut(s)	784, 1365
BstYI	RGATCY	2 cut(s)	784, 1365
BstZI	CGGCCG	2 cut(s)	198, 240
Bsu15I	ATCGAT	1 cut(s)	1836
BsuI	GTATCC	1 cut(s)	9
BsuTUI	ATCGAT	1 cut(s)	1836
BtgI	CCRYGG	3 cut(s)	243, 846, 1467
BtsCI	GGATG	7 cut(s)	142, 377, 1463, 1871, 1957, 2019, 2080
BtsIMutI	CAGTG	3 cut(s)	540, 945, 1267
BveI	ACCTGC	1 cut(s)	28
Cac8I	GCNNGC	8 cut(s)	117, 126, 240, 677, 681, 913, 1966, 2001
CaiI	CAGNNNCTG	1 cut(s)	289
CciI	TCATGA	1 cut(s)	75
CfoI	GCGC	7 cut(s)	205, 250, 289, 782, 857, 1052, 1933
Cfr10I	RCCGGY	3 cut(s)	115, 238, 1537
Cfr42I	CCGCGG	1 cut(s)	246
ClaI	ATCGAT	1 cut(s)	1836
CpoI	CGGWCCG	1 cut(s)	652
Csp6I	GTAC	6 cut(s)	343, 454, 972, 1064, 1106, 1955
CspI	CGGWCCG	1 cut(s)	652
CviAII	CATG	7 cut(s)	31, 64, 76, 571, 847, 946, 1961
CviQI	GTAC	6 cut(s)	343, 454, 972, 1064, 1106, 1955
DdeI	CTNAG	6 cut(s)	159, 470, 937, 1071, 1113, 2045
DinI	GGCGCC	2 cut(s)	249, 856
DriI	GACNNNNNGTC	2 cut(s)	55, 883
EaeI	YGGCCR	3 cut(s)	198, 240, 909
EagI	CGGCCG	2 cut(s)	198, 240
Eam1104I	CTCTTC	2 cut(s)	1322, 1585
Eam1105I	GACNNNNNGTC	2 cut(s)	55, 883
EarI	CTCTTC	2 cut(s)	1322, 1585
EciI	GGCGGA	2 cut(s)	219, 1592
Ecl136II	GAGCTC	1 cut(s)	1699
EclXI	CGGCCG	2 cut(s)	198, 240
Eco130I	CCWWGG	1 cut(s)	846
Eco24I	GRGCYC	2 cut(s)	758, 1701
Eco31I	GGTCTC	1 cut(s)	468
Eco47I	GGWCC	8 cut(s)	315, 652, 799, 950, 965, 1501, 1738, 1804
Eco52I	CGGCCG	2 cut(s)	198, 240
Eco53kI	GAGCTC	1 cut(s)	1699
Eco57I	CTGAAG	2 cut(s)	266, 945
Eco72I	CACGTG	1 cut(s)	1570
EcoICRI	GAGCTC	1 cut(s)	1699
EcoO109I	RGGNCCY	2 cut(s)	965, 1738
EcoRI	GAATTC	3 cut(s)	1180, 1186, 1192
EcoRII	CCWGG	4 cut(s)	258, 302, 825, 1127
EcoT14I	CCWWGG	1 cut(s)	846
EcoT38I	GRGCYC	2 cut(s)	758, 1701
EgeI	GGCGCC	2 cut(s)	249, 856
EheI	GGCGCC	2 cut(s)	249, 856
ErhI	CCWWGG	1 cut(s)	846
Esp3I	CGTCTC	5 cut(s)	63, 257, 1668, 1751, 1975
FaeI	CATG	7 cut(s)	34, 67, 79, 574, 850, 949, 1964
FaqI	GGGAC	4 cut(s)	416, 710, 1619, 1883
FatI	CATG	7 cut(s)	30, 63, 75, 570, 846, 945, 1960
FauI	CCCGC	4 cut(s)	133, 145, 197, 672
FokI	GGATG	6 cut(s)	129, 384, 1450, 1878, 1964, 2026
FriOI	GRGCYC	2 cut(s)	758, 1701
FspBI	CTAG	4 cut(s)	975, 1020, 1473, 1875
GlaI	GCGC	7 cut(s)	204, 249, 288, 781, 856, 1051, 1932
GsaI	CCCAGC	3 cut(s)	115, 124, 1099
HaeII	RGCGCY	5 cut(s)	251, 290, 858, 1053, 1934
HhaI	GCGC	7 cut(s)	205, 250, 289, 782, 857, 1052, 1933
Hin1I	GRCGYC	7 cut(s)	248, 434, 522, 594, 855, 1410, 1677
Hin1II	CATG	7 cut(s)	34, 67, 79, 574, 850, 949, 1964
Hin6I	GCGC	7 cut(s)	203, 248, 287, 780, 855, 1050, 1931
HinP1I	GCGC	7 cut(s)	203, 248, 287, 780, 855, 1050, 1931
HincII	GTYRAC	1 cut(s)	589
HindII	GTYRAC	1 cut(s)	589
HphI	GGTGA	5 cut(s)	85, 421, 1073, 1117, 1684
Hpy166II	GTNNAC	6 cut(s)	589, 943, 1501, 1535, 1957, 2029
Hpy8I	GTNNAC	6 cut(s)	589, 943, 1501, 1535, 1957, 2029
HpyAV	CCTTC	2 cut(s)	82, 109
HpyCH4III	ACNGT	3 cut(s)	1262, 1487, 2008
HpyCH4IV	ACGT	5 cut(s)	434, 522, 1569, 1760, 1790
HpyCH4V	TGCA	3 cut(s)	274, 943, 1714
HpyF3I	CTNAG	6 cut(s)	159, 470, 937, 1071, 1113, 2045
HpySE526I	ACGT	5 cut(s)	434, 522, 1569, 1760, 1790
Hsp92I	GRCGYC	7 cut(s)	248, 434, 522, 594, 855, 1410, 1677
Hsp92II	CATG	7 cut(s)	34, 67, 79, 574, 850, 949, 1964
HspAI	GCGC	7 cut(s)	203, 248, 287, 780, 855, 1050, 1931
KasI	GGCGCC	2 cut(s)	247, 854
Kpn2I	TCCGGA	1 cut(s)	353
KroI	GCCGGC	2 cut(s)	115, 238
KroNI	GCCGGC	2 cut(s)	117, 240
KspI	CCGCGG	1 cut(s)	246
LmnI	GCTCC	9 cut(s)	28, 299, 356, 763, 1132, 1555, 1771, 1939, 2038
LweI	GCATC	3 cut(s)	1472, 1670, 2065
MaeI	CTAG	4 cut(s)	975, 1020, 1473, 1875
MaeII	ACGT	5 cut(s)	434, 522, 1569, 1760, 1790
MaeIII	GTNAC	3 cut(s)	538, 977, 1782
MbiI	CCGCTC	1 cut(s)	679
MfeI	CAATTG	1 cut(s)	918
MflI	RGATCY	2 cut(s)	784, 1365
MhlI	GDGCHC	4 cut(s)	369, 758, 945, 1701
MluCI	AATT	5 cut(s)	918, 1180, 1186, 1192, 1884
MluI	ACGCGT	1 cut(s)	54
Mly113I	GGCGCC	2 cut(s)	248, 855
MlyI	GAGTC	5 cut(s)	659, 929, 1105, 1733, 1790
MmeI	TCCRAC	4 cut(s)	204, 651, 1476, 1752
MroI	TCCGGA	1 cut(s)	353
MroNI	GCCGGC	2 cut(s)	115, 238
MroXI	GAANNNNTTC	1 cut(s)	1792
MseI	TTAA	2 cut(s)	1763, 1815
MspA1I	CMGCKG	4 cut(s)	245, 277, 1407, 1561
MunI	CAATTG	1 cut(s)	918
MvaI	CCWGG	4 cut(s)	260, 304, 827, 1129
MvnI	CGCG	4 cut(s)	56, 203, 245, 782
NaeI	GCCGGC	2 cut(s)	117, 240
NarI	GGCGCC	2 cut(s)	248, 855
NciI	CCSGG	8 cut(s)	496, 606, 632, 646, 908, 1505, 1519, 2024
NcoI	CCATGG	1 cut(s)	846
NgoMIV	GCCGGC	2 cut(s)	115, 238
NlaIII	CATG	7 cut(s)	34, 67, 79, 574, 850, 949, 1964
NlaIV	GGNNCC	9 cut(s)	249, 301, 499, 856, 951, 967, 1367, 1503, 1557
NmeAIII	GCCGAG	1 cut(s)	538
NmuCI	GTSAC	2 cut(s)	538, 1782
NspV	TTCGAA	3 cut(s)	1184, 1190, 1646
PagI	TCATGA	1 cut(s)	75
PcsI	WCGNNNNNNNCGW	7 cut(s)	375, 434, 591, 1043, 1170, 1340, 1464
PdiI	GCCGGC	2 cut(s)	117, 240
PdmI	GAANNNNTTC	1 cut(s)	1792
PfeI	GAWTC	8 cut(s)	34, 1000, 1042, 1214, 1390, 1439, 1611, 1879
Pfl23II	CGTACG	1 cut(s)	342
PflFI	GACNNNGTC	4 cut(s)	433, 521, 690, 1723
PflMI	CCANNNNNTGG	1 cut(s)	330
PleI	GAGTC	5 cut(s)	659, 929, 1105, 1732, 1789
PluTI	GGCGCC	2 cut(s)	251, 858
PmaCI	CACGTG	1 cut(s)	1570
PmlI	CACGTG	1 cut(s)	1570
PpsI	GAGTC	5 cut(s)	659, 929, 1105, 1732, 1789
Ppu21I	YACGTR	1 cut(s)	1570
PpuMI	RGGWCCY	2 cut(s)	965, 1738
PshAI	GACNNNNGTC	1 cut(s)	716
Psp124BI	GAGCTC	1 cut(s)	1701
Psp5II	RGGWCCY	2 cut(s)	965, 1738
Psp6I	CCWGG	4 cut(s)	258, 302, 825, 1127
PspCI	CACGTG	1 cut(s)	1570
PspFI	CCCAGC	3 cut(s)	111, 120, 1095
PspGI	CCWGG	4 cut(s)	258, 302, 825, 1127
PspLI	CGTACG	1 cut(s)	342
PspN4I	GGNNCC	9 cut(s)	249, 301, 499, 856, 951, 967, 1367, 1503, 1557
PspPPI	RGGWCCY	2 cut(s)	965, 1738
PstNI	CAGNNNCTG	1 cut(s)	289
PsuI	RGATCY	2 cut(s)	784, 1365
PsyI	GACNNNGTC	4 cut(s)	433, 521, 690, 1723
RsaI	GTAC	6 cut(s)	344, 455, 973, 1065, 1107, 1956
RsaNI	GTAC	6 cut(s)	343, 454, 972, 1064, 1106, 1955
Rsr2I	CGGWCCG	1 cut(s)	652
RsrII	CGGWCCG	1 cut(s)	652
SacI	GAGCTC	1 cut(s)	1701
SacII	CCGCGG	1 cut(s)	246
SaqAI	TTAA	2 cut(s)	1763, 1815
ScaI	AGTACT	1 cut(s)	973
SchI	GAGTC	5 cut(s)	659, 929, 1105, 1733, 1790
SduI	GDGCHC	4 cut(s)	369, 758, 945, 1701
SfaNI	GCATC	3 cut(s)	1472, 1670, 2065
SfcI	CTRYAG	1 cut(s)	707
SfoI	GGCGCC	2 cut(s)	249, 856
Sfr303I	CCGCGG	1 cut(s)	246
SfuI	TTCGAA	3 cut(s)	1184, 1190, 1646
SgrBI	CCGCGG	1 cut(s)	246
SinI	GGWCC	8 cut(s)	315, 652, 799, 950, 965, 1501, 1738, 1804
SmlI	CTYRAG	1 cut(s)	1700
SmoI	CTYRAG	1 cut(s)	1700
SpeI	ACTAGT	1 cut(s)	974
Sse9I	AATT	5 cut(s)	918, 1180, 1186, 1192, 1884
SspDI	GGCGCC	2 cut(s)	247, 854
SspMI	CTAG	4 cut(s)	975, 1020, 1473, 1875
SstI	GAGCTC	1 cut(s)	1701
StyI	CCWWGG	1 cut(s)	846
TaaI	ACNGT	3 cut(s)	1262, 1487, 2008
TaiI	ACGT	5 cut(s)	437, 525, 1572, 1763, 1793
TasI	AATT	5 cut(s)	918, 1180, 1186, 1192, 1884
TatI	WGTACW	4 cut(s)	971, 1063, 1105, 1954
TfiI	GAWTC	8 cut(s)	34, 1000, 1042, 1214, 1390, 1439, 1611, 1879
Tru1I	TTAA	2 cut(s)	1763, 1815
Tru9I	TTAA	2 cut(s)	1763, 1815
TscAI	CASTG	3 cut(s)	547, 945, 1267
TseFI	GTSAC	2 cut(s)	538, 1782
Tsp45I	GTSAC	2 cut(s)	538, 1782
TspDTI	ATGAA	3 cut(s)	47, 64, 806
TspGWI	ACGGA	8 cut(s)	20, 59, 312, 352, 563, 776, 1456, 1736
TspRI	CASTG	3 cut(s)	547, 945, 1267
Tth111I	GACNNNGTC	4 cut(s)	433, 521, 690, 1723
Van91I	CCANNNNNTGG	1 cut(s)	330
VneI	GTGCAC	1 cut(s)	941
VpaK11BI	GGWCC	8 cut(s)	315, 652, 799, 950, 965, 1501, 1738, 1804
XapI	RAATTY	4 cut(s)	1180, 1186, 1192, 1884
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2011
XmnI	GAANNNNTTC	1 cut(s)	1792
XspI	CTAG	4 cut(s)	975, 1020, 1473, 1875
ZraI	GACGTC	2 cut(s)	435, 523
ZrmI	AGTACT	1 cut(s)	973

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.